BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65530.1
Length=1903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496787 jgi|Araly1|496787|fgenesh2_kg.8__2603__AT5G65530.1 2586 0.0
Ahg487885 jgi|Araly1|487885|fgenesh2_kg.6__1019__AT5G10520.1 931 0.0
> Ahg496787 jgi|Araly1|496787|fgenesh2_kg.8__2603__AT5G65530.1
Length=1795
Score = 2586 bits (1400), Expect = 0.0
Identities = 1659/1777 (93%), Gaps = 45/1777 (3%)
Strand=Plus/Plus
Query 84 acacaaaaacacaaaacTTCTGTTTCCCTGTTTCTCCGGATTCTCTCCGGCTCT--GAGC 141
|||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||
Sbjct 47 ACACAAAAACACAAAACTTCTGTTCCCCTGTTTCTACGGATTCTCTCCGGCTCTGAGAGC 106
Query 142 TTTCGGC-TTCTCCTCTCCGGAGATGTTACTCTGCTTCCCTCTTTTGTGTTCTTTTTGTT 200
|||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 TTTC-GCTTTCTCCTCT-CGGAGATGTTACTCTGCTTCCCTCTTTTGTGTTCTTTTTGTT 164
Query 201 TTCTGGGTGAATAT-TGTATGAACCTTTGACTGGGAT-TTTTCCGAAGAAGAATCCCAGA 258
||||||||||| || |||||||| |||||||| || ||| |||||||| ||||||||
Sbjct 165 TTCTGGGTGAA-ATCTGTATGAAGCTTTGACT--TATATTTAGCGAAGAAGCATCCCAGA 221
Query 259 CG-ACGT-AATTTTTCTCCAAGCTATGGCTGTTGAAGAGATGGAGAAGAAGATCAAAGGA 316
| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 222 -GTACGTAAATTTTTCTCAAAGCTATGGCTGTTGAAGAGATGGAGAAGAAGATCAAAGGA 280
Query 317 AGCCAAGAGACGGAGCTACATAAAAACGACTTATCAATCGAAGACCCATCTCCAAGATGC 376
||||| || |||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 281 AGCCATGATACGGAGCTACATAACAACGACTTATCCATCGAAGATCCATCTCCAAGATGC 340
Query 377 GTGCTTGAAATTCCGGTAATGAGTTCAGATTCCGAT---A--A-CAGCAGC---AGTTGT 427
||||||||||| |||| ||||||||| ||||||||| | | ||||||| ||||||
Sbjct 341 GTGCTTGAAATCCCGGCAATGAGTTCCGATTCCGATAACAGCAGCAGCAGCAGTAGTTGT 400
Query 428 AGCTCGTGTTCTCCTGATAAATCATCGTCGCCATTATCAACAACTCCTCCAAACGTTTCG 487
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 401 AGCTCGTGTTCTCCTGATAAATCATCGTCGCCATTATCAACAACTCCTACAAACGTTTCG 460
Query 488 TCTTTTCATCAATGGAACAAGATGATCGAATCCATCAAGAAGAAATCAATTAGGAGATTC 547
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 461 TCTTTTCATCAATGGAACAAGATGATCGAATCTATCAAGAAGAAATCAATTAGGAGATTC 520
Query 548 TCTGTCATTCCTCTCCTCGCTAGCTACGAGCTCACCCGCAAAAAGAAACAACCGAAACTA 607
|||||||||||||||||||||||||||||||||||||| ||||| | | | |||||||
Sbjct 521 TCTGTCATTCCTCTCCTCGCTAGCTACGAGCTCACCCGTAAAAACATGCGGCGGAAACTA 580
Query 608 TCTCCTTGTTCAGAAAACGACTTCGATTGTGATCAAATCCTCGTCGCTAAACCTTCGTGG 667
