BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65440.3
Length=3832
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332760 jgi|Araly1|332760|fgenesh1_pm.C_scaffold_8002103 3358 0.0
Ahg940514 jgi|Araly1|940514|scaffold_601058.1 1463 0.0
> Ahg332760 jgi|Araly1|332760|fgenesh1_pm.C_scaffold_8002103
Length=3276
Score = 3358 bits (1818), Expect = 0.0
Identities = 1938/1997 (97%), Gaps = 4/1997 (0%)
Strand=Plus/Plus
Query 1668 CAGAGTGAAAAACTGCGATGGTTACCAATATATCATGAACCAGAGCATGAACTAATTGGG 1727
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1282 CAGAGTGAAAAACTGCGATGGTTGCCAATATATCATGAACCAGAGCATGAACTAATTGGG 1341
Query 1728 AGAATCCAACTTACG-TTTAGTTACTCAAGTAGTTTAGATGAAAAAACTAAGTGTGGGTT 1786
||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1342 AGAATCCAACTTA-GTTTTAGTTACTCAAGTAGTTTAGATGAAAAAACAAAGTGTGGGTT 1400
Query 1787 GGTGGCAGAAACTTCAGCGTATGATCTTGTCCTAGAGGTGGCTATGAAAGCAGAACGATT 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 GGTGGCAGAAACTTCAGCGTATGATCTTGTCCTAGAGGTGGCTATGAAAGCAGAACGATT 1460
Query 1847 TCAGCGTAGAAATTTATTATTTAAGGGCCCGTGGCATTGGATGATAACTCGATTTGCATC 1906
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 TCAGCGAAGAAATTTATTGTTTAAGGGCCCGTGGCATTGGATGATAACTCGATTTGCATC 1520
Query 1907 CTATTACGGGGTTTCAGATGCATACACTAGATTAAGATATCTTTCTTATGTCATGGATGT 1966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 CTATTACGGGGTTTCAGATGCATACACTAGATTAAGATATCTTTCTTATGTCATGGATGT 1580
Query 1967 CGCATCGCCTACCAAGGACTGTCTTGATCTGATACATGATTTTCTATTCCCTATTATAAT 2026
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1581 CACATCGCCTACCAAGGACTGTCTTGATCTGATACATGATTTTCTATTCCCTATTTTAAT 1640
Query 2027 GACAAGCAACCACAGGGCTGTATTGAGTCATCAAGAGAATCGGTTACTTGGGGAAATTGA 2086
||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1641 GACCAGCAACCACAAGGCTGTATTGAGTCATCAAGAGAATCGATTACTTGGGGAAATTGA 1700
Query 2087 CGAACAAATTCAGCAGATTCTCGCTTCAGCATTTGAGAATTATAAATCACTTGCTGAACT 2146
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1701 CGAACAAATTCAGCAGATTCTTGCTTCAGCATTTGAGAATTATAAATCACTTGATGAACT 1760
Query 2147 GTCTTTCTCCGGGATGAAAGATGTTTTTGAGTCTGCTACGGGGACTCCAGCACCTGCTAT 2206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1761 GTCTTTCTCCGGGATGAAAGATGTTTTTGAGTCTGCTACGGGGACTCCAGCACCTGCTAT 1820
Query 2207 AGAATCAGCTGTCAAGCTTTATGGTCTTCTCAACGATGTATTAACCCCCGAGGCACAGTT 2266
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1821 CGAATCAGCTGTCAAGCTCTATGGTCTTCTCAACGATGTATTAACCCCCGAGGCACAGTT 1880
