BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65420.3
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918339 jgi|Araly1|918339|Al_scaffold_0008_3090 1029 0.0
Ahg487872 jgi|Araly1|487872|fgenesh2_kg.6__1006__AT5G10440.1 442 3e-123
> Ahg918339 jgi|Araly1|918339|Al_scaffold_0008_3090
Length=918
Score = 1029 bits (557), Expect = 0.0
Identities = 633/668 (95%), Gaps = 11/668 (2%)
Strand=Plus/Plus
Query 533 AGGCTTGTGAA-GTACACCAGTTTGGACCATTGTGTTTTTGCTTAGCAATGAACTACTTG 591
|||||||| || | ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 260 AGGCTTGT-AAGGAACACCAGTTTGGACCATTGTGTTTTTGCTTATCAATGAACTACTTG 318
Query 592 GATCGATTCTTATCGGTTCATGATTTGCCTAGTGGCAAAGGTTGGATATTGCAGTTGTTG 651
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 319 GATCGATTCTTATCGGTTCATGATCTGCCTAGTGGCAAAAGTTGGATATTGCAGTTGTTG 378
Query 652 GCTGTGGCTTGTTTATCATTGGCAGCCAAAATTGAAGAAACTGAAGTTCCAATGTTGATA 711
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 379 GATGTGGCTTGTTTATCCTTGGCAGCCAAAATTGAAGAAACTGAAGTTCCAATGTTAATT 438
Query 712 GATCTTCAGGTTGGAGATCCTCAGTTTGTGTTTGAGGCTAAATCAGTCCAAAGAATGGAG 771
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 439 GAACTTCAGGTTGGAGATCCTCAGTTTGTGTTTGAGGCGAAATCAGTCCAAAGAATGGAA 498
Query 772 CTTTTGGTGTTGAACAAATTGAAATGGAGATTGAGAGCAATAACTCCATGCTCATACATA 831
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 CTTTTGGTGCTGAACAGATTGAAATGGAGATTGAGAGCAATAACTCCATGCTCATACATA 558
Query 832 AGATATTTCCTGAGAAAGATGAGTAAATGTGATCAAGAACCATCCAACACATTGATATCT 891
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 AGATATTTCTTGAGAAAGATGAGTAAATGTGATCAAGAACCATCCAACACATTGATATCC 618
Query 892 AGATCATTACAAGTGATAGCCAGCACAACCAAAGGTATTGACTTTTTGGAGTTTAGACCT 951
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 619 AGATCACTACAAGTGATAGCCAGCACAACCAAAGGTATTGACTTTATGGAGTTTAGACCT 678
Query 952 TCTGAAGTTGCTGCTGCTGTGGCACTTTCTGTTTCTGGAGAATTGCAGAGAGTACACTTT 1011
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 679 TCTGAAGTTGCTGCTGCTGTGGCACTTTCTGTTTCTGGAGAATTGCACACAGTACACTTT 738
Query 1012 GACAACTCTTCCTTCTCTCCTCTTTTCTCACTACTTCAAAAGGAGAGAGTGAAGAAGATA 1071
||||||||| ||| || | | | |||||||||||||||||||||||||||||||||
Sbjct 739 GACAACTCT-CCT-CT-T--T-T---CTCACTACTTCAAAAGGAGAGAGTGAAGAAGATT 789
Query 1072 GGGGAAATGATAGAGAGTGATGGCTCAGACTTATGTTCACAAACACCCAATGGGGTTTTA 1131
|||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 790 GGGGAAATGATACAGAGTGATGGTTCAGGCTTATGTTCACAAACACCCAATGGGGTTTTA 849
Query 1132 GAAGTATCGGCTTGTTGTTTCAGCTTTAAGACCCATGATTCTTCTTCTTCTTATACACAT 1191
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 GAAGTATCAGCTTGTTGTTTCAGCTTTAAGACCCATGATTCTTCTTCTTCTTATACACAT 909
Query 1192 CTTTCTTa 1199
||||||||
Sbjct 910 CTTTCTTA 917
Score = 300 bits (162), Expect = 2e-80
Identities = 241/274 (88%), Gaps = 26/274 (9%)
Strand=Plus/Plus
Query 244 ATGGCAGAG---GAGAATCTAGAACTGAGTCTTTTATGTACAGAGAGCAACG-T--TGAT 297
||||||||| |||||||||||||||||||||||||||||||||| ||||| | ||||
Sbjct 1 ATGGCAGAGACAGAGAATCTAGAACTGAGTCTTTTATGTACAGAGACCAACGTTGATGAT 60
Query 298 GAT---G---AGGGCATGATTGTTGACGAAACTCCGATTGAAATTTCGATTCCTCAGATG 351
