BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65500.1
Length=2376
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332767 jgi|Araly1|332767|fgenesh1_pm.C_scaffold_8002110 2926 0.0
> Ahg332767 jgi|Araly1|332767|fgenesh1_pm.C_scaffold_8002110
Length=2304
Score = 2926 bits (1584), Expect = 0.0
Identities = 1835/1954 (94%), Gaps = 25/1954 (1%)
Strand=Plus/Plus
Query 446 GGAAATCGAAGAGTGCGATAAGCGGATCGTTCTATGTTTATCAAAACAAACCAGAGTTTT 505
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 353 GGAAATCGAAGAGTGCGATAAGCGGATCGTTCTACGTTTATCAAAACAAACCAGAGTTTT 412
Query 506 GCGAGTTTTATATAATTTGTGGAGGCAAAATGGTTTCACTAAAGA-A-TG-ATG-TGAAC 561
|||| || ||||||||||||||||||||||||||||||||||||| | | ||| ||
Sbjct 413 GCGAATTATATATAATTTGTGGAGGCAAAATGGTTTCACTAAAGAGAGAGAATGATG-TG 471
Query 562 AACAACAATAGCAATATCAGAAGCTGGATTGGTAAGATGTTTCATGATCCAGGAAGAAAT 621
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 472 AACAACAATAGCAATATCAGAAGCTGGATTGGTAAGATGTTCCATGATCCAGGAAGAAAT 531
Query 622 CTAGACCGTTCATCTGGCAACAATGATGATCCAACGGCTAGTGGAAGTTCATGGGATAAG 681
|||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 532 CTAGACAGTTCATCCGGCAACAATGATGATCCAACGTCTAGTGGAAGTTCATGGGATAAG 591
Query 682 AATTTACAGGAGATAGAGAATTATTTCCAGCAGTTATTGAGTTTGAATCTTGCAGAAGAA 741
||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||
Sbjct 592 AATTTACAGGAGATAGAGATTTATTTCGAGCAGTTATTGAGTTTGAATCTTGAAGAAGAA 651
Query 742 G-AAACCGAAAACGTTGTTGAAGAAGAACAAGAGGATGATGATGATGTGGCACTAAACGT 800
| ||| |||||||||||||||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 652 GTAAA-CGAAAACGTTGTTGAAGAAGAACATGAGGAAGATAATGATGTGGCACTAAACGT 710
Query 801 GCTGCAACATATG---GT-------AA---AGA-TA-CT---AAGAAAGGTAAATGAAGC 842
||||||||||||| || || ||| || | ||||||||| ||||||||
Sbjct 711 GCTGCAACATATGAACGTAGCAGAGAAGTTAGAGTATGTGAGAAGAAAGGTTAATGAAGC 770
Query 843 TAAGCTGATGATAGATGAGAAAAGCAGAGAAGTCAAAGTCAACGCTGAAAGATCAAACAG 902
|||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||
Sbjct 771 TAAGCTGATGATAGATGAGAAAAGAATAGAAGTCAAAGTCAACGCTGAAAGATCAGACAA 830
Query 903 AGCTGAATGGGCAATCTCTTTATGCAATAGCAGAATTGGAGAATTTGAAGCTTGGATTAA 962
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 831 AGCTGAATGGGCAATCTCTTTATGCAATAGCAGAATTGAAGAGCTTGAAGCTTGGATTAA 890
Query 963 AGAAGAAAGCGAGAGACGAGAGAAACTTCAAGCGACGTTGGACTCGGATAAAGAATGTAT 1022
|||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||
Sbjct 891 AGAAGAAAGCGAGAGACGAGAGAAACTTCAAGTGACGTTAGATTCGGATAAAGAATGTAT 950
Query 1023 TGAAGAAGCGAAGAACTATGTTGAAAAAGGAAAAACAAAGCTACATTCACTTGCAGAGCT 1082
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 CGAAGAAGCGAAGAACTATGTTGAAAAAGGAAAAACAAAGCTACATTCACTTGCAGAGCT 1010
Query 1083 TCAAGAAGTGCTCTCAAGCAAAGTTAAGACGATGATGGAGGCTAAATCACAGGCTGAGGT 1142
|||||||| ||||||||| ||||||||||| ||||||||||||||||| ||| | |||||
