BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65550.1
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358754 jgi|Araly1|358754|fgenesh1_pg.C_scaffold_8002541 957 0.0
Ahg358770 jgi|Araly1|358770|fgenesh1_pg.C_scaffold_8002557 104 2e-21
> Ahg358754 jgi|Araly1|358754|fgenesh1_pg.C_scaffold_8002541
Length=855
Score = 957 bits (518), Expect = 0.0
Identities = 570/596 (96%), Gaps = 0/596 (0%)
Strand=Plus/Plus
Query 18 ATGGCCGAGCCAAAACCGAAGCTTCATGTTGCAGTGTTCCCATGGTTAGCTTTAGGTCAC 77
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCGAGCCAAATCTGAAGCTTCATGTTGCAGTGTTCCCATGGTTAGCTTTAGGTCAC 60
Query 78 ATGATTCCTTACTTGCAACTCTCAAAGCTCATAGCAAGGAAAGGCCATACTGTGTCCTTC 137
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 61 ATGATTCCTTACTTGCAACTCTCAAAGCTCATAGCAAGGAAAGGCCATACCGTCTCCTTC 120
Query 138 ATCTCCACAGCTCGTAACATTTCACGTCTTCCCAATATATCCTCCGACCTTTCCGTGAAT 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCTCCACAGCTCGTAACATTTCACGTCTTCCCAATATATCCTCCGACCTTTCCGTGAAT 180
Query 198 TTCGTTTCTTTGCCGTTAAGTCAAACCGTCGACCATCTCCCAGAGAACGCTGAGGCCACC 257
||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 181 TTCGTGTCTTTGCCTTTAAGTCACACCGTCGACCACCTCCCAGAGAACGCTGAGGCCACC 240
Query 258 ACTGATGTCCCGGAGACTCACATAGCTTATCTGAAGAAAGCATTTGATGGGCTTTCTGAA 317
||||||||||||| ||| |||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 241 ACTGATGTCCCGGGGACACACATAGCCTATCTCAAGAAAGCGTTTGATGGGCTTTCTGAA 300
Query 318 GCTTTCACAGAGTTTTTAGAAGCTTCCAAACCAAACTGGATAGTGTATGATATCTTGCAC 377
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTTTCTCAGAGTTTTTAGAAGCTTCCAAACCAAACTGGATAGTGTATGATATCTTGCAC 360
Query 378 CATTGGGTCCCGCCTATCGCTGAGAAGCTCGGCGTGAGACGAGCCATCTTCTGCACGTTC 437
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CATTGGGTCCCACCTATCGCTGAGAAGCTCGGCGTGAGACGAGCCATCTTCTGCACGTTC 420
Query 438 AACGCAGCTTCCATCATCATCATCGGTGGGCCAGCATCAGTCATGATTCAAGGTCATGAC 497
||||||||||||||| |||||||| |||||||||||||||||||| |||| |||||||||
Sbjct 421 AACGCAGCTTCCATCGTCATCATCAGTGGGCCAGCATCAGTCATGGTTCATGGTCATGAC 480
Query 498 CCTCGAAAGACTGCTGAAGATCTTATCGTGCCTCCACCATGGGTCCCGTTTGAGACCAAC 557
||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 481 CCTCGAAAGACCGCTGAAGATCTTACCGTGACTCCACCATGGGTCCCGTTTGAGACCAAC 540
Query 558 ATAGTTTACCGTCTCTTTGAAGCTAAGAGGATCATGGAGTATCCCACGGCAGGTGT 613
|||||||||||||||||||| |||| ||||||| |||||||||||||||||| |||
Sbjct 541 ATAGTTTACCGTCTCTTTGAGGCTAGGAGGATCGTGGAGTATCCCACGGCAGCTGT 596
Score = 154 bits (83), Expect = 2e-36
Identities = 181/222 (82%), Gaps = 31/222 (14%)
Strand=Plus/Plus
Query 1207 GCTTGGAGATTCCAAGGAATGAGCGAGACGGGCTGTTCACGAGTGCTTCTGTTGCAGAGA 1266
||||||| ||| |||||||||||||||||||| |||||| ||||||||||| | | |
Sbjct 665 GCTTGGAAATTTCAAGGAATGAGCGAGACGGGTTGTTCATGAGTGCTTCTG-T---G-G- 718
Query 1267 CAATCAGACATGTTGTTGTGGAAGAAGAAGGAAAGATCTACAGGAACAATGCTGCATCTC 1326
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 719 ----CAGACAGGTTGTTGTGGAAGAAGAAGGAAAGATCTACAGAAACAATGCTGCATCT- 773
Query 1327 AGCAAAAGAAAATATTCGGGAACAAGAGATTGCAAGATCAGTATGCGGATGGTTTTATCG 1386
| | | |||||||||||||||||| |||||||||||||||||||
Sbjct 774 --C----------A-----G--CAAGAGATTGCAAGATCATTATGCGGATGGTTTTATCG 814
Query 1387 AGTTTCTGGAGAATCCTATAGCAGGAGTGTAGAGCAAAATAA 1428
|||||||||||||||||| ||| |||||||| |||||| |||
Sbjct 815 AGTTTCTGGAGAATCCTAGAGCTGGAGTGTATAGCAAA-TAA 855
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1108 CAGCTGTGGAAGGGCTTAGCTTTGGTGT 1135
||||||||||||||||||||||||||||
Sbjct 590 CAGCTGTGGAAGGGCTTAGCTTTGGTGT 617
> Ahg358770 jgi|Araly1|358770|fgenesh1_pg.C_scaffold_8002557
Length=1278
Score = 104 bits (56), Expect = 2e-21
Identities = 60/62 (97%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 9 AGAGAGACCATGGCCGAGCCAAAACCGAAGCTTCATGTTGCAGTGTTCCCATGGTTAGCT 68
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 671 AGACAGACCATGGCCGAGCCAAAACCGAAGCTTCATGTTGCAGTGTTCTCATGGTTAGCT 730
Query 69 TT 70
||
Sbjct 731 TT 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57059187010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5