BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65490.1
Length=2142
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496782 jgi|Araly1|496782|fgenesh2_kg.8__2598__AT5G65490.1 3269 0.0
> Ahg496782 jgi|Araly1|496782|fgenesh2_kg.8__2598__AT5G65490.1
Length=2150
Score = 3269 bits (1770), Expect = 0.0
Identities = 2036/2160 (94%), Gaps = 36/2160 (2%)
Strand=Plus/Plus
Query 8 ATGTCGAAGCCTTCTTCTTCACCT-TTCTTCTCTGAAACCACTTCTCGTCT-CCAAGACG 65
||||||||||||||||||||| | ||||||||||||||| |||||||||| || ||||
Sbjct 1 ATGTCGAAGCCTTCTTCTTCA-GTCTTCTTCTCTGAAACCTCTTCTCGTCTACC-TGACG 58
Query 66 AAACAGTTTTCTTCTCCT-TATTCCCTGACTCATC-C-CT-------C---T------CC 106
| || |||||||||| || ||||||| |||||||| | || | | ||
Sbjct 59 AGACCGTTTTCTTCT-CTATATTCCCGGACTCATCTCTCTCCAGCGCCGGATCAGAAACC 117
Query 107 TCCGCCGCTCTTCAGTCACTTCACTTAGAAATCATCGATTTCGTTTCTCCGTTTACTTCT 166
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 118 TCCGCCGCTCTTCAGTCACTTCACTTGGAAATCATCGATTTCGTTTCTCCATTTACTTCT 177
Query 167 CCTTACATATGGCAGCACGAGCCTTtctctctctcaatcgctctctcttcctctTGTGCT 226
|||||||||||||| ||||||||||||||||| || || |||||||||||||||||||||
Sbjct 178 CCTTACATATGGCAACACGAGCCTTTCTCTCTATCCATAGCTCTCTCTTCCTCTTGTGCT 237
Query 227 TGTACCAATACTGCTATACCTCATCTCCACGGGAAGCTCAAGTACGGTGACAATCTCGAA 286
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 238 TGTACTAATACTGCTATGCCTCATCTTCACGGGAAGCTCAAGTACGGTGACAATCTGGAG 297
Query 287 GACGAATGGTTCGCTGTGTTTTTACTTTTTCGAATCTCCGCCGCGTTTCCGTCTAATTCG 346
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 298 GACGAATGGTTCGCTGTGTTCTTGCTTTTTCGAATCTCCGCTGCGTTTCCGTCTAATTCG 357
Query 347 ATTCGTGTTTGGGACACTGACGGCGAGTTTCTCCTAATCGAAGCTGCTTTTCATCTCCCG 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATTCGTGTTTGGGACACTGACGGCGAGTTTCTCCTAATCGAAGCTGCTTTTCATCTCCCG 417
Query 407 CGTTGGCTTAATCCGGAGACTAGTCTCAATCGTGTCTTCATTCGCGGTGGTGACCTCCAC 466
|||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 418 CGTTGGCTCAATCCGGAGACTAGTCTCAATCGTGTTTTCATTCGCGGCGGAGACCTCCAC 477
Query 467 ATAGTTCCCAGAAGCCGTTTGCCTGATCCTTCTTTGGTTGCGTCTCTACGGTTTCTAATC 526
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 478 ATCGTTCCCAGAAGCCGTTTGCCTGATCCTTCTTTAGTTGCGTCTCTGCGGTTTCTAATC 537
Query 527 GAGCGTGGTAACGAATCTCGTGCGTCGGATTCAGTTCAATCTGCGTTGAAGAATCGGATA 586
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 538 GAGCGTGGTAACGAATCTCGTGCGTCGGATTCAGTTCAATCCGCGTTGAAGAATCGGATT 597
Query 587 TCTGATTATCCTGAAAGAGCGTGGAGGAATATGCATCGTGTTAGGGTTAGGGTTCCGGTA 646
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 598 TCTGAGTATCCCGAAAGAGCGTGGAGGAATATGCATCGTGTTAGGGTTAGGGTTCCGATA 657
