BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65410.1
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951385 jgi|Araly1|951385|scaffold_803272.1 1567 0.0
> Ahg951385 jgi|Araly1|951385|scaffold_803272.1
Length=981
Score = 1567 bits (848), Expect = 0.0
Identities = 939/982 (96%), Gaps = 9/982 (1%)
Strand=Plus/Plus
Query 63 TTTCACATTTCTCGACTTCTTGAATGGAGTTTGAAGacaacaacaacaacaacGACGAAG 122
||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1 TTTCACATTTCTCCACTTCTTTAATGGAGTTTGAAG------ACAACAACAACGACGAAG 54
Query 123 AGCAAGAAGAGGATATGAATCTTCATGAGGAAGAAGAAGACGACGACGCCGTTTACGAct 182
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 55 AGCAAGAAGAGGATATGAATCTTCACGAGGAAGAAGAAGACGACGACGCCGTTTACGACT 114
Query 183 ctcctcctctctctcGTGTTCTCCCCAAAGCCTCGACAGAAAGTCATGAAACCACCGGAA 242
|||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 115 CTCCTCCTCTCTCTCGCGTTGTCCCCAAAGCCTCGACAGAAAGTCATGAACCCACCGGAA 174
Query 243 CTACTTCCACAGGCGGTGGCGGAGGATTCATGGTTGTTCACGGCGGTGGAGGGAGCAGGT 302
| || |||||||||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct 175 CAACCTCCACAGGCGGTGGTGGAGGATTCATGGTTGTTCACGGTGGTGGAGGAAGCAGGT 234
Query 303 TTAGGTTCCGTGAGTGTCTCAAGAACCAAGCGGTGAACATAGGAGGACACGCGGTCGATG 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 235 TTAGGTTCCGTGAGTGTCTCAAGAACCAAGCGGTGAACATAGGAGGACACGCGGTGGATG 294
Query 363 GTTGTGGTGAGTTTATGCCAGCTGGAATCGAAGGTACCATCGACGCTCTAAAATGCGCCG 422
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 295 GCTGTGGTGAGTTTATGCCAGCTGGAATCGAAGGTACCATCGACGCGCTAAAATGCGCCG 354
Query 423 CTTGTGGCTGTCACCGTAACTTCCACCGCAAGGAATTACCTTACTTCCATCACGCGCCGC 482
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 355 CTTGTGGCTGTCACCGTAACTTCCACCGCAAGGAATTACCTTACTTCCACCACGCGCCGC 414
Query 483 CACAACATCAGCCTCCTCCTCCCCCGCCAGGGTTTTACCGTCTTCCAGCTCCGGTTAGCT 542
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 415 CACAACATCAGCCTCCTCCTCCTCCGCCAGGTTTTTACCGTCTTCCAGCTCCGGTAAGCT 474
Query 543 ACCGACCACCACCGTCACAAGCTCCTCCTCTTCAGCTCGCTCTTCCCCCTCCACAAAGAG 602
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 475 ACCGACCACCACCGTCACAAGCTCCTCCGCTTCAGCTCGCTCTTCCTCCTCCACAAAGAG 534
Query 603 AGAGATCAGAAGATCCAATGGAGACGTCTTCAGCTGAAGC---AGGAGGAGGGATTAGGA 659
|||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||
Sbjct 535 AGAGATCAGAAGATCCAATGGATACTTCTTCTGCTGAAGCAGGAGGAGGAGGGATTAGGA 594
Query 660 AGAGGCATAGGACTAAGTTTACGGCTGAGCAAAAGGAAAGGATGTTAGCTTTAGCTGAGA 719
||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 595 AGAGGTATAGGACTAAGTTCACGGCTGAGCAAAAGGAGAGGATGTTAGCTTTAGCTGAGA 654
Query 720 GGATTGGATGGAGAATTCAGAGACAAGACGATGAAGTGATTCAGAGATTTTGTCAGGAGA 779
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 655 GGATTGGATGGAGAATTCAGAGACAAGACGATGAAGTGATTCAAAGATTTTGTCAGGAGA 714
Query 780 CTGGTGTTCCGAGACAAGTTCTTAAGGTTTGGTTACATAACAACAAACACACTCTTGGTA 839
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CTGGTGTTCCCAGACAAGTTCTTAAGGTTTGGTTACATAACAACAAACACACTCTTGGTA 774
Query 840 AGTCGCCTTCACCACTTCATCATCATCAGGCTCCTCCTCCTCCACCACCACAGTCTTCGT 899
||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 775 AGTCGCCATCACCACTTCATCATCACCAGCCTCCTCCTCCTCCACCACCACAGTCTTCGT 834
Query 900 TTCATCATGAACAAGACCAACCATGAATCTTGAATTTCTTTGATCACTAGGGTTTTAATT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TTCATCATGAACAAGACCAACCATGAATCTTGAATTTCTTTGATCACTAGGGTTTTAATT 894
Query 960 TAGCTTAATTAATTACTTGAGAAATTTGAGAGACAAGGTTTTTATTGTTTAATTTATGTA 1019
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 895 TAGCTTAATTAATTACTTGAGAAATTTGAGAGAGAAGGTTTTTATTGTTTAATTTATGTA 954
Query 1020 CCCATTTTCCTCTTtgatgatg 1041
|||||| || ||||||||||||
Sbjct 955 CCCATTCTCGTCTTTGATGATG 976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40600906605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5