BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G65570.1 Length=2217 Score E Sequences producing significant alignments: (Bits) Value Ahg496790 jgi|Araly1|496790|fgenesh2_kg.8__2606__AT5G65570.1 3430 0.0 Ahg951424 jgi|Araly1|951424|scaffold_803311.1 551 8e-156 > Ahg496790 jgi|Araly1|496790|fgenesh2_kg.8__2606__AT5G65570.1 Length=2163 Score = 3430 bits (1857), Expect = 0.0 Identities = 2066/2168 (95%), Gaps = 10/2168 (0%) Strand=Plus/Plus Query 55 ATGAGAAGAGATTATAACGGCGGATTGATCGCCTTTTCGAGATATTTCAGCTTCTTTTCT 114 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 1 ATGAGAAGAGATTATAACGGCGGATTGATCGCCTTTTCGAGATATCTCAGCTTCTTTGCA 60 Query 115 AGCAGAACATGTTCACCGGAATC-ATCTATCAATAACCAGTTTAGGCTTCTCTGCATCAC 173 | || ||| |||||||||||| | ||||||||||| ||||||||||||||||||| |||| Sbjct 61 ACCAAAACTTGTTCACCGGAA-CTATCTATCAATAGCCAGTTTAGGCTTCTCTGCGTCAC 119 Query 174 TTGTGA-TACCCTGACAACGACGCACAATTTCTCTCAGCTTCTCAGACAATGCATCGACG 232 |||||| | || ||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct 120 TTGTGACT-CCTTGACAACGACGCACACTTTCTCTCAGCTTCTCAGACAATGCATAGACG 178 Query 233 AAAGATCGATATCAGGAATCAAGACTATCCAAGCCCATATGCTGAAATCTGGTTTTCCGG 292 ||| |||||||||||||||||||| |||||||||||| ||||| ||||| |||||||| | Sbjct 179 AAAAATCGATATCAGGAATCAAGAATATCCAAGCCCAGATGCTCAAATCAGGTTTTCCAG 238 Query 293 CCGAAATTTCCGGCAGCAAACTCGTCGACGCGAGTTT-AAAGTGTGGCGATATCGATTAC 351 |||| |||||||||| |||||||||||||||||||| ||| |||||||| |||| |||| Sbjct 239 TCGAACTTTCCGGCAGTAAACTCGTCGACGCGAGTTTGAAA-TGTGGCGAGATCGGTTAC 297 Query 352 GCACGACAGGTGTTCGATGGAATGTCTGAGAGACATATTGTAACATGGAACTCT-TTAAT 410 ||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| || || Sbjct 298 GCACGCCAGCTGTTCGATGGAATGCCTGAGAGACATATTGTAACATGGAACTCTATT-AT 356 Query 411 TGCTTATTTAATTAAGCACAGAAGAAGCAAGGAAGCTGTTGAGATGTATAGATTGATGAT 470 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 TGCTTATTTCATTAAGCACAGAAGAAGCAAGGAAGCTGTTGAGATGTATAGATTGATGAT 416 Query 471 -TACGAATAATGTTTTGCCAGATGAGTACACGTTGTCTAGTGTTTTCAAGGCGTTTTCAG 529 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 CT-CGAATAATGTTTTGCCAGATGAGTACACGTTGTCTAGTGTTTTCAAGGCGTTTTCAG 475 Query 530 ATTTGAGTCTTGAGAAGGAAGCACAGAGAAGCCACGGACTTGCTGTGATTTTGGGTTTGG 589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476 ATTTGAGTCTTGAGAAGGAAGCACAGAGAAGCCACGGACTTGCTGTGATTTTGGGTTTGG 535 Query 590 AAGTCTCAAACGTGTTCGTTGGAAGTGCTCTTGTGGATATGTATGTAAAGTTTGGTAAAA 