||| | ||||||||||||||||| ||||||| | | |||||||||||
Sbjct 61 GATGAAGACAAGGGCATGATTGTTGACAAAACTCC----G-----T---TTCCTCAGATG 108
Query 352 GGTTTTTCTCAATCGGAGAGTGAGGAGATTATCATG-GAGATGGTGGAGAAGGAGAAGCA 410
||||| ||||||||||||||||| ||| |||||| | |||||||||||||||||||||||
Sbjct 109 GGTTTATCTCAATCGGAGAGTGAAGAGTTTATCA-GAGAGATGGTGGAGAAGGAGAAGCA 167
Query 411 GCATTTGCCAAGTGATGATTACATCAAGAGACTTAGAAGTGGAGATTTGGATTTGAATGT 470
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 168 GCATTTGCCAAGTGATGATTACATCAAGAGACTCAGAAGTGGAGATTTGGATTTGAATGT 227
Query 471 TGGAAGAAGAGATGCCCTCAATTGGATTTGGAAG 504
|||||||||||| |||||||||||||||||||||
Sbjct 228 TGGAAGAAGAGAAGCCCTCAATTGGATTTGGAAG 261
> Ahg487872 jgi|Araly1|487872|fgenesh2_kg.6__1006__AT5G10440.1
Length=959
Score = 442 bits (239), Expect = 3e-123
Identities = 474/582 (81%), Gaps = 38/582 (7%)
Strand=Plus/Plus
Query 553 TTTGGACCATTGTGTTTTTGCT-TAGCAATGAACTACTTGGATCGATTCTTATCGGTTCA 611
||||||||||||||| | || | |||||||||||||||||||||| |||||||| |||||
Sbjct 320 TTTGGACCATTGTGTATATG-TCTAGCAATGAACTACTTGGATCGTTTCTTATCTGTTCA 378
Query 612 TGATTTGCCTAGTGGCAAAGGTTGGATAT-TGCAGTTGTTGGCTGTGGCTTGTTTATCAT 670
||| ||||||| ||| |||| ||||| | |||| ||||||||||| |||||||||||||
Sbjct 379 TGACTTGCCTAATGGAAAAGCTTGGA-CTGTGCAATTGTTGGCTGTAGCTTGTTTATCAT 437
Query 671 TGGCAGCCAAAATTGAAGAAACTGAA-GTTCCA-ATGTTGATAGATCTTCAGGTTGGAGA 728
||||||| || || || |||||| || |||||| | ||| ||| |||| |||||||||||
Sbjct 438 TGGCAGCTAAGATAGAGGAAACT-AATGTTCCAGA-GTTAATACATCTGCAGGTTGGAGA 495
Query 729 T-CCTCAGTTTGTGTTTGAGGCTAAATCAGTCCAAAGAATGGAGCTTTTGGTGTTGAACA 787
| ||| ||| |||||||||||||||||||| ||||| ||||| | ||| |||||||||
Sbjct 496 TCCCT-TGTTCGTGTTTGAGGCTAAATCAGTTCAAAGGATGGAACATTTAGTGTTGAACG 554
Query 788 AATTGAAATGGAGATTGA-GAGCAATAACTCCATGCTCATACATAAGATATTTCCTGAGA 846
||||| |||||| || | ||||| | || || ||||| ||| | ||||| |||||| |
Sbjct 555 TATTGAGATGGAGGTT-ACGAGCAGTGACACCGTGCTCTTACGTTAGATACTTCCTGTGT 613
Query 847 AAGATGAGTAAATGTGATCAAGAACCATC-CAACACATTGATATCTAGATCATTACAAGT 905
||||| | | | ||||||||||||| | || || |||||||||||||||| |||||||
Sbjct 614 AAGATCAATGGTTATGATCAAGAACCA-CACAGCAGATTGATATCTAGATCACTACAAGT 672
Query 906 GATAGCCAGCACAACCAAAGGTATTGACTTTTTGGAGTTTAGACCTTCTGA-AGTTGCTG 964
|||||||||||||||||||||||||||||| |||||||||||| |||| || | ||||||
Sbjct 673 GATAGCCAGCACAACCAAAGGTATTGACTTCTTGGAGTTTAGAGCTTCAGAGA-TTGCTG 731
Query 965 CTGCTGTGGCACTTTCTGTTTCTGGAGAATTGCAGAGAGTACACTTTGACAACT-CTTCC 1023
|||| || || |||||||||||||||||| || | |||||||| | || ||
Sbjct 732 CTGCAGTTGCTCTTTCTGTTTCTGGAGAA---CA-------C--TTTGACAAATTCT-CC 778
Query 1024 TTCT-CTC-CTCTTTTCTCACTACTTCA-AAAGGAGAGAGTGAAGAAGATAGGGGAAATG 1080
|||| ||| | | || | | | | |||||||||| |||||||||| || ||||||
Sbjct 779 TTCTTCTCACACCTTGAA-A--AGGTAAGAAAGGAGAGAATGAAGAAGATTGGTGAAATG 835
Query 1081 ATAGAGAGTGATGGCTCAGACTT-ATGTTCACAAACACCCAA 1121
|||||||| ||||| ||| | || | ||||||||||||||||
Sbjct 836 ATAGAGAGAGATGGATCA-AGTTCAAGTTCACAAACACCCAA 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49445423349
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5