Query 2267 GAAACTCTGCAGATACTTTCAGGCTGCTTCAAAGAAGAGGTCAAGAAGACATTTATTGGA 2326
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1881 GAAACTCTGCAGATACTTTCAGGCGGCTTCAAAGAAGAGGTCAAGAAGACATTTATTGGA 1940
Query 2327 CACAAACGATTTACTTAACAACCGTAGTGAAGGTGTACCAGTTGATCCCATGGTGCTTGC 2386
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
Sbjct 1941 AACAAACGATTTACTTAACAACCGTAGTGAAGGTGTACCAATTGATCCCATGGCGCTTCC 2000
Query 2387 AGCTTCGTATCAAAAGATGAAGTCTCTAATCTTAAGCCTTAAAAATGAAATATCCACTGA 2446
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2001 AGCTTCTTATCAAAAGATGAAGTCTCTAATCTTAAGTCTTAAAAATGAAATATCCACTGA 2060
Query 2447 CATAGCGATTCATGACTGCAATGTGCTCCCAAGCTTTATAGACCTTCCAAATCATTCAGC 2506
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2061 CATAGCGATCCATAACTGCAATGTGCTCCCAAGCTTTATAGACCTTCCAAATCATTCAGC 2120
Query 2507 GGCAATATATAGTGTTGATGTCTGCAATAGGCTCCGGGAATTTCTTCTCGTTTGGCCTCC 2566
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 2121 GGCAATATATAGTGTTGATCTCTGCAATAGGCTCCGGGAATTTCTTCTCGTATGGCCTCC 2180
Query 2567 TCCTGGACCATCACCTGCGGTTGTTGATTTAGTTATTACAACTGCTGACTTTCAGAGAGA 2626
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2181 TCCTGGACCATCACCTGCGGTTGTTGATCTAGTTATTACAACTGCTGACTTTCAGAGAGA 2240
Query 2627 TCTCTCTAGCTGGCACATAAATCCTATTAAAGGTGGCGTTAATGCCAAGGAGCTTTTCTA 2686
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2241 TATCTCTAGCTGGAACATAAATCCTATTAAAGGTGGCGTTAATGCCAAGGAGCTTTTCTA 2300
Query 2687 TTCATATATCACAACCTGGATTGAAGAGAAAAGGCGAGTTTTATATGAACTCTGCAAGCT 2746
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 2301 TTCATATATCACAACCTGGATTGAAGAGAAAAGACGAGTTTTATATGAACTCTGTAAGCT 2360
Query 2747 AGAGACGTCAAAAGCATGCGTCGAGATTCCGGGATTGACTTCTCCTTTTGTCGATGAGAT 2806
|||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct 2361 AGAGACGTCAAAAGCATGTGGCGAGATACCGGGATTGACTTCTCCTTTTGTCGATGAGAT 2420
Query 2807 GTATGAGAGACTCAATGGGACACTTGATGAATACGATATCATCATTAGGCGGTGGCCAGA 2866
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2421 GTATGAGAGACTCAATGGGACACTTGATGAATACGATATCATCATTAGGCGTTGGCCAGA 2480
Query 2867 ATACGCAATATCCTTGGAGAAAGTTGTAGCAGACTCAGAGAAGGCAATAGTTGAAGCCAT 2926
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2481 ATACGCAATATCCTTGGAGAAAGTTGTAGCAGACGCAGAGAAGGCAATAGTTGAAGCCAT 2540
Query 2927 GGAGAAACAATTTACTGAGATTTTATCTCCGTTGAAGGAAAGTAAAATATTTGGCCTGAA 2986
