BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65470.1
Length=1945
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496780 jgi|Araly1|496780|fgenesh2_kg.8__2596__AT5G65470.1 2580 0.0
> Ahg496780 jgi|Araly1|496780|fgenesh2_kg.8__2596__AT5G65470.1
Length=1844
Score = 2580 bits (1397), Expect = 0.0
Identities = 1692/1827 (93%), Gaps = 49/1827 (3%)
Strand=Plus/Plus
Query 13 TTCTTTTGAGTGTGTTgaagaagaagaagattaaaattcactaaaaacccgagaaaagtg 72
||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 1 TTCTTTTCAGTGTGTTGAAGAAGAAGAAGATTAAGATTCACTAAAACCCCGAAAAAAGT- 59
Query 73 gaagaagaaggaaggaagaagaagacaagagaGCATTCTGATTCATGTGACTCTGGTTTC 132
| ||| | | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 ---G--GAA-G-A--AAGAAGAAGACAAGAGAGCATTCTGATTCATGTGACGCTGGTTTC 110
Query 133 GTTTCTTTCTGTGTCTCTGCTGTGTCGT-TTTCTCGGCATATTTCTGATCTTTCGTTCTC 191
||||||||| || |||||||||||| | |||||||||| |||||| |||||||||||||
Sbjct 111 GTTTCTTTC--TGACTCTGCTGTGTC-TCTTTCTCGGCAAATTTCTCATCTTTCGTTCTC 167
Query 192 GGTTGGTT-TTTGGTTTCTGGGTATTGATTGATTGATTCAAAAGTCTTCAACTTTCCTGG 250
|| ||||| ||| ||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 168 GGCTGGTTGTTTCGTTTCTGGGTATTGATTGATTGATT-AAAAGTCTTCAACTTTCCCGG 226
Query 251 AAACTGGATCTGGGTTTATCCGTTTTTACTCGTCTGAGAAGAGAAAAAAGGATGAATCCT 310
|| || | || | | || | | | | || ||||||||||||| |
Sbjct 227 -AA----AT-T-GG---A--------T-CT-G---G-G-A-AG--AAAAGGATGAATCTT 258
Query 311 TATGATGCGAAAGACAGAAGATGGATTCTCTCTATGTTCTTCTTCGTCGTTTTGTTCTGC 370
||||||||||| ||||||||| ||||||||||| || | ||||||||||||||| |||||
Sbjct 259 TATGATGCGAATGACAGAAGAGGGATTCTCTCTGTGCTATTCTTCGTCGTTTTGCTCTGC 318
Query 371 AACAACGTTTCGACTTCGTCTTCTTCATCTGAAGTTATCACGATTAAGCCAAGACATTTA 430
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 319 AACAACGTTTCGACTTCGTCTTCTTCATCTGAAGTGATCACGATTAAGCCAAGACATTTA 378
Query 431 TCCTTGCTAAAGAGTGCTTTACAACGGTCAAGTGGAGAACAGTCTGATCTATGGAGGCCA 490
|| ||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 379 TCTTTGTTAAAGAGTGCTTTGCAACGGTCAAGTGGAGAACAGTCTGACCTATGGAGGCCA 438
Query 491 TTGACTGATCAAGGATGGAGTCCTTGTATTGATTTGGGAAATTCTCCTTCATTACCGGAT 550
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 439 TTGACTGATCAAGGATGGAGTCCTTGTATTGATTTGGGAAATTCCCCTTCATTACCGGAG 498
Query 551 AAAACCGCGGGATATGTTCAGGTATTTCTTGATGGAGGACTTAACCAGCAACGAATGGGA 610
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 499 AAAACCGCGGGATATGTTCAGGTATTTCTTGATGGGGGACTTAACCAGCAACGAATGGGG 558
Query 611 ATATGTGATGCTGTTGCAGTTGCGAAGATTTTAAACGCAACACTCGTGATCCCTTATCTT 670
||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||| ||||||
Sbjct 559 ATATGTGATGCAGTTGCGGTTGCCAAGATATTAAACGCCACACTCGTGATCCCGTATCTT 618
Query 671 GAAGTGAATCCTGTGTGGCAAGATTCAAGTTCTTTTGTTGATATTTTTGATGTCGATCAT 730
|||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 619 GAAGTGAATCCTGTGTGGCAAGATTCAAGTTCTTTTGTTGATATCTTCGATGTTGATCAT 678
Query 731 TTTATCGATTCTTTAAAAGATGACATAAGGGTGGTTAGAGAACTACCTGATGAATACTCT 790
||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 TTTATTGATGCGTTAAAAGATGACATAAGGGTGGTTAGAGAACTACCTGATGAATACTCT 738
Query 791 TGGAGTACAAGAGAGTATTACGGTACAGCAGTACGTGAAACACGAGTGAAAACCGCGCCT 850
|||||||||||||||||||||||||||||||| || ||||| || ||||||||||| |||
Sbjct 739 TGGAGTACAAGAGAGTATTACGGTACAGCAGTCCGAGAAACCCGTGTGAAAACCGCACCT 798
Query 851 GTTCATGCCTCTGCGAATTGGTATATTGAGAACGTCTCACCAGTTCTACAAAGTTATGGG 910
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 GTCCATGCCTCTGCCAATTGGTATATTGAGAACGTCTCACCAGTTCTACAAAGTTATGGG 858
Query 911 ATTGCTGCCATTTCTCCATTCTCTCACCGGCTATCATTCGACCACTTACCTGCTGAGATC 970