Query 647 TCGGTAGCTCAAGTGATTAGGCATGAACCTTTCTTGATCTCACTTGCTGTGGAAGGGTTT 706
|| |||||||||||| |||||||||||||| ||||||| || ||||| || |||||||||
Sbjct 658 TCAGTAGCTCAAGTGCTTAGGCATGAACCTCTCTTGATTTCGCTTGCAGTAGAAGGGTTT 717
Query 707 TACGATCGTGATATGGATTCAATGAAACACGCAGCGAAGATGGAGAAGTTTCTGAGCAAA 766
|| |||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||
Sbjct 718 TATGATCGTGATATGGATTCAATGAAATACGCAGCGAAGATGGAGAAGTTTTTGAGTAAA 777
Query 767 GGAAGAGAAGAGAAGCTTGTGCTTGTTCTTGTCAAGATGTCTCGTGCTATGTATGGGCAG 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GGAAGAGAAGAGAAGCTTGTGCTTGTTCTTGTCAAGATGTCTCGTGCTATGTATGGGCAG 837
Query 827 CTAGTGCAGCAGAAGTTTCAAGCACCGAATTGTTATCCAATGCCTAGTGTCAGTGACAGG 886
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 838 CTAGTGCAGCAGAAGTTTCAAGCACCAAATTGTTATCCAATGCCTAGTGTCAGTGACAGG 897
Query 887 GATGCTTTCTCTGAAGCTGAGCTAGGGATGAAGATAGCTTGTGGTATGGAAATGATGTAC 946
||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 898 GATGCTTTCTCCGAGGCTGAGCTAGGGATGAAAATAGCTTGTGGCATGGAAATGATGTAT 957
Query 947 CAGCAGAGGAAGAAGGAAGGAGAAGATGGGAAAGGGATTAGTTGGAGCAAGTATAAAGAC 1006
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 958 CAGCAGAGGAAGAAGGAAGGAGAAGATGGGAAAGGGATTAGCTGGAGCAAGTATATAGAC 1017
Query 1007 AATCTTGAGAAGTATGGTTATTTTGAAGGATTGCTTTCTGGTTCGAAGGAGTATAAGAGG 1066
|||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1018 AATCTTGAGAAGAATGGTTATTTTGAAGGATTGATTTCTGGTTCGAAGGAGTACAAGAGG 1077
Query 1067 TTGATGGAGAATGCTGAGGAATACCACCAGAAGAGTTCTTCGTTTTCGAGGACTAGAGAC 1126
|||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||
Sbjct 1078 TTGATGGAGAATGCTGAGGAATACTACCAGAAGAGTTCTTCGTTTTCAAGGACAAGAGAC 1137
Query 1127 ATTATGAGTGCACCGGTGAGACGTATTGATGAGATTCTTGCTTTACCTTATTCGGAGGAT 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ATTATGAGTGCACCGGTGAGACGTATTGATGAGATTCTTGCTTTACCTTATTCGGAGGAT 1197
Query 1187 GACTTTAAGGGCCAGGAAGTTCCTGCTTCTGACAATGATTCTTGGCTCTACGATGGTGAA 1246
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GACTTTAAGGGTCAGGAGGTTCCTGCTTCTGACAATGATTCTTGGCTCTACGATGGTGAA 1257
Query 1247 GATGAACTAAACTCTGTTCTTCAAGAGAGGCAGAAAGAGATGGAGTTTTATAACTCAAAG 1306
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GATGAGCTAAACTCTGTTCTTCAAGAGAGGCAGAAAGAGATGGAGTTTTATAACTCAAAG 1317
Query 1307 AAGGAACGCAAAAATAAAGGTAAGGAGAAGCAAGAAGCTGGAAGCTCATCTGATGCAAAC 1366
|||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1318 AAGGAAAGCAAAAAGAAAGGTAAGGAGAAGCAAGAAGCTGGAAGCTCATCTGAAGCAAAC 1377
Query 1367 ATGAACAATTTTGATCTCGGTGATATCTCAAAGTCGATGCAGCAATTCATGCACAAGGTA 1426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 ATGAACAATTTTGATCTCGGTGATATCTCAAAGTCGATGCAGCAATTCATGCACAAGGTA 1437
