BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65430.3
Length=1252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496774 jgi|Araly1|496774|fgenesh2_kg.8__2590__AT5G65430.1 1206 0.0
Ahg940513 jgi|Araly1|940513|scaffold_601057.1 828 0.0
> Ahg496774 jgi|Araly1|496774|fgenesh2_kg.8__2590__AT5G65430.1
Length=1016
Score = 1206 bits (653), Expect = 0.0
Identities = 717/749 (96%), Gaps = 0/749 (0%)
Strand=Plus/Plus
Query 200 aaaaGCGAGATCTTCTTCTCTAATGGCGACGACCTTAAGCAGAGATCAATATGTCTACAT 259
|||| |||||||||||||||||||||||||||| |||| |||||||||||| || |||||
Sbjct 1 AAAATCGAGATCTTCTTCTCTAATGGCGACGACGTTAAACAGAGATCAATACGTGTACAT 60
Query 260 GGCGAAGCTCGCCGAGCAAGCCGAGCGTTACGAAGAGATGGTTCAATTCATGGAACAGCT 319
||||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 61 GGCGAAGCTTGCTGAGCAAGCTGAGCGTTACGAAGAGATGGTTCAATTCATGGAGCAGCT 120
Query 320 CGTAAGTGGAGCTACACCGGCCGGTGAGCTGACCGTAGAAGAGAGGAATCTTCTCTCGGT 379
||||||||||||||||||||||||||| || || || |||||||||||||||||||| ||
Sbjct 121 CGTAAGTGGAGCTACACCGGCCGGTGAACTCACGGTTGAAGAGAGGAATCTTCTCTCCGT 180
Query 380 CGCGTATAAGAACGTGATTGGATCTCTTCGTGCGGCATGGAGAATCGTGTCTTCGATTGA 439
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 CGCGTATAAGAACGTGATCGGATCTCTTCGTGCGGCATGGAGAATCGTTTCTTCGATTGA 240
Query 440 GCAAAAGGAAGAGAGCAGGAAGAACGAAGAACACGTGTCGCTTGTTAAGGATTACAGATC 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCAAAAGGAAGAGAGCAGGAAGAACGAAGAACACGTGTCGCTTGTTAAGGATTACAGATC 300
Query 500 TAAAGTTGAGACTGAGCTTTCTTCGATCTGTTCTGGGATTCTCAGGTTACTTGATTCGCA 559
||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 301 TAAAGTTGAGAGTGAGCTTTCTTCGATCTGTTCTGGAATTCTCAGGTTGCTTGATTCGCA 360
Query 560 TCTAATTCCTTCAGCTACTGCCAGTGAGTCTAAGGTTTTTTACCTGAAGATGAAAGGAGA 619
||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 361 TCTGATTCCTTCAGCTACTGCTAGTGAGTCTAAGGTTTTTTACTTGAAGATGAAAGGAGA 420
Query 620 TTATCATCGTTATTTGGCTGAGTTTAAATCTGGTGATGAGAGGAAAACTGCTGCTGAAGA 679
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 421 TTATCATCGTTATTTGGCTGAGTTTAAATCTGGTGATGAGAGGAAAACAGCTGCGGAAGA 480
Query 680 TACTATGATCGCTTACAAAGCTGCTCAGGACGTTGCAGTTGCTGATCTAGCACCTACACA 739
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 481 TACTATGATCGCTTACAAAGCTGCTCAGGACGTTGCGGTTGCTGATCTAGCACCAACACA 540
Query 740 TCCGATCAGGCTTGGTTTGGCTCTTAACTTCTCAGTGTTTTACTACGAGATTCTCAACTC 799
|||||||||||| ||| ||||||| || ||||||||||||||||||||||||||||||||
Sbjct 541 TCCGATCAGGCTGGGTCTGGCTCTCAATTTCTCAGTGTTTTACTACGAGATTCTCAACTC 600
Query 800 TTCAGAGAAAGCTTGTAGCATGGCGAAACAGGCTTTTGAAGAAGCCATTGCTGAGCTGGA 859
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 601 TTCAGAGAAAGCTTGTAGCATGGCCAAACAGGCTTTTGAAGAAGCCATTGCTGAGCTGGA 660
Query 860 CACATTGGGAGAGGAGTCATACAAGGACAGTACTCTCATCATGCAGTTGCTAAGGGACAA 919
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 661 CACATTGGGAGAGGAGTCATACAAGGACAGTACTCTCATCATGCAGTTGCTGAGGGACAA 720
Query 920 TCTAACCCTTTGGACCTCCGATATGCAGG 948
|||||||||||||||||||||||||||||
Sbjct 721 TCTAACCCTTTGGACCTCCGATATGCAGG 749
Score = 279 bits (151), Expect = 2e-74
Identities = 182/196 (93%), Gaps = 5/196 (3%)
Strand=Plus/Plus
Query 1061 TATTCAGGAGCAGATGGATGAGGCCTGAAGGTCTAATGGAAGAAAAGACGGTTATGTAAT 1120
||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 742 TATGCAGGAGCAGATGGATGAGGCCTGAAGGTTTAATGGAAG-AAAGACGGTTATGTAAT 800
Query 1121 GTACCTGCAACCGTAACCGAAAATCTGAGT---T-CAACCTCCTTTGCTGTAAAACTTGT 1176