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 581 TCTCCGTGTTCAGAAAACGAATTCGATTGTGACCAAATCCTCGTCGCTAAACCTTCGTGG 640
Query 668 CGTAATTTCACCTTCGACGAACTCGTTGCCGCCACCGACAATTTTAATCCCGAGAACATG 727
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 641 CGCAATTTCACCTTCGACGAGCTCGTTGCCGCCACCGACAATTTTAATCCCGAGAACATG 700
Query 728 ATTGGGAAAGGAGGACATGCGGAGGTGTACAAAGGGGTTTTACCGGACGGAGAGACTGTG 787
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 701 ATTGGGAAAGGAGGGCATGCGGAGGTGTACAAAGGTGTTTTACCGGACGGAGAGACTGTG 760
Query 788 GCGATCAAGAAGCTGACGAGACATGCAAAGGAAGTAGAAGAACGAGTCAGTGATTTCTTA 847
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 761 GCGATCAAGAAGCTGACGAGACACGCAAAGGAAGTAGAAGAAAGAGTCAGTGATTTCTTA 820
Query 848 TCGGAGCTTGGGATAATCGCACATGTTAACCATCCAAACGCAGCTAGGCTTCGTGGTTTC 907
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 821 TCGGAGCTTGGAATAATCGCACACGTTAACCATCCAAACGCAGCTAGGCTTCGTGGTTTC 880
Query 908 AGTTGTGATCGCGGTTTGCATTTTGTGCTTGAGTACTCTTCTCATGGCAGTCTTGCTTCT 967
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 881 AGTTGTGATCGCGGTTTGCATTTTGTGCTTGAGTACTCTCCTCATGGCAGTCTCGCTTCT 940
Query 968 CTACTCTTTGGATCAGAGGAGTGTTTGGATTGGAAGAAACGGTATAAAGTGGCTATGGGT 1027
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 941 CTACTCTTTGGATCTGAGGAGTGTTTGGATTGGAAGAAACGGTATAAAGTGGCTTTGGGT 1000
Query 1028 ATAGCTGATGGTTTGAGTTATCTTCATAACGATTGCCCTCGACGGATTATTCACCGAGAC 1087
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1001 ATAGCTGATGGTTTGAGTTATCTTCATAATGATTGCCCTCGACGGATTATTCACCGAGAC 1060
Query 1088 ATCAAAGCTTCCAACATTTTGCTCTCTCAAGACTACGAAGCTCAGATTTCGGATTTTGGA 1147
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1061 ATCAAAGCTTCCAACATTTTGCTCAGTCAAGATTACGAAGCTCAGATTTCGGATTTTGGA 1120
Query 1148 CTAGCTAAGTGGCTCCCAGAGCATTGGCCTCATCACATTGTTTTCCCTATCGAAGGCACA 1207
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1121 CTAGCTAAGTGGCTACCAGAGAATTGGCCTCATCACATTGTTTTCCCTATCGAAGGCACA 1180
Query 1208 TTCGGATATCTAGCTCCAGAGTACTTCATGCACGGGATTGTCGATGAGAAGACGGATGTT 1267
|||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||
Sbjct 1181 TTCGGATATCTAGCTCCAGAGTACTTTATGCATGGGATTGTAGACGAGAAGACGGATGTG 1240
Query 1268 TTTGCTTTTGGTGTATTGCTTCTAGAGATCATAACTGGTCGTCGAGCTGTTGATACCGAT 1327
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1241 TTTGCATTTGGTGTATTGCTTCTAGAGATCATAACTGGTCGTCGAGCTGTTGATACCGCT 1300
Query 1328 AGCCGGCAAAGCATAGTTATGTGGGCAAAACCTCTTCTGGAGAAGAACAACATGGAAGAA 1387
