BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G65495.1

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg496783 jgi|Araly1|496783|fgenesh2_kg.8__2599__AT5G65495.1         702    0.0  


> Ahg496783 jgi|Araly1|496783|fgenesh2_kg.8__2599__AT5G65495.1
Length=485

 Score =  702 bits (380),  Expect = 0.0
 Identities = 454/488 (93%), Gaps = 12/488 (2%)
 Strand=Plus/Plus

Query  1    CGAAGAATTGATTTTTGTGTTTATCTTTCCTTTTACGATGTGTTACGGTCACAATCAATC  60
            ||||||||||||||||||| || ||||||| |||||||||||||| ||||||||||||||
Sbjct  1    CGAAGAATTGATTTTTGTG-TTCTCTTTCC-TTTACGATGTGTTATGGTCACAATCAATC  58

Query  61   GTTGTCGTCGCGAAGCAGTCTCCGTCGCCGATCGCATGACGGAGAAGATGATTCA---GT  117
            ||| |||||||||||||| ||||||||||||||||| |||||||| || ||||||   ||
Sbjct  59   GTTTTCGTCGCGAAGCAGCCTCCGTCGCCGATCGCACGACGGAGATGACGATTCAGTGGT  118

Query  118  GGTAGACGATCTTCGAGACCGGCTGGCGGAAACCGAGGCGCGGCTGAGAAGAGCAAGGGC  177
            |||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  119  GGTAGAAGATCTTCGCGACCGGCTGGCGGAAACCGAGGCGCGGCTGAGACGAGCAAGGGC  178

Query  178  GAGAGAAGCTGAGCTAAGCCGGAGGTTGGAGCATATGAAGAGATTCGTTTCGGTGATGGA  237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  GAGAGAAGCTGAGCTAAGCCGGAGGTTGGAGCATATGAAGAGATTCGTTTCGGTGATGGA  238

Query  238  GATCATTGAGACTTTCTTGGAAAGACGATTCCAAGAGCAGAAAGATCGAATTGCTCGCCT  297
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  239  GATCATTGAGACTTTCTTGGAACGACGATTCCAAGAGCAGAAAGATCGAATTGCTCGCCT  298

Query  298  TTTCTCTCCTGTATCCACGAAATAAAA---AAGGcttcttcttccttttg-tttgtttct  353
            ||||||||||||||| || ||||||||   |||||||||||||||| ||| |||||||||
Sbjct  299  TTTCTCTCCTGTATCGACTAAATAAAAGGGAAGGCTTCTTCTTCCTCTTGCTTTGTTTCT  358

Query  354  tctttttgttgtgggatctctttagttttggttgtcccttgtctgtttgt-gtttgATAG  412
            || |||||||||||||||| |||| |||||  |||||||||| ||||||| |||||||||
Sbjct  359  TCCTTTTGTTGTGGGATCTTTTTACTTTTGACTGTCCCTTGTTTGTTTGTTGTTTGATAG  418

Query  413  TAGCTAATTTCGAAGAACCATAGATTTTGTTTTGTTGAAGCTTAAGGTAAAA-TGAAAAG  471
            |||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct  419  TAGCAAATTTCTAAGAACCATAGATTTTGTTTTGTTGAAGCTTAAGGTAAAAATGAAA-G  477

Query  472  CTATGTGC  479
            ||||||||
Sbjct  478  CTATGTGC  485



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21977619264


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5