|| |||||||| |||||| ||| |||||| | ||||| |||||||||||||||||||
Sbjct 801 GTTTCTGCAACCTTAACCGGAAACCTGAGTGAGTCCAACCCCCTTTGCTGTAAAACTTGT 860
Query 1177 CGAAAAGAAAAGTTTGtttttttATGACAGATTATGTGCACAGCTTTGGTGTTATCTGCT 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 CGAAAAGAAAAGTTTGTTTTTTTATGACAGATTATGTGCACAGCTTTGGTGTTATCTGCT 920
Query 1237 GCTCTGTATCAACTCT 1252
|||||||| |||||||
Sbjct 921 GCTCTGTACCAACTCT 936
> Ahg940513 jgi|Araly1|940513|scaffold_601057.1
Length=787
Score = 828 bits (448), Expect = 0.0
Identities = 644/740 (87%), Gaps = 7/740 (1%)
Strand=Plus/Plus
Query 213 TCT-TCTCTAATGGCGACGACCTTAAGCAGAGATCAATATGTCTACATGGCGAAGCTCGC 271
||| |||||||||||| |||| ||| ||||||| || ||||| |||||||||||||||||
Sbjct 11 TCTCTCTCTAATGGCGGCGACATTAGGCAGAGACCAGTATGTGTACATGGCGAAGCTCGC 70
Query 272 CGAGCAAGCCGAGCGTTACGAAGAGATGGTTCAATTCATGGAACAGCTCGTAAGTGGAGC 331
|||||| || ||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 71 CGAGCAGGCGGAGCGTTACGAAGAGATGGTTCAATTCATGGAACAGCTCGTTACAGGCGC 130
Query 332 TACACCGGCCGGT-GAGCTGACCGTAGAAGAGAGGAATCTTCTCTCGGTCGCGTATAAGA 390
||| ||||| || ||||| ||||| |||||||||||||| ||||| || || || || |
Sbjct 131 TACTCCGGC-GGAAGAGCTCACCGTTGAAGAGAGGAATCTCCTCTCTGTTGCTTACAAAA 189
Query 391 ACGTGATTGGATCTCTTCGTGCGGCATGGAGAATCGTGTCTTCGATTGAGCAAAAGGAAG 450
||||||| |||||||| || || || ||||| |||||||| || |||||||| |||||||
Sbjct 190 ACGTGATCGGATCTCTACGCGCCGCCTGGAGGATCGTGTCCTCTATTGAGCAGAAGGAAG 249
Query 451 AGAG-CAGGAAGAACGAAGAACACGTGTCGCTTGTTAAGGATTACAGATCTAAAGTTGAG 509
|||| | | |||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 250 AGAGTC-GTAAGAACGACGAGCACGTGTCGCTTGTCAAGGATTACAGATCTAAAGTTGAG 308
Query 510 ACTGAGCTTTCTTC-GATCTGTTCTGGGATTCTCAGGTTACTTGATTCGCATCTAATTCC 568
|||||||||||||| | | || ||||| ||||| | | | ||||| |||||||| || ||
Sbjct 309 ACTGAGCTTTCTTCAGTT-TGCTCTGGAATTCTTAAGCTCCTTGACTCGCATCTGATCCC 367
Query 569 TTCAGCTACTGCCAGTGAGTCTAAGGTTTTTTACCTGAAGATGAAAGGAGATTATCATCG 628
|| ||| || |||||||||||||| |||||| ||||||||||||| |||||||||||
Sbjct 368 ATCTGCTGGAGCTAGTGAGTCTAAGGTCTTTTACTTGAAGATGAAAGGTGATTATCATCG 427
Query 629 TTATTTGGCTGAGTTTAAATCTGGTGATGAGAGGAAAACTGCTGCTGAAGATACTATGAT 688
||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
Sbjct 428 TTACATGGCTGAGTTTAAGTCTGGTGATGAGAGGAAAACTGCTGCTGAAGATACCATGCT 487
Query 689 CGCTTACAAAGCTGCTCAGGACGTTGCAGTTGCTGATCTAGCACCTACACATCCGATCAG 748
||||||||||||||||||||| | |||| ||| ||| | |||||||| ||||| || ||
Sbjct 488 CGCTTACAAAGCTGCTCAGGATATCGCAGCTGCGGATATGGCACCTACTCATCCAATAAG 547
Query 749 GCTTGGTTTGGCTCTTAACTTCTCAGTGTTTTACTACGAGATTCTCAACTCTTCAGAGAA 808
||||||| |||| || || |||||||| || ||||| ||||||||||| |||||||| ||
Sbjct 548 GCTTGGTCTGGCCCTGAATTTCTCAGTCTTCTACTATGAGATTCTCAATTCTTCAGACAA 607
Query 809 AGCTTGTAGCATGGCGAAACAGGCTTTTGAAGAAGCCATTGCTGAGCTGGACACATTGGG 868
|||||||| |||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 608 AGCTTGTAACATGGCCAAACAGGCTTTTGAAGAAGCCATAGCTGAGCTTGACACATTGGG 667
Query 869 AGAGGAGTCATACAAGGACAGTACTCTCATCATGCAGTTGCTAAGGGACAATCTAACCCT 928
|||||| || ||||| ||||| |||||||| ||||||||||| ||||||||| |||||||
Sbjct 668 AGAGGAATCCTACAAAGACAGCACTCTCATAATGCAGTTGCTGAGGGACAATTTAACCCT 727
Query 929 TTGGACCTCCGATATGCAGG 948
||||||||||||||||||||
Sbjct 728 TTGGACCTCCGATATGCAGG 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46776819159
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5