|||||||| |||||||||||||||||||| || || ||||| || |||||||||||||||
Sbjct 859 ATTGCTGCTATTTCTCCATTCTCTCACCGTCTGTCGTTCGATCATTTACCTGCTGAGATC 918
Query 971 CAACGACTAAGATGCAAAGTGAATTTCCAAGCTTTACGTTTTGTCCCTCACATTACATCA 1030
||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 919 CAACGGCTAAGGTGCAAAGTGAATTTCCAAGCTTTACGCTTTGTCCCTCACATTACATCA 978
Query 1031 CTCGGTGATGCTCTTGTCAGCCGCCTTAGAAACCCGTCATGGAGAAGCAATAAGGAACAG 1090
||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| |
Sbjct 979 CTCGGTGATGCTCTTGTGAGCCGCCTTAGAAACCCATCATGGAGAAACAATAAGGAACTG 1038
Query 1091 AAAAATGTTGATCATTTAGGAGACATGACCAACCCACACAGAAGACAAGAACCCGGGAAG 1150
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1039 AAAAATGTGGATCATTTAGGAGACATGACCAACCCACACAAAAGACAAGAACCCGGGAAG 1098
Query 1151 TTTGCTGTGCTTCATCTTCGCTTCGACAAGGACATGGCTGCGCATTCAGCGTGTGATTTT 1210
||||| || |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1099 TTTGCCGTACTTCATCTTCGCTTCGACAAGGACATGGCTGCACATTCGGCGTGTGATTTC 1158
Query 1211 GGCGGAGGCAAAGCCGAGAAACTCT-CCTTGGCGAAATACAGACAAATGATTTGGCAAGG 1269
|| ||||||||||||||||| || | | ||||||||||||||||||||||||||||||||
Sbjct 1159 GGTGGAGGCAAAGCCGAGAAGCT-TGCATTGGCGAAATACAGACAAATGATTTGGCAAGG 1217
Query 1270 AAGAGTGTTGAATTCTCAATTCACTGATGAAGAGTTAAGAAGTCAAGGACGGTGTCCTCT 1329
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1218 AAGAGTTTTGAATTCTCAATTCACAGATGAAGAGTTAAGAAGTCAAGGACGGTGTCCTCT 1277
Query 1330 AACACCAGAAGAAATGGGACTTCTTTTAGCTGCTTTCGGATTCGATAACAATACTCGTCT 1389
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1278 AACACCAGAAGAAATGGGACTTCTTTTAGCTGCTTTCGGATTCGACAACAATACTCGTCT 1337
Query 1390 CTATCTTGCATCCCACAAGGTGTATGGAGGAGAAGCTAGAATCTCAACATTAAGACAAGT 1449
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1338 CTACCTGGCATCCCACAAGGTATATGGAGGAGAAGCTAGAATCTCAACATTAAGACAAGT 1397
Query 1450 ATTCCCAAGAATGGAAGACAAAAGAAGTCTTGCATCTTCTGAAGAACGAGCTCGAATCAA 1509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 ATTCCCAAGAATGGAAGACAAAAGAAGTCTTGCATCTTCTGAAGAACGAGCTCGAATCAA 1457
Query 1510 GGGCAAAGCTTCTTTATTAGCTGCACTTGACTACTACGTTAGTATGCACAGCGACATTTT 1569
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1458 AGGCAAAGCTTCTTTATTAGCTGCACTTGATTATTACGTTAGTATGCACAGCGACATTTT 1517
Query 1570 CATCTCCGCATCACCTGGAAACATGCACAACGCTCTTGTTGGTCATCGAACATTCGAGAA 1629
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1518 CATCTCTGCATCACCTGGAAACATGCACAATGCTCTTGTTGGTCATCGAACATTCGAGAA 1577
Query 1630 TCTCAAGACGATCAGACCAAACATGGCGTTAATAGGACAGCTTTTCCTCAACAAAAGCAT 1689
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1578 TCTCAAGACGATCAGACCAAACATGGCGTTAATAGGACAGCTGTTCCTCAACAAAAGCAT 1637
Query 1690 CACTTGGGTAGATTTTCAGCAAGCGCTTGGTGAAGGACATGTGAATAGACAAGGACAGAT 1749
|||||||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 1638 CACTTGGGTAGATTTTCAACAGGCACTTGGTGAAGGACATGTGAATAGACAAGGACAGAT 1697
Query 1750 CCGGTTAAGGAAACCAAAACAGTCGATTTATACTTATCCTGCTCCTGATTGTATGTGCCA 1809
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 CCGGTTAAGGAAACCTAAACAGTCGATTTATACTTATCCTGCTCCTGATTGTATGTGCCA 1757
Query 1810 TGTTTGATTAGTTTTTAAAGTCTTGAT 1836
||||||||||||| ||||||| |||
Sbjct 1758 TGTTTGATTAGTTA--AAAGTCT-GAT 1781
Score = 84.2 bits (45), Expect = 3e-15
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1898 GTTTAGATTTGTGTTCTTGAGGCTTAATAAAAAGAGTATAGTTTGATT 1945
|||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 GTTTAGCTTTGTGTTCTTGAGGCTTAATAAAAAGAGTATAGTTTGATT 1844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73095180155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5