|||||||||||||||||||||||||||||||||||| ||||||| |||| | ||||||||
Sbjct 1301 AGCCGGCAAAGCATAGTTATGTGGGCAAAACCTCTTTTGGAGAAAAACAGCGTGGAAGAA 1360
Query 1388 ATAGTTGATCCTCAGCTAGGCAATGACTTTGATGAAACCGAGATGAAACGAGTGATGCAA 1447
|||||||||||||| ||||| |||||||||||||| | ||||||||||||||||||||||
Sbjct 1361 ATAGTTGATCCTCAACTAGGAAATGACTTTGATGAGATCGAGATGAAACGAGTGATGCAA 1420
Query 1448 ACAGCTTCAATGTGCATACACCATGTATCCACTATGCGTCCTGACATGAACCGGTTGGTT 1507
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1421 ACAGCTTCAATGTGCATACACCATGTATCCACTATGCGCCCTGATATGAACCGGTTGGTT 1480
Query 1508 CAGCTGTTGCGCGGAGATGACCAGTTAGCTGAACAAAAACCAGGTGGAGCAAGAACAGTG 1567
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1481 CAGCTGTTGCGCGGAGATGACCAGTTAGCAGAACAAAAACCAGGTGGAGCAAGAACAGTG 1540
Query 1568 AGTCTCGACGATTGCGACTTAGATCACACCTCTTCCTCTTACCTTAACGATCTCACTCGA 1627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 AGTCTCGACGATTGCGACTTAGATCACACCTCTTCCTCTTACCTTAACGATCTCACTCGA 1600
Query 1628 CATAGACAGCTCTTAATGGAGTAAGCAATCTGATGATACCAATACTTTaaaaaaaaCTCC 1687
|||||||| ||||||||||||| |||||||||||||| ||| | | ||||
Sbjct 1601 CATAGACAACTCTTAATGGAGTGAGCAATCTGATGATTCCA-T-C-----------CTCC 1647
Query 1688 TCTCACAGAGAAGAAGAAACAACAAGAAGCAAAAATGTTCTTCTTTCCCTTTTTCTTGTC 1747
| ||||||||||| | |||||||||||||||||||| |||||| |||||||||||||
Sbjct 1648 -C--ACAGAGAAGAA-A--CAACAAGAAGCAAAAATGTTTTTCTTTTCCTTTTTCTTGTC 1701
Query 1748 TGTGATTTTGCTTCGTCT-TCTCCATTGTAAAAATCTTAAAAAGAGGGAATATGTTGTAT 1806
|||||||||||||| | | ||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1702 TGTGATTTTGCTTCTTTTGTCTCCATTGTAAAAATCTTCAAAAGAGGGAAAATGTTGTAT 1761
Query 1807 GTATTAATTTGGCTTTTGTCTTCAAATTCTGGTTGTC 1843
|||| |||||||||| ||||||||||||||||||||
Sbjct 1762 GTAT-AATTTGGCTT--GTCTTCAAATTCTGGTTGTC 1795
> Ahg487885 jgi|Araly1|487885|fgenesh2_kg.6__1019__AT5G10520.1
Length=1858
Score = 931 bits (504), Expect = 0.0
Identities = 1145/1441 (79%), Gaps = 97/1441 (7%)
Strand=Plus/Plus
Query 277 AGCTATGGCTGTTGAAGAGATGGAGAA-GAAG--ATCAAAGGAAGC--CAAGAGACGGAG 331
|||||||||||||||||||| |||| ||| | |||| | | | ||||||| |||
Sbjct 239 AGCTATGGCTGTTGAAGAGAACAAGAACAAAGAAAGCAAA-G-ATCATCAAGAGATAGAG 296
Query 332 CTACATAAAAACGACTTA-TCAATCGAAGA--C-CCATCTCCAAGATGCGTGCTTGAAAT 387
|| |||| ||||||||| | ||||||| | |||| |||||| | ||| || |
Sbjct 297 CTTCATAGGAACGACTTAGGC-CTCGAAGATTCATCATCGCCAAGA-G-GTG-TT---CT 349