Query 1427 TCAAGCTACAAAGGAGCAGAAGTTCCAGAAAACAGGGATTTCAAAGAAGTGAGTATAGAT 1486
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1438 TCAAGCTACAAAGGAGCAGAAGTTCCAGAAAACAGGGATTTCAAAGAAGTGAATCTAGAT 1497
Query 1487 GTTGATCGTTTCATGAAAGATATTGAGTCAATGCTAGGAAGCCAAGGTCGTGACGAACAA 1546
||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1498 GTTGACCGTTTCATGAAAGATATTGAGTCAATGCTAGGGAGCCAAGGTCGTGACAAACAA 1557
Query 1547 GCTGATGATGACAGTGATGGCTCTGAAGGATCTTCCATGGACATGGATTTTGATGACGTT 1606
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1558 GCTGATGATGACAGTGATGGCTCTGAAGGATCTTCTATGGACATGGATTTTGATGACTTT 1617
Query 1607 GAAGATGATAGCGAAGGAGAAGAATCTAACGAAGATGCTAAGGAAAGCTTTGAGGAATCC 1666
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1618 GAAGATGATAGCGAAGGAGAAGAGTCTAACGAAGATGCTAAGGAAAGCTTTAAGGAATCC 1677
Query 1667 TACTATGGAGCAATGAATGAGGAACTGAAAAACTCAACTCTTGAGAAAAGCTTTGAAAAT 1726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1678 TACTATGGAGCAATGAATGAGGAACTGAAAAACTCAACTCTTGAGAAAAGCTTTGAACAT 1737
Query 1727 GTGAATCAACAACATTCTTCTAAGCAAAACGAGGAATCATCAAAAACTAGAGATGAGAAG 1786
||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||
Sbjct 1738 GTGAATCAACAACATTCTTCTAAGCAAAAAGAGGAATCATCAAAGACTTCAGATGAGAAG 1797
Query 1787 GATGATGA-G--TTTACACCAGTTGATGCAGATTTTAACCTTGTTAAGAACCTACTTGAA 1843
|||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1798 GATGATGATGAATTTACACCAGTTGATGCAGATTTTAACCTTGTTAAAAACCTACTTGAA 1857
Query 1844 TCCTACTCTTCACAACAAGGACTTCCTGGTCCTGCTTCCAATTTGCTCGGCCTCATGGGT 1903
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 TCCTACTCTTCACAAGAAGGACTTCCTGGTCCTGCTTCCAATTTGCTCGGCCTCATGGGT 1917
Query 1904 TTGCAGCTTCCAAAAGATTCCGGCGACAAAAACTGAATGCT-TATCAAAA-TGTAGTTTG 1961
||||||||||| || ||||| ||||||||||||||||||| | |||||| |||||||||
Sbjct 1918 TTGCAGCTTCCCAAGGATTCTAGCGACAAAAACTGAATGCTGT-TCAAAAATGTAGTTTG 1976
Query 1962 TTTTTGGGTTCACTTTGTTTAATCACATAATCGTGAGTAACGTTGTTGGGGAAGTTTTTG 2021
||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 1977 TTTTTGGGTTCACTTTGTTTAATCACATAATTGTAAGTAACGTTGTTGGGGA-GTTTTTT 2035
Query 2022 TGTTGTCGAAAGTAAGCACATGACATGTGATTTCAAGAAAACAACATATGTACATGTACA 2081
| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2036 TTTTGTCGAAAGTAAGCACATGACATGTGATT-CAAGAAAACAAAATATGTACATGTACA 2094
Query 2082 TTACTACTATTACACATCATCAAACCACAAAGGAACAAAAGAAAAAAGAttttttttttt 2141
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2095 ---CTACTATTACACATCATCAAACCACAAAGGAACAAAAGAAAAA-GATTTTTTTTTTT 2150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80598958420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5