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2541 GGAGAAACAATTTACTGAGATTTTATCTCCGTTAAAGGAAAGTAAAATATTTGGCCTGAA 2600
Query 2987 AATTGTCAAGAAATTCACCAAAGGCACACCTAATCCTTATTCTGTTCCAAAAGAGCTTGG 3046
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2601 AATTGTCAAGAAATTCACCAAAGGCACACCTAATCCTTATTCTGTTCCAAACGAGCTTGG 2660
Query 3047 AGTTCTTCTCAACTCAATGAAAAGAGTGCTTGACATTTTACGCCCGAGCATAGAGAACCG 3106
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2661 AGTTCTTCTCAACTCAATGAAAAGAGTGCTTGACATTTTACGCCCGAGTATAGAGAACCG 2720
Query 3107 CTTCAAATCTTGGAATTCATATATCCCTGATGGAGAAAACAGAGTCTTGGGAGAGCGGTT 3166
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2721 ATTCAAATCTTGGAATTCATATATCCCTGATGGAGAAAACAGAGTCTTGGGAGAGCGGTT 2780
Query 3167 AAGTGAGGTGACAGTATTGTTAAGATCCAAATTCAGAAGTTATATGCAAGCGCTTGTGGA 3226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2781 AAGTGAGGTGACAGTATTGTTAAGATCCAAATTCAGAAGTTATATGCAAGCGCTTGTGGA 2840
Query 3227 GAAACTTGCAGAAAATACGAGGATACAAAGTCACATGAAGCTAAAGACCATCATCCACGA 3286
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2841 GAAACTTGCAGAGAATACGAGGATACAAAGTCACATGAAGCTAAAGAGCATCATCCACGA 2900
Query 3287 CTTAAGGGAAACCACAGCGGAACCGGATGTTAGAAACAGAATGAC-GTCATTGAAGGATT 3345
|||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct 2901 CTTAAGGGAAACCACAGCAGAACCGGATGTTAGAAACAGAATGACAG-CATTGAAGGATT 2959
Query 3346 TGCTAGACAAAACCATCGATCATCTACACGGTGTTTTCTTACCAGATGTGTTTGTAGCAA 3405
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 2960 TGCTAGACAAAACCATCGATCATCTACACGGTGTTTTCTTACCCGATGTGTTTGTATCAA 3019
Query 3406 TCTGCAGAGGAATCTGGGACCGAATGGGACAGGATGTGCTTCGTCTTTTGGAAGACAGGA 3465
||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 3020 TCTGCAGAGGAATTTGGGACCGAATGGGACAGGATGTGCTTCGTCTTTTGGAGGATAGGA 3079
Query 3466 AAGATAATGTGACTTGGCATAAAGGCCCAAGAATCGCAGTTTCTGTTTTGGATGAAATCT 3525
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||
Sbjct 3080 AAGATAATGTGACTTGGCACAAAGGCCCGAGAATCGCAGTTTCTGTTTTAGATGAGATCT 3139
Query 3526 TTGCGACACAAATGCAAAGCTTGCTTGGAAACGGTTTGAAGCCCGAGCACTTGGAGCCAC 3585
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 3140 TTGCGACACAAATGCAAAGCTTGCTTGGAAACGCTTTGAAGCCAGAGCACTTGGAGCCAC 3199
Query 3586 CAAGATCGATGATGGAACTCAGGTCTATGCTATGCAAAGATTCTACGGATTACAGAGAAG 3645
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3200 CGAGATCGATGATGGAACTCAGGTCTATGCTATGCAAAGATTCTACGGATTACAGAGAAG 3259
