BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65510.1
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918350 jgi|Araly1|918350|Al_scaffold_0008_3101 1914 0.0
Ahg940520 jgi|Araly1|940520|scaffold_601064.1 108 1e-22
> Ahg918350 jgi|Araly1|918350|Al_scaffold_0008_3101
Length=1329
Score = 1914 bits (1036), Expect = 0.0
Identities = 1243/1339 (93%), Gaps = 30/1339 (2%)
Strand=Plus/Plus
Query 175 ATGGCGGATTCAACAACCT-TATCTAC--TTTT---TTCG---AT-CATTCTCAGACTCA 224
|||||||||||||||| || |||| || |||| |||| || ||||||||| ||||
Sbjct 1 ATGGCGGATTCAACAA-CTCTATCCACTTTTTTCGATTCGCAAATCCATTCTCAGGCTCA 59
Query 225 GATTCCAAAGCTGGAAGATTTCCTCGGTGATTCCTTTGTCCGTTACTCTGATAACCAAAC 284
|||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 60 GATTCCAAAGCTCGAAGATTTTCTCGGTGATTCCTTCGTTCGTTACTCTGATAACCAAAC 119
Query 285 AGAGACCCAAGACTCTTCTTCTCTCACTCCATTCTACGATCCACGTCACCGCACCGTTGC 344
|||||| |||||||||||||||||||||| ||||||||||| |||||||| ||||| |||
Sbjct 120 AGAGACACAAGACTCTTCTTCTCTCACTCGATTCTACGATCTACGTCACCACACCGATGC 179
Query 345 CGAAGGAGTTACAGGGTTCTTCTCTGATCATCATCAGC--CA-GATTTCAAGACGATAAA 401
|| ||||||| ||| ||||||||| ||||||||||||| || |||||||||||||||||
Sbjct 180 CGGAGGAGTTTCAGAGTTCTTCTCCGATCATCATCAGCAGCACGATTTCAAGACGATAAA 239
Query 402 CTCGGGACCAGAAATCT-TCGATGACTCAACAACTTCCAACATCGGTGGTACTCATCTCT 460
||||||| ||||||| | |||||||||| ||| ||||||||||||||||||||||||| |
Sbjct 240 CTCGGGATCAGAAAT-TGTCGATGACTCCACAGCTTCCAACATCGGTGGTACTCATCTTT 298
Query 461 CCAGTCACGTGGTGGAGTCATCAACGACGGCGA-AGTTAGGGTTTAACGGTGATTGCACC 519
| ||||||||||||||||||||||||||||| | |||||||||||||||||| ||| |
Sbjct 299 CTAGTCACGTGGTGGAGTCATCAACGACGGC-AGAGTTAGGGTTTAACGGTGGTTG---C 354
Query 520 ACCACCGGAGGAGTTTTGTCTCTAGGGGTTAACAACACATCAGATCAAC-CTT--TGAGC 576
||||||||||||| ||||||||||||||||||||||||||||||||||| || | |||
Sbjct 355 ACCACCGGAGGAGCTTTGTCTCTAGGGGTTAACAACACATCAGATCAACATTTAATAAGC 414
Query 577 TGTAACAATGGCGAGAGAGGTGGAAACAGTAACAAGAAGAAAACAGTTTCTAAGAAGGAA 636
||||| |||||||||||||||| |||||| ||||||||||| ||||| ||||||||||||
Sbjct 415 TGTAATAATGGCGAGAGAGGTGAAAACAGCAACAAGAAGAAGACAGTGTCTAAGAAGGAA 474
Query 637 ACATCAGATGATTCAAAGAAGAAGATTGTCGAAACATTGGGACAAAGAACTTCAATTTAT 696
||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 475 ACATCGGATGATTCAAAGAAGAAGACTGTCGAAACATTGGGACAAAGAACTTCGGTTTAT 534
Query 697 CGTGGAGTCACCCGACATAGATGGACTGGAAGATACGAAGCGCATCTATGGGATAACAGC 756
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||
Sbjct 535 CGTGGAGTCACCCGACATAGGTGGACTGGAAGATATGAAGCACATCTATGGGACAACAGC 594
Query 757 TGTAGGAGGGAAGGTCAAGCCAGAAAAGGACGTCAAGTGTACTTAGGTGGATATGACAAG 816
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TGTAGGAGGGAAGGTCATGCCAGAAAAGGACGTCAAGTGTACTTAGGTGGATATGACAAG 654
Query 817 GAAGATAGAGCAGCTAGAGCCTATGACTTGGCAGCTTTAAAATACTGGGGTTCTACTGCT 876
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 655 GAAGATAGAGCAGCTAGAGCCTATGACTTGGCAGCTTTAAAATACTGGGGTCCTACTGCT 714
