BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65520.1
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496786 jgi|Araly1|496786|fgenesh2_kg.8__2602__AT5G65520.1 1099 0.0
> Ahg496786 jgi|Araly1|496786|fgenesh2_kg.8__2602__AT5G65520.1
Length=703
Score = 1099 bits (595), Expect = 0.0
Identities = 668/704 (95%), Gaps = 2/704 (0%)
Strand=Plus/Plus
Query 44 GTGACTGGTTTAGTCTTCTGAGATTCAGAGAGAGCaaaaaaaGGAAGAAGAC-ATGGCTA 102
|||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 1 GTGACTGGTTTAGTCTTCTGAGATTCAGAGAGAGCAAAAAAA-AAAAAAGACAATGGCTA 59
Query 103 CAACAGAAACAATCATACAAGGAGCAATTCTGGTGTTAACCTTGGTTATGTTCTGGGCGA 162
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 60 CAACAGAAACAATCATACAAGGAGCAATTTTGGTGCTAACCTTGGTTATGTTCTGGGCGA 119
Query 163 TTAAGTATCTCTCTCAACGAGGCCTAACCAAATTCCGAACCAAACACCGAGCCACACTCC 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTAAGTATCTCTCTCAACGAGGCCTAACCAAATTCCGAACCAAACACCGAGCCACACTCC 179
Query 223 AAACCCAGCGTCAGCTAATCCAAGCCTCACGTCTCCTAGCTCGAGCCCGAACCACACCCA 282
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 180 AAACCCAGCGTCAGCTAATCCAAGCCTCTCGTCTCCTAGCTCGAGCCCGAACCACACCCA 239
Query 283 AGAAATCTCAATCTCAATCTCTCGCCAAAACGGCGCTCACCGAAGCTGATAATGTGATCG 342
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGAAATCCCAATCTCAATCTCTCGCCAAAACGGCGCTCACCGAAGCTGATAATGTGATCT 299
Query 343 CGATTTCTCCAGATGATGCCGCCGGTCACATCGTCCGTGCCCTAGCTCTAGATCTGCTCG 402
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CGATTTCACCAGATGATGCCGCCGGTCACATCGTCCGTGCCCTAGCTCTAGATCTGCTCG 359
Query 403 GTCACCATACTTCTGCTCTCAAATCGTTCGATATGGCGCTGACTTATCCGCGTTTGAAGT 462
||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 360 GTCACCACACTTCTGCTCTCAAGTCATTCGATATGGCGCTGACTTATCCGCGTTTGAAGT 419
Query 463 CGCTTTCGGTTGGAGAACGAGCCGATGCGCTTGTGAAGAGAGCTGAGATGAAGCTGGCTG 522
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 420 CGCTTTCGGTTGGAGAACGTGCCGATGCGCTTGTGAAGAGAGCTGAGATGAAACTGGCTG 479
Query 523 TGAATCGGCGACGGAGGATTGATTCGGCGGTCGAGGATCTGGAAGAGGCGGTGAGGCTCG 582
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 480 TGAATCGGCGACGGAGGATTGATTCGGCAATCGAAGATCTGGAAGAGGCGGTGAGGCTCC 539
Query 583 CCGCCGGTACAGATACGGCGAGATTGTTCCGGCTGTTGGGAGAGTGTTATGAGTTCAAGG 642
||||||||||||||||||||||||| ||||| || || || |||||||||||||||||||
Sbjct 540 CCGCCGGTACAGATACGGCGAGATTATTCCGTCTATTAGGCGAGTGTTATGAGTTCAAGG 599
Query 643 GCTTGAAAGAGAAAGCCCAGTGGGCCTTTAATGAAGCTTTAAAAGCTCAACCTAGTTCCG 702
||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| ||||| |
Sbjct 600 GCTTGAATGAGAAAGCCCAATGGGCTTTTAATGAAGCTTTAAAAGCCCAACCGAGTTCGG 659
Query 703 TAAACGGCACGTGATGAATGAGATGGACCGGACTAGGTCGTGGC 746
|||||| ||||||||||||||| || ||||||||| ||||||
Sbjct 660 CAAACGGGTCGTGATGAATGAGATAGAGCGGACTAGGCCGTGGC 703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099496114
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5