Query 3646 GGGGATACAACTACTAG 3662
| || ||||||||||||
Sbjct 3260 GAGGCTACAACTACTAG 3276
Score = 2036 bits (1102), Expect = 0.0
Identities = 1225/1285 (95%), Gaps = 5/1285 (0%)
Strand=Plus/Plus
Query 285 ATGTTCAGGGAAGCTGGCTTAAGAAACATAGGAGAGGATGTTGATTCGAGGTGGACGATT 344
||||||| |||||||||||| |||| | ||||||||||||||| |||||||||||| |||
Sbjct 1 ATGTTCAAGGAAGCTGGCTTGAGAAGCTTAGGAGAGGATGTTGGTTCGAGGTGGACAATT 60
Query 345 GGTAATCGGAAATTGGATGCTAAGTCTGTTCCCAATGCCAATTCTGGTCATGGTTTTGGA 404
|||||||| ||||||||||||||| | |||||||||||||||||||||||||
Sbjct 61 GGTAATCGCAAATTGGATGCTAAG---AAAACTGTTGCCAATTCTGGTCATGGTTTTGGA 117
Query 405 TTCAGGAGTGCTCCTCCATTGTCTTCATCAATTAAACCCGTGAGAGGTAATAACAATGGT 464
|||| |||||||||||||||||| ||| ||| ||||| || |||||||||||||| ||||
Sbjct 118 TTCAAGAGTGCTCCTCCATTGTCGTCAGCAACTAAACACGCGAGAGGTAATAACAGTGGT 177
Query 465 GGTTCAAGTTCAGACATGGACATTGCTTCTGATTCAGATGAAGAGATATTCGAGAGGCAA 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GGTTCAAGTTCAGACATGGACATTGCTTCTGATTCAGATGAAGAGATATTCGAGAGGCAA 237
Query 525 CACTCTCCTCAAGATTATAGAATTCATCTTGGTTTGCCTCACGTCGCAGCTCAAAATGGA 584
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 238 CACTCTCCTCAAGATTATAGAATTCATGTTGGTTTGCCTCACGTGGCAGCTCAAAATGGA 297
Query 585 CTTGGACGTAATGGTGCTAAGGTCTTTGGTGCTGCTGATGATTTATCTGACTCAGCTACT 644
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 298 CTTGGACGTAATGGTGCTAAGGTCTTTGGTGCTGCTGATGATTTATCAGACTCAGCTACA 357
Query 645 AGCACTGAAGTTTCATATGAAGCAGAAGCTTGTGGTGTGCGGAACAATATATCTTCACAT 704
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 358 AGCACTGAAGTTTCATATGAAGCAGAAGCTTGTGGTGTGCGGAATAATATATCTTCGCAT 417
Query 705 AATGAATTTGAAAGACGAAATGTTGAGGCTGGAACTTCAGGAAGGACTCTGAACGGGACA 764
||||||| ||||||| ||||||||||||||||||||||||||||||| | |||||||||
Sbjct 418 AATGAATGTGAAAGAAGAAATGTTGAGGCTGGAACTTCAGGAAGGACCCAGAACGGGACT 477
Query 765 AGCACTTCAACAAGTTCATTGCCTCG-TTTCCCCACCTTTCATGCGAGTGAGCAAGGTCC 823
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 478 AGCACTTCAACAAGTTCATTGCCTCGCTTT-CCCACCTTTCATGCGAGTGAGCAAGGTCC 536
Query 824 ATGGTCTGCGATGATTGCCTATGAAGCCTGTGTACGGTTATGTCTTCATTCATGGTCAAC 883
||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 537 ATGGTCTGCAATGATTGCCTACGAAGCCTGTGTGCGGTTATGTCTTCATTCATGGTCAAC 596
Query 884 GGATAGTGTCAGCGAGGCTTCTTACTTCCTCAACAATGAATGCACCATAATGCGGAATGC 943
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 597 GGATAGTGTCAGCGAGGCTTCTTACTTCCTGAACAATGAATGCACCATAATGAGGAATGC 656