Query 388 TCCGGTAATGAG-TTCAGATTCCGATAACAGCAGC---AGTTGTAGCTCGTGTT-CTC-- 440
| || |||| | ||||||||| || ||||||||| ||||| ||||| |||| |||
Sbjct 350 T--GG-AATG-GTTTCAGATTCTGACAACAGCAGCAGTAGTTGCAGCTCTTGTTCCTCTG 405
Query 441 CTGAT--A--A--AT---CATCGTCGCCATTATCAACA-ACTCCTCCAAACGTTTCGTCT 490
|||| | | || ||||||| ||||| |||| | ||| || |||||||||||||
Sbjct 406 ATGATAAATCATCATCAACATCGTCACCATTTTCAA-ATACTACTAAAAACGTTTCGTCT 464
Query 491 T-TT--CA------TCAATGGAACAAGATGATCGAATCCATCAAGAAGAAATCAATTAGG 541
| || || |||||||||||| ||||| ||||| ||||||||||| || || | |
Sbjct 465 TCTTCCCATGGTCTTCAATGGAACAAAATGATTGAATCTATCAAGAAGAAGTCCATGA-G 523
Query 542 A-GATTCTCTGTCATTCCTCTCCTCGCTAGCTACGAGCTCACCCGCAAAAA--------G 592
| ||||||||||||||||||| || || || || || |||||||| ||||| |
Sbjct 524 ACGATTCTCTGTCATTCCTCTTCTTGCAAGTTATGAACTCACCCGTAAAAACTTGCGTCG 583
Query 593 -AAACAACCGAAACTATCTCCTTGTTCAGAAAACGACTTCGA-TTGTG-ATCAAATCCTC 649
|| ||||| || || ||||| || || || | ||| | |||| | | || |
Sbjct 584 TAAGCAACCTAAGCTCTCTCC---CTCTGAGAAGGCCTT-TACCTGTGAAGC-CTTCTTT 638
Query 650 GTCGCTAAACCTTCGTGGCGTAATTTCACCTT-CGACGAACTCGTTGCCGCCACCGACAA 708
| |||||||| || ||| | || |||| ||| ||| || |||| || |||||||| |
Sbjct 639 ATGGCTAAACCCTCTTGGAGAAACTTCA-CTTACGAAGAGCTCGCTGTAGCCACCGATTA 697
Query 709 TTTTAATCCCGAGAACATGATTGGGAAAGGAGGACATGCGGAGGTGTACAAAGGGGTTTT 768
||| ||||| ||||| ||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 698 TTTCAATCCTGAGAATATGATTGGGAAGGGAGGTCATGCGGAGGTATACAAAGGGGTTTT 757
Query 769 ACCGGACGGAGAGACTGTGGCGATCAAGAAGCTGACGAGACATGCAAAGGAAGTAGAAGA 828
| | || ||||| || || || |||||||||| ||| || || ||||||| ||||||
Sbjct 758 GCTTAATGGTGAGACGGTAGCTATTAAGAAGCTGATGAGTCACGCCAAGGAAGAAGAAGA 817
Query 829 ACGAGTCAGTGATTT-CTTATCGGAGCTTGGGATAATCGCACATGTTAACCATCCAAACG 887
| |||| || ||||| ||| || |||||||| |||||||||||||| ||||| |||||||
Sbjct 818 AAGAGTGAGCGATTTCCTT-TCAGAGCTTGGTATAATCGCACATGTAAACCACCCAAACG 876
Query 888 CAGCTAGGCTTCGTGGTTTCAGTTGTGATCGCGGTTTGCATTTTGTGCTTGAGTACTCTT 947
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 877 CAGCTAGGCTTCGTGGTTTCAGCAGTGATCGCGGTTTGCATTTTGTGCTTGAGTACTC-T 935
Query 948 CTC-ATGGCAGTCTTGCTTCTCTACTCTTTGGATCAGAGGAGTGTTTGGATTGGAAGA-A 1005
| | ||||||| ||||||||| | ||||||||||||||||| ||| | || ||||||| |
Sbjct 936 CCCTATGGCAGCCTTGCTTCTATGCTCTTTGGATCAGAGGAATGTCTAGAGTGGAAGATA 995
Query 1006 ACGGTATAAAGTGGCTATGGGTATAGCTGATGGTTTGAGTTATCTTCATAACGATTGCCC 1065
| |||||||||||||| | ||||||||||||||| ||||||||||||| || | ||||||