649 ||||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||| Sbjct 536 AAGTCTCGAACGTGTTTGTGGGAAGTGCCCTTGTGGATATGTATGTAAAGTTTGGTAAAA 595 Query 650 CGAGGGAGGCGAAGTTAGTATTGGACCGCGTGGAGGAGAAAGATGTAGTTTTGATCACAG 709 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 596 CGAGGGAGGCAAAGTTAGTTTTGGACCGCGTGGAGGAGAAAGATGTAGTTTTGATCACAG 655 Query 710 CTTTGATCGTTGGTTACTCGCAGAAGGGTGAAGATACTGAAGCTGTGAAGGCATTTCAAA 769 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 CTTTGATTGTTGGTTACTCGCAGAAGGGTGAAGATACTGAAGCTGTGAAGGCATTTCAAA 715 Query 770 GTATGTTGGTGGAGAAAGTTCAGCCTAATGAGTATACTTACGCTAGTGTATTGATTTCTT 829 |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 716 GTATGTTGGTTGAGAAAGTTCAGCCTAACGAGTATACTTACGCTAGTGTATTGATATCTT 775 Query 830 GTGGAAACTTAAAGGATATAGGTAATGGCAAGTTGATTCATGGACTTATGGTCAAGTCCG 889 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 776 GTGGAAACTTAAAGGATATAGGTAATGGCAAGTTGATTCATGGACTTATGGTCAAATCCG 835 Query 890 GTTTTGAGTCTGCGCTTGCTTCACAAACTTCTCTTCTTACCATGTATTTGAGGTGCAGTT 949 ||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||| | Sbjct 836 GTTTTGAGTCTGCTCTTGCTTCGCAAACTTCTCTTCTTACAATGTACTTGAGGTGCAGCT 895 Query 950 TGGTCGATGATTCCTTGCGGGTTTTCAAGTGTATTGAGTACCCAAATCAGGTGAGTTGGA 1009 | |||||||||||| | | |||||| ||||||||| |||||||||||||||| | ||||| Sbjct 896 TAGTCGATGATTCCCTACTGGTTTTTAAGTGTATTAAGTACCCAAATCAGGTAACTTGGA 955 Query 1010 CGTCTCTTATATCAGGGCTTGTCCAAAATGGTAGAGAAGAGATGGCTCTAATCGAATTTA 1069 ||||||| |||||||||||||| ||||| ||||||||||||| ||||||||||||||||| Sbjct 956 CGTCTCTCATATCAGGGCTTGTACAAAACGGTAGAGAAGAGACGGCTCTAATCGAATTTA 1015 Query 1070 GAAAAATGATGCGTGATTCAATCAAGCCTAACTCTTTTACATTGTCAAGTGCTCTCAGGG 1129 ||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 1016 GAAAAATGATGCGAGATTCAGTCAAGCCCAACTCTTTTACATTGTCAAGTGCTCTCAGGG 1075 Query 1130 GGTGCTCGAATCTCGCAATGTTTGAAGAAGGTAGACAGATTCATGGTATAGTGACTAAAT 1189 |||| |||||||||||||||||||||||||| |||||| |||||||||| |||| ||||| Sbjct 1076 GGTGTTCGAATCTCGCAATGTTTGAAGAAGGCAGACAGGTTCATGGTATCGTGAGTAAAT 1135 Query 1190 ATGGTTTTGATAGAGATAAGTATGCCGGATCAGGGCTCATTGATTTATATGGGAAATGTG 1249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1136 ATGGTTTTGATAGAGATAAGTATGCCGGATCAGGGCTCATTGATTTATATGGGAAATGTG 1195 Query 1250 GATGCTCAGACATGGCAAGATTGGTTTTTGATACCTTGAGTGAAGTTGATGTTATATCTT 1309 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1196 