Query 944 ATTTAGTTTGCAGAGGTTTTTCCTTCATTCTGAAGAAGAGTTACTGGGAAAGGGACCTTC 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ATTTAGTTTGCAGAGGTTTTTCCTTCATTCTGAAGAAGAGTTACTGGGAAAGGGACCTTC 716
Query 1004 TGAGTTGGTTACTGAGACGTCTGTTCCAAAATCGAAGAAGACTATTGGAAAAATTAAACT 1063
|||||||||||| ||||| |||| ||||||||| ||||||| |||||||||||||| |||
Sbjct 717 TGAGTTGGTTACCGAGACATCTGCTCCAAAATCTAAGAAGAATATTGGAAAAATTAGACT 776
Query 1064 CCAAGTTCGTAGAATTAAAATGGGATTAGATCCACCACCTGGCTGTAACATTGCAACACT 1123
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 777 CCAAGTTCGTAGAATTAAAATGGGATTAGATCCACCACCTGGTTGTAACATTGCAACACT 836
Query 1124 GACGGTCTCCAAGGAAAAGCTCGAAGTTGTTCGTCACCATATTGTGGAACTGAATTCGAC 1183
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 837 GACGGTCTCCAAGGAAAAGCTCGAAGTTGTTCGTCAGCATATTGTGGAACTGAATTCGAC 896
Query 1184 TTTATCTTCTGGATGGAAAGCAGCGAGGAAAGTTCATGTCACTCCCCAAGTTCCTCTAAA 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TTTATCTTCTGGATGGAAAGCAGCGAGGAAAGTTCATGTCACTCCCCAAGTTCCTCTAAA 956
Query 1244 TGGTTCACTTTCGCGTCAAAGTTTGGCTTACATGCAGGCTGCTGCTCGCTACCTTAAGCA 1303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TGGTTCACTTTCGCGTCAAAGTTTGGCTTACATGCAGGCTGCTGCTCGCTACCTTAAGCA 1016
Query 1304 GGTCTCAAAAGCCGTTAAAAAGGAAATTGTTACATCTCACACTGGACCACAAACTTATGA 1363
||||||||| ||||||||||| ||||||||||| |||||||||| ||| |||||||||||
Sbjct 1017 GGTCTCAAAGGCCGTTAAAAACGAAATTGTTACGTCTCACACTGAACCGCAAACTTATGA 1076
Query 1364 AGCAGTACAAGAAACATATTCATGTTCATTGAGGTTAAAGAGCTCTCCTGAAGATGATCA 1423
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1077 AGCAGTACAAGAAACATATTCATGTTCATTGAGGTTAAAGAGCTCTGCTGAAGATGATCA 1136
Query 1424 AATTAAGACGCAACCTGGATCTGGCGAAACGTTTATTTTCTTACCAGATAGTCTTGGTGA 1483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AATTAAGACGCAACCTGGATCTGGCGAAACGTTTATTTTCTTACCAGATAGTCTTGGTGA 1196
Query 1484 TGATTTGATTATTGAAGTTCGAGATTCGAAGGCGCAACTTCTTGGCCGTGTCGTAGCTCA 1543
||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||
Sbjct 1197 TGATTTGATTATTGAAGTTCGAGATTCAAAGGGGCAACTTCTTGGTCGTGTCGTAGCTCA 1256
Query 1544 GCTAGCAGCTATGGCTGATGATCCG 1568
|||||||||||| ||||||||||||
Sbjct 1257 GCTAGCAGCTATAGCTGATGATCCG 1281
> Ahg940514 jgi|Araly1|940514|scaffold_601058.1
Length=3027
Score = 1463 bits (792), Expect = 0.0
Identities = 1596/1975 (81%), Gaps = 92/1975 (5%)
Strand=Plus/Plus