Sbjct 1011 TCAAGAAGAGCTCTCAAGTAAAGTTAAGACAATGATGGAGGCTAAATCGCAGACGGAGGT 1070
Query 1143 CGAGCTAGAGAGGGTTGTGTTACAGAGAGGAGAGATGATAACGGAGATTGAGAAACTTAG 1202
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1071 CGAGCTAGAGAGGGTTGTGTTACAGAGAGGAGAGGTGATAATGGAGATTGAGAAACTTAG 1130
Query 1203 GAGTCAGAGAGACGTGTTCAACCGTAGGATTGAGTTTTGCAAGGAGAGAGAGGTGATAGG 1262
|| ||| ||||| || ||||| ||||||||||||||||||||| ||| ||||| ||||||
Sbjct 1131 GAATCAAAGAGATGTTTTCAATCGTAGGATTGAGTTTTGCAAGAAGAAAGAGGCGATAGG 1190
Query 1263 TTCGGTTTCGAAGGAAGAAGTGAAGTGTGGGTATAGAGAGTATGTTGCAGAGGATATCAG 1322
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1191 TTTGGTTTCGAAGGAAGAAGTGAAGTGCGGGTATAGAGAGTATGTTGCAGAGGATATCAG 1250
Query 1323 ACTGGCTACAGAGACTTATTCTGATCGACTGAGATTGAAATCTGGTGGTAACTGGACAAA 1382
|||||| ||||||| ||||||||||||| |||| |||||||||||||| || ||||||||
Sbjct 1251 ACTGGCAACAGAGAGTTATTCTGATCGATTGAGGTTGAAATCTGGTGGAAATTGGACAAA 1310
Query 1383 TGTGTACCGAGGAAGGATCAAACATACAACTGTGGCTGTGAAAGTGATTGGTGATAGTTT 1442
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1311 TGTGTACCGAGGAAGGATCGAACATACAACTGTGGCTGTGAAAGTGATTGGTGATTGTTT 1370
Query 1443 ATCAGATGAGGCTTTTGGAGCAAAAGTTAAGCTTTTGAATGAGATTCGGCATCCTAACTT 1502
||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||| ||
Sbjct 1371 ATCAGATGAGGATTTTGGAGCAAAAGTTAAGCTTTTGAATGAAATTAGGCATCCTAATTT 1430
Query 1503 GGTAGCAATTGCTGGGTTTTGTTCACAAAGGCCTAAATGCCTACTCTTTGAGTACATGCA 1562
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1431 GGTAGCAATTGCTGGTTTTTGTTCACAAAGGCCTAAATGCATACTCTTTGAGTACATGCA 1490
Query 1563 TAATGGGAACTTGAGGGATAATCTATTCACATCACAGAGGAAATCGAGAAGAAGCAAGAT 1622
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1491 TAATGGGAACTTAAGGGATAATCTATTCACATCGCAGAGGAAATCGAGAAGAAGCAAGAT 1550
Query 1623 ACTGAAATGGCATGATAGGATTCGTATAGCTCATCAGGTTTGCTCTGGACTAGGATTTCT 1682
|||||||||||||||||||||||||||||| || |||||||||||||| || || |||||
Sbjct 1551 ACTGAAATGGCATGATAGGATTCGTATAGCACACCAGGTTTGCTCTGGTCTCGGGTTTCT 1610
Query 1683 CCATTCGGTTAAGCCTAAACCGATTGTCCATGGTCGCCTTACGCCGTCTAAGATCCTCTT 1742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 CCATTCGGTTAAGCCTAAACCGATTGTCCATGGTCGCCTTACGCCGTCTAAGATCCTCTT 1670
Query 1743 GGACCGTAACCTTGTTCCGAAAATAACCGGTTTTGGACTTATAATGCATAGTGATCAATC 1802
|||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct 1671 GGACCGTAACCTTGTTCCGAAAATAACCGGGTTTGGATTTATAATGCATAGCGATCAATC 1730
Query 1803 TGATACGAAACCTGATGTGATGGCGTTTGGGGTTTTGCTTCTGCATCTTTTAACCGGGAG 1862
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1731 TGATACGAAACCTGATGTGATGGCTTTTGGGGTTTTGCTTCTGCATCTTTTAACCGGGAG 1790
Query 1863 GAACTGGCATGGTTTGCTCAAGGCGATGTCTATGAACCAGACAAGTATTCTCAGGGATTT 1922
|||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1791 GAACTGGCCTGGTTTGCTCAAGGCAATGTCTATGAACCAGACAAGCATTCTCAGGGATTT 1850
Query 1923 GGATCAAACCGCTGGTAAGTGGCCACTCGAGTTAGCTAAAGAGTTTGGTGCACTTGCAGT 1982