GATGCTCAGACATGGCAAGGTTGGTTTTTGATACCTTGAGTGAAGTTGATGTTATATCTT 1255 Query 1310 TGAACACAATGATATACAGTTATGCACAGAACGGTTTTGGACGCGAAGCACTTGACTTGT 1369 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 1256 TGAACACAATGATATATAGTTATGCACAGAACGGTTTTGGACGCGAAGCACTTGAGTTGT 1315 Query 1370 TTGAGAGAATGATAAATCTTGGACTGCAGCCGAACGATGTAACAGTCTTGAGCGTACTCT 1429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1316 TTGAGAGAATGATAAATCTTGGACTGCAGCCGAACGATGTAACAGTCTTGAGCGTACTCT 1375 Query 1430 TGGCTTGTAATAACTCTAGATTAGTTGAGGAAGGTTGCGAACTCTTTGACTCCTTTAGAA 1489 ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 1376 TGGCTTGTAATAACTCTGGATTAGTTGAGGAAGGTTGCGAACTCTTTGAGTCCTTTAGAA 1435 Query 1490 AGGATAAGATCATGTTAACAAATGATCATTACGCGTGTATGGTAGATTTGCTTGGACGGG 1549 ||||||| ||||||||||| ||||||||||| || |||||||||||| |||||||||||| Sbjct 1436 AGGATAATATCATGTTAACGAATGATCATTATGCTTGTATGGTAGATATGCTTGGACGGG 1495 Query 1550 CAGGGAGATTAGAGGAAGCGGAAATGCTTACAACCGAGGTAATAAACCCGGATTTGGTTC 1609 |||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| Sbjct 1496 CAGGGAGATTAGAGGAAGCGGAAATGCTTATAACCGAGGTAACAAATCCGGATTTGGTTC 1555 Query 1610 TGTGGAGGACGCTGCTTAGTGCTTGTAAGGTTCATAGAAAGGTAGAAATGGCAGAGCGGA 1669 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1556 TGTGGAGGACGCTGCTTAGTGCTTGTAAGGTTCATAGAAAGGTAGAAATGGCAGAGCGGA 1615 Query 1670 TAACGAGAAAAATCCTAGAGATAGAACCTGGGGATGAAGGAACTCTCATTCTAATGTCAA 1729 |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 1616 TAACGAGAAAAATCCTAGAGATAGCACCTGGAGATGAAGGAACTCTCATTCTAATGTCAA 1675 Query 1730 ATCTCTACGCATCCACTGGGAAATGGAACAGGGTGATTGAGATGAAGAGCAAAATGAAGG 1789 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1676 ATCTCTACGCATCCACTGGGAAATGGAACAGGGTGATTGAGATGAAGAGCAAAATGAAGG 1735 Query 1790 ATATGAAACTAAAGAAGAATCCAGCAATGAGTTGGGTTGAAATCAATAAAGAGACGCATA 1849 | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1736 AGATGAAACTAAAGAAGAATCCAGCAATGAGTTGGGTTGAAATCGATAAAGAGACGCATA 1795 Query 1850 CATTCATGGCTGGAGATTTGTTTTCGCATCCCAACTCTGAGCAGATTCTTGAAAATCTCG 1909 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1796 CATTCATGGCTGGAGATTTGTTTTCGCATCCAAACTCTGAGCAGATTCTTGAAAATCTCG 1855 Query 1910 AAGAGCTGATTAAGAAGTCTAAAGATTTGGGATATGTAGAAGACAAAAGCTGTGTGTTTC 1969 ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| Sbjct 1856 AAGAGCTGATTAAGAAGGCTAAAGATTTGGGATATGTTGAAGACAAAAGCTGTGTGTTTC 1915 Query 1970 AAGACATGGAGGAGACTGCAAAAGAGAGATCTCTGCATCAACATAGCGAAAAACTCGCCA 