Query 1693 CAATATATCATGAACCAGAGCATGAAC-TAATTGGGAGAATCCAACTTACGT-TTAGTTA 1750
||||||||||||||||||||||||| | | |||||||||||||||||| | | | | ||
Sbjct 1085 CAATATATCATGAACCAGAGCATGACCGT-ATTGGGAGAATCCAACTT-CATATAAACTA 1142
Query 1751 CTCAAGTAGTTTAGATGAAAAAACTAAGTGTGGGTTGGTGGCAGAAACTTCAGCGTATGA 1810
|||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1143 CTCAAGCAGCTTAGATGAAAAAACTAAGTGTGGGTTGGTTGCAGAAACTTCAGCTTATGA 1202
Query 1811 TCTT-GTCCTAGAGGTGGCTATGAAAGCAGAACGATTTCAGCG-TAGAAATTTATT-ATT 1867
||| || | || |||||||||||||| || | ||||||||| | |||| | || |||
Sbjct 1203 -CTTGGTTTTGGAAGTGGCTATGAAAGCTGAGCAATTTCAGCGCCA-AAATCTGTTAATT 1260
Query 1868 TAAGGGCCCGTGGCATTGGATGATAACTCGATTTGCATCCTATTACGGGGTTTCAGATGC 1927
||||| || ||||| |||||| ||||||||||||||||||||||||| |||| |||||
Sbjct 1261 AAAGGG-CCATGGCACTGGATGGTAACTCGATTTGCATCCTATTACGGAATTTCGGATGC 1319
Query 1928 ATACACTAGATTAAGATATCTTTCTTATGTCATGGATGTCGCATCGCCTACCAAGGACTG 1987
||| || | ||||||||||||||| |||||||||||||| || |||||||| ||||||||
Sbjct 1320 ATATACAAAATTAAGATATCTTTCATATGTCATGGATGTTGCCTCGCCTACTAAGGACTG 1379
Query 1988 TCTTGATCTGATACATGATTTTCTATTC-CCTATTATAATGACAA-GCAACCACAGGGCT 2045
||||||||||||| |||||||||| || ||| || |||||| || |||| |||| ||||
Sbjct 1380 TCTTGATCTGATATATGATTTTCT-GTCGCCTGTTTTAATGA-AAGGCAATCACAAGGCT 1437
Query 2046 GTATTGAGTCATCAAGAGAATCGGTTACTTGGGGAAATTGACGAACAAATTCAGCAGATT 2105
||||||||||||||||||||||| || |||||||| ||||| |||||| |||||||||||
Sbjct 1438 GTATTGAGTCATCAAGAGAATCGCTTGCTTGGGGAGATTGATGAACAAGTTCAGCAGATT 1497
Query 2106 CTCGCTTCAG-CATTTGAGAATTATAAATCACTTGCTGAA-CTGTCTTTCTCCGGGATGA 2163
|| || || | |||| |||||||||||||| |||| |||| || ||||| || || || |
Sbjct 1498 CTTGC-TCTGACATTCGAGAATTATAAATCTCTTGATGAATCT-TCTTTATCTGGAATCA 1555
Query 2164 AAGATGTTTTTGAGTCTGCTACGGGGACTCCAGCACCTGCTATAGAATCAGCTGTCAAGC 2223
|||||||||||||| || |||| || | |||||| |||||||||| ||||| ||||||
Sbjct 1556 AAGATGTTTTTGAGCCTCCTACAGGAATTCCAGCGCCTGCTATAGCGCCAGCTATCAAGC 1615
Query 2224 TTTATGGTCTTCTCAACGATGTATTAACCCCCGAGGCACAGTTGAA-ACTCTGCAGATAC 2282
|||||||||||||||| || || |||| ||| |||||||| | || ||| | |||||||
Sbjct 1616 TTTATGGTCTTCTCAATGACGTGTTAAGCCCTGAGGCACAACT-AAGACTTTTCAGATAC 1674
Query 2283 TTTCAGGCTGCTTCAAAGAAGAGGTCAAGAAGACATTTATTGGACACAAACGATTTACTT 2342
|||||| |||||||||||||||||||||||||| | |||||||| || ||| || |||||
Sbjct 1675 TTTCAGACTGCTTCAAAGAAGAGGTCAAGAAGATACTTATTGGAAACGAACAATATACTT 1734
Query 2343 AACAACCGTAGTGAAGGTGTACCAGTTGATCCCATGGTGCTTGCAGCTTCGTATCAAAAG 2402