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1851 GGATCAAACAGCTGGTAAGTGGCCACTCGAGTTAGCTAAAGAGTTTGGTGCGCTTGCAGT 1910
Query 1983 GAAGTGTTCTTCAGTTAACAGAGGAGGAAACATGGATTTTTCAACCAAAGAGATAATGGA 2042
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1911 GAAGTGTTCTTCAGTTAACAGAGGAGGGAACACAGATTTTTCAACCAAAGAGATAATGGA 1970
Query 2043 AGAGCTTGGTAAGATAAGGGAAAAAGCCGATGAGTTTAAAACCAAAGGAGGGTACGAGGA 2102
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1971 AGAGCTTGGTAAGATAAGGGAAAAAGCCGATGAGTTTAAAACCACAGGAGGGTACGAGGA 2030
Query 2103 AGCAACCAATTCAAACATGGATGAAGGAGATCCGAATGACATACCAAGTGTTTTCATGTG 2162
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 AGCAACCAATTCAAACATCAATGAAGGAGATCCGAATGACATACCAAGTGTTTTCATGTG 2090
Query 2163 TCCAATACTTCAGGAAGTAATGAAGAATCCACACGTAGCAGCAGATGGGTTTTCGTATGA 2222
|||||||||||||||||| |||||||||||||| || |||||||| ||||||||||||||
Sbjct 2091 TCCAATACTTCAGGAAGTGATGAAGAATCCACATGTTGCAGCAGACGGGTTTTCGTATGA 2150
Query 2223 GCTCGAAGCCATACAGGAATGGCTAAGCATGGGACATGACACATCTCCAATGACAAACCT 2282
||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2151 GCTTGAAGCCATAGAAGAATGGCTAAGCATGGGACATGACACATCTCCAATGACAAATCT 2210
Query 2283 GAGACTCGATTACCAGATGCTTACACCAAATCACACCCTTCGTTCTCTTATTCAAGACTG 2342
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 2211 GAGACTCGATTACCAGATGCTTACACCAAATCATACCCTTCGTTCTCTGATTCAAGACTG 2270
Query 2343 GCATAGCAAAAGAGCAGCACAAGCTTCCTCTTAA 2376
|||||||||||||||||||||||||||||| |||
Sbjct 2271 GCATAGCAAAAGAGCAGCACAAGCTTCCTCCTAA 2304
Score = 505 bits (273), Expect = 7e-142
Identities = 305/320 (95%), Gaps = 3/320 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGAAACAAAGACTCACGAATT-G--GAAGTAGAAGCAGAATCAGGATCAAGAATG 57
|||||||||||||||| ||| ||||| | |||| ||||| ||||| |||||||| ||||
Sbjct 1 ATGGAGGAAACAAAGAATCAAGAATTGGAAGAAGAAGAAGTAGAATTAGGATCAATAATG 60
Query 58 GAGAAAGTATATATAGCTGTAGGAAACGATGTACAAGAAGGTTACAAGACGATTCATTGG 117
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 GAGAAAGTATATATAGCTGTAGGAAACGATGTACAAGAAGGTCACAAGACGATTCATTGG 120
Query 118 GCTTTAAAGAAATGGAACAACATACCTATCTCCATTGTTCTTCTTCATCTCTGCAATATT 177
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 121 GCTTTAAAGAAATGGAACAACACACCTATCTCCATTGTTCTTCTTCATCTCTGCAACATT 180
Query 178 TCTCAAGATTTTGTTTACACCCCTTTTGGGAAGCTTCCAGCGAGTTCTGTGAGCGAGGAA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 TCTCAAGATTTTGTTTACACCCCTTTTGGGAAGCTTCCAGCGAGTTCTGTGAGTGAGGAA 240
Query 238 AAGCTTCAAGTTCTAAGGAAATACGAGGATCAAAAGATCGACAAGTTGCTGTCCAAATAC 297
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 241 AAGCTTCAAGTTCTAAGGAAATACGAGGAACAAAAGATCGACAAGTTGTTGTCCAAATAC 300
Query 298 ATTACTTTTTGTGGAAAGGT 317
||||||||||||||||||||
Sbjct 301 ATTACTTTTTGTGGAAAGGT 320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89512075750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5