2029 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1916 AAGACATGGAGGAGACTGCAAAAGAGAGATCTCTGCATCAACATAGCGAAAAACTCGCCA 1975 Query 2030 TAGCTTTCGCAGTGTGGAGAAATGTTGGTGGAAGTATAAGGATTCTAAAGAACCTTAGAG 2089 ||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1976 TAGCTTTTGCGGTTTGGAGAAACGTTGGTGGAAGTATAAGGATTCTAAAGAACCTTAGAG 2035 Query 2090 TTTGTGTTGATTGTCACAGTTGGATCAAGATCGTGTCAAGAGTTATGAAGAGAGAAATTA 2149 ||||||| |||||||||||||||||||||||||| |||||| |||| ||||||||||||| Sbjct 2036 TTTGTGTCGATTGTCACAGTTGGATCAAGATCGTATCAAGAATTATAAAGAGAGAAATTA 2095 Query 2150 TATGTAGAGATTCAAAAAGGTTTCATCATTTCAGAGATGGGTCTTGTTCGTGTGGGGATT 2209 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2096 TCTGTAGAGATTCAAAGAGGTTTCATCATTTCAGAGATGGGTCTTGTTCGTGTGGGGATT 2155 Query 2210 ATTGGTAA 2217 |||||||| Sbjct 2156 ATTGGTAA 2163 > Ahg951424 jgi|Araly1|951424|scaffold_803311.1 Length=1459 Score = 551 bits (298), Expect = 8e-156 Identities = 470/547 (86%), Gaps = 36/547 (7%) Strand=Plus/Plus Query 30 TGATCGGCGGAATAATGCGCCGGCAATGAGAAGAGATTATAACGGCGGATTGATCGCCTT 89 ||||||| ||| ||||||||||| |||||||||||||||| ||||||||||| Sbjct 25 TGATCGG-AGAA-AATGCGCCGGCGATGAGAAGAGATTATATCGGCGGATTGA------- 75 Query 90 TTCGAGATATTTCAGCTTCTTTTCTAGCAGAACATGTTCACCGGAATCATCTATCAATAA 149 ||| ||| ||||||||||||| ||| || ||| ||||| |||||||| |||||| ||| Sbjct 76 -TCG-GATTTTTCAGCTTCTTTGCTACCAAAACCTGTTCGCCGGAATCTTCTATCCATAG 133 Query 150 CCAGTTTAGGCTTCTCTGCATCACTTGTGATACCCTGACAACG-ACGCACAA-TTTCTCT 207 ||||| ||| ||||| |||||||||| | | || | || ||||| || |||| || Sbjct 134 TCAGTTAAGGTTTCTCAGCATCACTTGCG--A--CT--C--CGTACGCATAACTTTCCCT 185 Query 208 CAGCTTCTCAGACAATGCATCGACGAAAGATCGATATCAGGAATCAAGACTATCCAAGCC 267 | |||||||||||||||||| ||||||||||||||||||| | |||||| ||||||||| Sbjct 186 CCGCTTCTCAGACAATGCATGGACGAAAGATCGATATCAGCACTCAAGAAGATCCAAGCC 245 Query 268 CATATGCTGAAATCTGGT-TTTCCGGCCGAAATTTCCGGCAGCAAACTCGTCGACGCGAG 326 || ||||||||||||| | ||||||||||| ||||| | | | || | ||||||| Sbjct 246 CAGATGCTGAAATCTGCTAATTCCGGCCGAACTTTCC-G--G---A--CG-C-ACGCGAG 295 Query 327 TTTAAAGTGTGGCGATATCGATTACGCACGACAGGTGTTCGATGGAATGTCTGAGAGACA 386 ||||||||||||||| |||| ||||||||| ||| ||||||||||||||||||||||||| Sbjct 296 TTTAAAGTGTGGCGAGATCGGTTACGCACGCCAGATGTTCGATGGAATGTCTGAGAGACA 355 Query 387 TATTGTAACATGGAACTCT-TTAATTGCTTATTTAATTAAGCACAGAAGAAGCAAGGAAG 445 ||| ||||||||||||||| || ||||||||||| ||| ||||||||||||||||||||| Sbjct 