Query 877 ACTACAAATTTTCCGGTCTCGAGTTATTCAAAAGAACTTGAGGAAATGAATCACATGACC 936
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 715 ACTACAAATTTTCCGGTCGCGAGTTATTCAAAAGAACTTGAGGAAATGAATCACATGACC 774
Query 937 AAGCAAGAGTTTATTGCATCTCTTAGGAGGAAAAGTAGCGGTTTTTCGAGAGGAGCTTCA 996
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AAGCTAGAGTTTATTGCATCTCTTAGGAGGAAAAGTAGCGGTTTTTCGAGAGGAGCTTCT 834
Query 997 ATATATAGAGGTGTCACAAGGCATCATCAACAAGGTCGCTGGCAAGCAAGAATCGGCCGT 1056
|| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 835 ATGTATAGAGGTGTGACAAGGCATCACCAACAAGGTCGTTGGCAAGCAAGAATCGGCCGT 894
Query 1057 GTCGCAGGAAACAAAGATCTTTACCTCGGAACCTTTGCAACCGAAGAGGAAGCAGCAGAG 1116
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 895 GTCGCAGGAAACAAAGATCTTTACCTCGGAACCTTTGCAACGGAAGAGGAAGCAGCAGAG 954
Query 1117 GCTTATGACATTGCAGCCATAAAGTTCAGAGGAATCAACGCAGTAACTAACTTTGAGATG 1176
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 955 GCTTATGACATTGCAGCCATAAAGTTCAGAGGAATCAACGCAGTAACTAACTTTGAAATG 1014
Query 1177 AACAGGTATGACATTGAAGCTGTCATGAATAGTTCTTTACCTGTAGGAGGAGCAGCTGCG 1236
||| |||||||| | |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1015 AACCGGTATGACGTGGAAGCTGTCATGAAAAGTTCTTTCCCTGTAGGAGGAGCAGCTGCG 1074
Query 1237 AAACGCCACAAACTCAAACTCGCTCTTGAATCTCCTTCTTCATCATCCTCTGACCATAAC 1296
||||||||||||||| || ||||||||||||||||||||||||||| |||||||||
Sbjct 1075 AAACGCCACAAACTC----TC--TCTTGAATCTCCTTCTTCATCATCCTCCGACCATAAC 1128
Query 1297 CTCCAACAACAACAGTTGCTTCCGTCCTCTTCTCCCTCGGATCAAAACCCTAACTCAATC 1356
||||||||||||| ||| |||||||||||||| |||||||||| |||||||||||||||
Sbjct 1129 ATCCAACAACAACATTTGGTTCCGTCCTCTTCTTCCTCGGATCACAACCCTAACTCAATC 1188
Query 1357 CCATGTGGCATTCCATTTGAGCCTTCAGTTCTCTATTACCACCAGAACTTCTTTCAGCAT 1416
|||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||
Sbjct 1189 CCATGTGGCATTCCATTTGAATCTTCAGTTCTCTATCACCACCAGAACTTCTTCCAGCAT 1248
Query 1417 TATCCTTTGGTCTCTGACTCTACAATTCAAGCTCCTATGAACCAAGCTGAGTTTTTCTTG 1476
||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1249 TATCCTTTGGTTTCTGACTCTACAGTTCAAGTTCCTATGAACCAAGCTGAGTTTTTCTTG 1308
Query 1477 TGGCCTAACCAGTCTTACT 1495
|||||||||||||||||||
Sbjct 1309 TGGCCTAACCAGTCTTACT 1327
> Ahg940520 jgi|Araly1|940520|scaffold_601064.1
Length=1772
Score = 108 bits (58), Expect = 1e-22
Identities = 112/136 (82%), Gaps = 11/136 (8%)
Strand=Plus/Plus
Query 8 CTCCAATGACGAATTGCTTAACGTTTTCTCTGTCACCAATGGAGATGTTGAAATCAACTG 67
|||| |||||||| || |||||||||||||||||||||||||||||||||| ||| |||
Sbjct 25 CTCCGATGACGAACTGGTTAACGTTTTCTCTGTCACCAATGGAGATGTTGAGGTCATCTG 84
Query 68 ATCAGTCTCACTT---CTC-T-T--C--TTCTTACGACGATTCTTC-TACTCCTTATCTC 117
|||||||||| || ||| | | | ||||| || || ||| || | |||||||||||
Sbjct 85 ATCAGTCTCAGTTTGTCTCCTATGACGCTTCTTCCGCCGCTTCCTCCT-CTCCTTATCTC 143
Query 118 ATCGATAACTTCTATG 133
||||||| |||||||
Sbjct 144 CTCGATAATTTCTATG 159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56030750395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5