|||| | | | | || | || || | || | ||| |||| ||||| | |
Sbjct 1735 CACAATC--A-T--A-TTG-AGCA--TG--CACA---AG---GCA-CTTCTTATCAGAGG 1776
Query 2403 ATGAAGTCTCTAATCTTAAGCCTTAAAAATGAAATATCCACTGACATAGCGATTCATGAC 2462
||||||||| |||| || |||||||| | |||||| || ||||| ||||| || | | ||
Sbjct 1777 ATGAAGTCTTTAATTTTGAGCCTTAAGAGTGAAATCTCAACTGATATAGCCATCCGTAAC 1836
Query 2463 TGCAATGTGCTCCCAAGCTTTATAGACCTTCCAAATCATTCAGCGGCAATATATAGTGTT 2522
| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 1837 TACAATGTGCTCCCAAGCTTTATAGACCTTCCAAAACTTTCGGCGGCAATATATAGTGTG 1896
Query 2523 GATGTCTGCAATAGGCTCCGGGAATTTCTTCTCGTTTGGCCTCCTCCTGGACCATCACCT 2582
||| | | ||| || || |||||| |||| | | ||||| |||||| || | |||
Sbjct 1897 GATCTATTCAACAGACTAAGGGAATATCTTATTGCATGGCCCCCTCCTTCTGCAACGCCT 1956
Query 2583 GCGGTTGTTGAT-TTAGTTATTACAACTGCTGACTTTCAGAGA-GATCTCTCTAGCTGGC 2640
| ||||| || ||| | ||||| || ||||||||| | || ||||||||| |||||
Sbjct 1957 CCAGTTGTCGAGCTTA-TCATTACGACAGCTGACTTTGA-AGCCGATCTCTCTCGCTGGA 2014
Query 2641 ACATAAATCCTATTAAAGGTGGCGTTAATGCCAAGGAGCTTTT-CTATTCATATATCACA 2699
| |||||||| || |||||||| |||| |||||| |||||||| | |||||||||| ||
Sbjct 2015 ATATAAATCCAATCAAAGGTGGTGTTACTGCCAAAGAGCTTTTTC-ATTCATATATTACT 2073
Query 2700 ACCTGGATTGAAGAGAAAAGGCGAGTT-T-TATATGAACTCTGCAAG-CTAGAGACGTCA 2756
|| ||||| ||||||| ||| | || | ||||||| |||||||| | ||| ||| ||
Sbjct 2074 ACTTGGATCGAAGAGAGAAGATG--TTATCTATATGAGTTCTGCAAGTC-AGAAACGGCA 2130
Query 2757 AAAGCATGC-GTCGAGATTCCGGGATTGACTTCTCCTTTTGTCGATGAGATGTATGAGAG 2815
||| |||| || ||||||| || ||||| |||||||| || |||||||||||||||
Sbjct 2131 AAATCATGTAGT-GAGATTCAAGGCTTGACCTCTCCTTTAGTTGATGAGATGTATGAGTT 2189
Query 2816 ACTCAATGGGACACTTGATGAATACGATATCATCATTAGGCGGTGGCCAGAATACGCAAT 2875
|||||| | |||||||||||| || ||||||||||| ||||| ||||| ||||| ||
Sbjct 2190 ACTCAACGCGACACTTGATGAGTATGATATCATCATCAGGCGTTGGCCCGAATATGCGGC 2249
Query 2876 ATCCTTGGAGAAAGTTGTAGCAGACTCAG-AGAAGG-CAAT-AGTTGAAGCCAT-GGAGA 2931
||||||||||||| ||||||| || | | ||| || | || | ||||||| || |||||
Sbjct 2250 ATCCTTGGAGAAACTTGTAGCCGA-TGTGGAGA-GGTCTATTA-TTGAAGC-ATTGGAGA 2305
Query 2932 AACAATTTACTGA-GATTTTATCTCCGTTGAAGGAAAGTAAAATATTTGGCCTGAAA-AT 2989
| |||||| | || | |||| ||||||||||||||||| || ||| | |||||| |
Sbjct 2306 AGCAATTTTCGGAAG-TTTTGTCTCCGTTGAAGGAAAGCAAGGTATCTCCCCTGAAGTAC 2364
Query 2990 TGTCAAGAAATTCACCAAA--GG-CACAC-CTAATC-CTTATTCTGTTCCAAAAGAGCTT 3044
