BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G65510.1 Length=1497 Score E Sequences producing significant alignments: (Bits) Value Ahg918350 jgi|Araly1|918350|Al_scaffold_0008_3101 1914 0.0 Ahg940520 jgi|Araly1|940520|scaffold_601064.1 108 1e-22 > Ahg918350 jgi|Araly1|918350|Al_scaffold_0008_3101 Length=1329 Score = 1914 bits (1036), Expect = 0.0 Identities = 1243/1339 (93%), Gaps = 30/1339 (2%) Strand=Plus/Plus Query 175 ATGGCGGATTCAACAACCT-TATCTAC--TTTT---TTCG---AT-CATTCTCAGACTCA 224 |||||||||||||||| || |||| || |||| |||| || ||||||||| |||| Sbjct 1 ATGGCGGATTCAACAA-CTCTATCCACTTTTTTCGATTCGCAAATCCATTCTCAGGCTCA 59 Query 225 GATTCCAAAGCTGGAAGATTTCCTCGGTGATTCCTTTGTCCGTTACTCTGATAACCAAAC 284 |||||||||||| |||||||| |||||||||||||| || |||||||||||||||||||| Sbjct 60 GATTCCAAAGCTCGAAGATTTTCTCGGTGATTCCTTCGTTCGTTACTCTGATAACCAAAC 119 Query 285 AGAGACCCAAGACTCTTCTTCTCTCACTCCATTCTACGATCCACGTCACCGCACCGTTGC 344 |||||| |||||||||||||||||||||| ||||||||||| |||||||| ||||| ||| Sbjct 120 AGAGACACAAGACTCTTCTTCTCTCACTCGATTCTACGATCTACGTCACCACACCGATGC 179 Query 345 CGAAGGAGTTACAGGGTTCTTCTCTGATCATCATCAGC--CA-GATTTCAAGACGATAAA 401 || ||||||| ||| ||||||||| ||||||||||||| || ||||||||||||||||| Sbjct 180 CGGAGGAGTTTCAGAGTTCTTCTCCGATCATCATCAGCAGCACGATTTCAAGACGATAAA 239 Query 402 CTCGGGACCAGAAATCT-TCGATGACTCAACAACTTCCAACATCGGTGGTACTCATCTCT 460 ||||||| ||||||| | |||||||||| ||| ||||||||||||||||||||||||| | Sbjct 240 CTCGGGATCAGAAAT-TGTCGATGACTCCACAGCTTCCAACATCGGTGGTACTCATCTTT 298 Query 461 CCAGTCACGTGGTGGAGTCATCAACGACGGCGA-AGTTAGGGTTTAACGGTGATTGCACC 519 | ||||||||||||||||||||||||||||| | |||||||||||||||||| ||| | Sbjct 299 CTAGTCACGTGGTGGAGTCATCAACGACGGC-AGAGTTAGGGTTTAACGGTGGTTG---C 354 Query 520 ACCACCGGAGGAGTTTTGTCTCTAGGGGTTAACAACACATCAGATCAAC-CTT--TGAGC 576 ||||||||||||| ||||||||||||||||||||||||||||||||||| || | ||| Sbjct 355 ACCACCGGAGGAGCTTTGTCTCTAGGGGTTAACAACACATCAGATCAACATTTAATAAGC 414 Query 577 TGTAACAATGGCGAGAGAGGTGGAAACAGTAACAAGAAGAAAACAGTTTCTAAGAAGGAA 636 ||||| |||||||||||||||| |||||| ||||||||||| ||||| |||||||||||| Sbjct 415 TGTAATAATGGCGAGAGAGGTGAAAACAGCAACAAGAAGAAGACAGTGTCTAAGAAGGAA 474 Query 637 ACATCAGATGATTCAAAGAAGAAGATTGTCGAAACATTGGGACAAAGAACTTCAATTTAT 696 ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 475 ACATCGGATGATTCAAAGAAGAAGACTGTCGAAACATTGGGACAAAGAACTTCGGTTTAT 534 Query 697 CGTGGAGTCACCCGACATAGATGGACTGGAAGATACGAAGCGCATCTATGGGATAACAGC 756 |||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||| Sbjct 535 CGTGGAGTCACCCGACATAGGTGGACTGGAAGATATGAAGCACATCTATGGGACAACAGC 594 Query 757 TGTAGGAGGGAAGGTCAAGCCAGAAAAGGACGTCAAGTGTACTTAGGTGGATATGACAAG 816 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 595 TGTAGGAGGGAAGGTCATGCCAGAAAAGGACGTCAAGTGTACTTAGGTGGATATGACAAG 654 Query 817 GAAGATAGAGCAGCTAGAGCCTATGACTTGGCAGCTTTAAAATACTGGGGTTCTACTGCT 876 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 655 GAAGATAGAGCAGCTAGAGCCTATGACTTGGCAGCTTTAAAATACTGGGGTCCTACTGCT 714 Query 877 