Sbjct 996 A-GGTATAAAGTGGCTCTAGGTATAGCTGATGGTCTGAGTTATCTTCACAATGCTTGCCC 1054
Query 1066 TCGACGGATTATTCACCGAGACATCAAAGCTTCCAACATTTTGCTC-TCTCAAGACTACG 1124
||||||| |||||||| |||||||||||||| ||||| |||||| | | || ||||
Sbjct 1055 AAGACGGATCATTCACCGTGACATCAAAGCTTCTAACATATTGCTCAAC-CGCGATTACG 1113
Query 1125 AAGCTCAGATTTCGGATTTTGGACTAGCTAAGTGGCTCCCAGAGCATTGGCCTCATCACA 1184
||||||||||||| ||||| ||||| || || |||||||||||| | |||||||||||
Sbjct 1114 AAGCTCAGATTTCAGATTTCGGACTTGCAAAATGGCTCCCAGAGAACTGGCCTCATCATG 1173
Query 1185 TTGTTTTCCCTATCGAAGGCACATTCGGATATCTAGCTCCAGAGTACTTCATGCACGGGA 1244
|||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1174 TTGTATTCCCCATTGAAGGAACATTCGGATATCTAGCTCCAGAGTACTTCATGCACGGCA 1233
Query 1245 TTGTCGATGAGAAGACGGATGTTTTTGCTTTTGGTGTATTGCTTCTAGAGATCATAACTG 1304
|||| |||||||||| ||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1234 TTGTTGATGAGAAGATTGATGTGTTTGCCTTTGGAGTATTGCTTCTAGAGATCATAACCA 1293
Query 1305 GTCGTCGAGCTGTTGATACCG-ATAGCCGGCAAAGCATAGTTATGTGGGCAAAACCTCTT 1363
|||| |||||||||||||| | | ||| |||| ||||| ||| |||||||||||| ||
Sbjct 1294 GTCGCCGAGCTGTTGATACTGCA-AGCAGGCAGAGCATTGTTGCATGGGCAAAACCTTTT 1352
Query 1364 CTGGAGAAGAACAACATGGAAGAAATAGTTGATCCTCAGCTAGGCAATGACTTTGATGAA 1423
|| |||||||| | |||||| || || || ||||||| |||||| ||| | ||| || |
Sbjct 1353 CTTGAGAAGAATAGCATGGAGGACATTGTGGATCCTCGGCTAGGAAATAAGTTTAATCCA 1412
Query 1424 ACCGAGATGAAACGAGTGATGCAAACAGCTTCAATGTGCATACACCATGTATCCACTATG 1483
|| |||||| |||| ||||||| ||||||||||||||| ||||| ||| || || | |||
Sbjct 1413 ACAGAGATGCAACGGGTGATGCTAACAGCTTCAATGTGTATACATCATATAGCCGCAATG 1472
Query 1484 CGTCCTGACATGAACCGGTTGGTTCAGCTGTTGCGCGGAGATGAC---C-AGTT-AGCTG 1538
|| |||||||||| ||||||||| ||||||||||| ||||| ||| | || | |||||
Sbjct 1473 CGACCTGACATGACCCGGTTGGTGCAGCTGTTGCGTGGAGAAGACGGGCCAGCTGAGCTG 1532
Query 1539 AA-CAAAA-ACCAGGTGGAGCAAGAACAG-TGAGTCTCGACG-ATTGCGA-CTT-A-GAT 1591
| || || || ||| ||| |||| || ||||| | ||| || |||| || | |||
Sbjct 1533 CAGCAGAAGAC-AGG-GGA--AAGAG-AGGTGAGTGTAAACGCAT-GCGATCTACAAGAT 1586
Query 1592 CACACCTCTTCCTCTTACCTTAACGATCTCACTCGACATAGACAGCTCTTAATGGAGTAA 1651
|||||||||||||| ||||| ||||| |||| ||| ||||| || ||||| |||||||||
Sbjct 1587 CACACCTCTTCCTCGTACCTCAACGAACTCAGTCGCCATAGGCAACTCTTGATGGAGTAA 1646
Query 1652 G 1652
|
Sbjct 1647 G 1647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71495389865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5