||| ||| ||| || ||| || | || |||||| || || ||||||||||||| |||
Sbjct 2365 -GTCCAGAGATTGACAAAAACGGGC-CAATCTAATCTCT-ATGCTGTTCCAAAAGAACTT 2421
Query 3045 GGAGTTCTTCTCAACTCAATGAAAAGAGTGCTTGACATTTTACGCCCGAGCATAGAGAAC 3104
||||||||| | || || ||||||||||||||||||| ||||| | || ||||| ||
Sbjct 2422 GGAGTTCTTTTAAATTCCATGAAAAGAGTGCTTGACACATTACGGTCAAGTATAGAAAAT 2481
Query 3105 CGCTTCAAA-TCTTGGAATTCATATATCCCTGATGGAGAAAACAGAGTCTTGGGAGAGCG 3163
|| |||||| | | |||| || ||| | ||||| |||||| ||||| ||||||||||
Sbjct 2482 CGGTTCAAAGTGT-GGAACTCTTATCTTCCTGACAAAGAAAAGAGAGTTTTGGGAGAGCA 2540
Query 3164 GTTAAGTGAGGTGACAGTATTGTTAAGATCCAAATTCAGAAGTTATATGCAAGCGCTTGT 3223
| | || || ||||| ||| | ||||| |||||||||||||||| ||||||||||| ||
Sbjct 2541 GCTGAGCGAAGTGACTGTACAGCTAAGAGCCAAATTCAGAAGTTACATGCAAGCGCTCGT 2600
Query 3224 GGAGAAACTTGCAGAAAATACGAGGATACAAAGTCACATGA-AGCTAAAGACCATCATCC 3282
||||||||||||||| ||||||||||||||||| ||||||| | | |||| ||||||||
Sbjct 2601 GGAGAAACTTGCAGAGAATACGAGGATACAAAGCCACATGAGAA-TGAAGAACATCATCC 2659
Query 3283 ACGACTTA-AGGGAAACCACAGCGGAACCGGATGTTAGAAACAGAATG-AC-GTCATTGA 3339
|||||||| ||| |||| ||||| ||||| || ||||||||||||||| | || ||||
Sbjct 2660 ACGACTTACAGG-AAACAACAGCAGAACCAGACGTTAGAAACAGAATGCAGAGT--TTGA 2716
Query 3340 AGGATTTGCTAGACAAAACCATCGATCATCTACACGGTGTTTTCTTAC-CAGATGTGTTT 3398
| ||||| |||||||| ||||| |||||||| || ||||||| | || | |||||||||
Sbjct 2717 AAGATTTACTAGACAAGACCATTGATCATCTGCATTGTGTTTTGTCACTC-GATGTGTTT 2775
Query 3399 GTAGCAATCTGCAGAGGAATCTGGGACCGAATGGGACAGGATGTGCTTCGTCTTTTGGAA 3458
||| ||| ||||||||||| |||||| || ||||||||||||| || || |||||||||
Sbjct 2776 GTATTAATATGCAGAGGAATATGGGACAGACTGGGACAGGATGTTCTGCGGCTTTTGGAA 2835
Query 3459 GACAGGAA-AGATAATGTGACTTGGCATAAAGGCCCAAGAATCGCAGTTTCTGTTTTGGA 3517
||||| || ||| || ||||||||| | |||||||| || ||||||||||||||| | ||
Sbjct 2836 GACAG-AAGAGACAAGGTGACTTGGTACAAAGGCCCGAGGATCGCAGTTTCTGTTCTAGA 2894
Query 3518 TGAAATCTTTGCGACACAAATGCAAAGCTTGCTTGGAAA--CGGTTTGAAGCCCGAGCAC 3575
||| || |||| ||| |||||||||||||| || || || || || ||| ||| |
Sbjct 2895 TGAGATATTTGTGACTCAAATGCAAAGCTTACTCGGGAATTCG-TTA-AAGGAAGAGAAT 2952
Query 3576 TTGGAGCCACCAAGATCGATGATGGAACT-CAGGTCTATGCTA-TGCAAAGATTC 3628
|||||| |||||||||||||||| || || | | |||||||| || ||||||||
Sbjct 2953 TTGGAGGCACCAAGATCGATGATTGAGCTTC-GATCTATGCTTGTGTAAAGATTC 3006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144809065265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5