ACTACAAATTTTCCGGTCTCGAGTTATTCAAAAGAACTTGAGGAAATGAATCACATGACC 936 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 715 ACTACAAATTTTCCGGTCGCGAGTTATTCAAAAGAACTTGAGGAAATGAATCACATGACC 774 Query 937 AAGCAAGAGTTTATTGCATCTCTTAGGAGGAAAAGTAGCGGTTTTTCGAGAGGAGCTTCA 996 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 775 AAGCTAGAGTTTATTGCATCTCTTAGGAGGAAAAGTAGCGGTTTTTCGAGAGGAGCTTCT 834 Query 997 ATATATAGAGGTGTCACAAGGCATCATCAACAAGGTCGCTGGCAAGCAAGAATCGGCCGT 1056 || ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 835 ATGTATAGAGGTGTGACAAGGCATCACCAACAAGGTCGTTGGCAAGCAAGAATCGGCCGT 894 Query 1057 GTCGCAGGAAACAAAGATCTTTACCTCGGAACCTTTGCAACCGAAGAGGAAGCAGCAGAG 1116 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 895 GTCGCAGGAAACAAAGATCTTTACCTCGGAACCTTTGCAACGGAAGAGGAAGCAGCAGAG 954 Query 1117 GCTTATGACATTGCAGCCATAAAGTTCAGAGGAATCAACGCAGTAACTAACTTTGAGATG 1176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 955 GCTTATGACATTGCAGCCATAAAGTTCAGAGGAATCAACGCAGTAACTAACTTTGAAATG 1014 Query 1177 AACAGGTATGACATTGAAGCTGTCATGAATAGTTCTTTACCTGTAGGAGGAGCAGCTGCG 1236 ||| |||||||| | |||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1015 AACCGGTATGACGTGGAAGCTGTCATGAAAAGTTCTTTCCCTGTAGGAGGAGCAGCTGCG 1074 Query 1237 AAACGCCACAAACTCAAACTCGCTCTTGAATCTCCTTCTTCATCATCCTCTGACCATAAC 1296 ||||||||||||||| || ||||||||||||||||||||||||||| ||||||||| Sbjct 1075 AAACGCCACAAACTC----TC--TCTTGAATCTCCTTCTTCATCATCCTCCGACCATAAC 1128 Query 1297 CTCCAACAACAACAGTTGCTTCCGTCCTCTTCTCCCTCGGATCAAAACCCTAACTCAATC 1356 ||||||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||| Sbjct 1129 ATCCAACAACAACATTTGGTTCCGTCCTCTTCTTCCTCGGATCACAACCCTAACTCAATC 1188 Query 1357 CCATGTGGCATTCCATTTGAGCCTTCAGTTCTCTATTACCACCAGAACTTCTTTCAGCAT 1416 |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||| Sbjct 1189 CCATGTGGCATTCCATTTGAATCTTCAGTTCTCTATCACCACCAGAACTTCTTCCAGCAT 1248 Query 1417 TATCCTTTGGTCTCTGACTCTACAATTCAAGCTCCTATGAACCAAGCTGAGTTTTTCTTG 1476 ||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 1249 TATCCTTTGGTTTCTGACTCTACAGTTCAAGTTCCTATGAACCAAGCTGAGTTTTTCTTG 1308 Query 1477 TGGCCTAACCAGTCTTACT 1495 ||||||||||||||||||| Sbjct 1309 TGGCCTAACCAGTCTTACT 1327 > Ahg940520 jgi|Araly1|940520|scaffold_601064.1 Length=1772 Score = 108 bits (58), Expect = 1e-22 Identities = 112/136 (82%), Gaps = 11/136 (8%) Strand=Plus/Plus Query 8 CTCCAATGACGAATTGCTTAACGTTTTCTCTGTCACCAATGGAGATGTTGAAATCAACTG 67 |||| |||||||| || |||||||||||||||||||||||||||||||||| ||| ||| Sbjct 25 CTCCGATGACGAACTGGTTAACGTTTTCTCTGTCACCAATGGAGATGTTGAGGTCATCTG 84 Query 68 ATCAGTCTCACTT---CTC-T-T--C--TTCTTACGACGATTCTTC-TACTCCTTATCTC 117 |||||||||| || ||| | | | ||||| || || ||| || | ||||||||||| Sbjct 85 ATCAGTCTCAGTTTGTCTCCTATGACGCTTCTTCCGCCGCTTCCTCCT-CTCCTTATCTC 143 Query 118 ATCGATAACTTCTATG 133 ||||||| ||||||| Sbjct 144 CTCGATAATTTCTATG 159 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56030750395 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5