356 TATCGTAACATGGAACTCTCTT-ATTGCTTATTTCATTGAGCACAGAAGAAGCAAGGAAG 414 Query 446 CTGTTGAGATGTATAGATTGATGATTACGAATAATGTTTTGCCAGATGAGTACACGTTGT 505 ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 415 CTGCTGAGATGTATAGATTGATGATCACGAATAATGTTTTGCCAGATGAGTACACGTTGT 474 Query 506 CTAGTGTTTTCAAGGCGTTTTCAGATTTGAGTCT-T-GAGAAGGAAGCACAGAGAAGCCA 563 | |||||||||||||||||||||||||||||||| | |||||||| |||||||| ||||| Sbjct 475 CCAGTGTTTTCAAGGCGTTTTCAGATTTGAGTCTCTTGAGAAGGAGGCACAGAGGAGCCA 534 Query 564 CGGACTT 570 ||||||| Sbjct 535 CGGACTT 541 Score = 372 bits (201), Expect = 7e-102 Identities = 259/285 (91%), Gaps = 11/285 (4%) Strand=Plus/Plus Query 1221 AGGGCTCATTGATTTATATGGG-AAATGTGGATGCTCAGACATGGCAAGATT-GG-TTTT 1277 |||||||||||||||||||||| ||| |||||||||||||||||||||| || || |||| Sbjct 752 AGGGCTCATTGATTTATATGGGAAAACGTGGATGCTCAGACATGGCAAGGTTGGGTTTTT 811 Query 1278 TGATACCTTGAGTGAAGTTGATGTTATATCTTTGAACACAATGATATACAGTTATGCACA 1337 ||| | |||||||||||||| |||||||||||||| ||||||| | |||||||||||||| Sbjct 812 TGACAACTTGAGTGAAGTTGCTGTTATATCTTTGAGCACAATGGTCTACAGTTATGCACA 871 Query 1338 GAACGGTTTTGGACGCGAAGCACTTGAC-TTGTTTGAGAGAATGATAAATCTTGGACTGC 1396 |||||||||||||||| ||||||||| | |||||||||| |||||||||||||||||| | Sbjct 872 GAACGGTTTTGGACGCAAAGCACTTG-CGTTGTTTGAGATAATGATAAATCTTGGACTAC 930 Query 1397 AGCCGAACGATGTAACAGTCTTGAGCGTACTCTTGGCTTGTAATAACTCTAGATTAGTTG 1456 |||| ||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 931 AGCCTAACGATGTAACAGTCTTGAGCGTACTCTTGGCTTGTAATAACTCTGGA---G--- 984 Query 1457 AGGAAGGTTGCGAACTCTTTGACTCCTTTAGAAAGGATAAGATCA 1501 |||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 985 AGGAAGGTTGCGAATTCTTTGACTCCTTCAGAAAGGATAAGATCA 1029 Score = 278 bits (150), Expect = 2e-73 Identities = 193/214 (90%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 948 TTTGGTCGATGATTCCTTGCGGGTTTTCAAGTGTATTGA-GTACCCAAATCAGGTGAGTT 1006 ||| ||||||||||||||||| ||| ||||| || || | ||||||||||||||| | || Sbjct 542 TTTAGTCGATGATTCCTTGCGAGTTCTCAAGGGT-TTCAGGTACCCAAATCAGGTAACTT 600 Query 1007 GGACGTCTCTTATATCAGGGCTTGTCCAAAATGGTAGAGAAGAGATGGCTCTAATCGAAT 1066 ||||||| ||| |||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 601 GGACGTCCCTTCTATCAGGGCTTGCCCAAAACGGTAGAGAAGAGATGGCTCTAATCGAAT 660 Query 1067 TTAGAAAAATGATGCGTGATTCAATCAAGCCTAACTCTTTTACATTGTCAAGTGCTCTCA 1126 |||||||||||||||| | |||| |||| || |||||||||||||||||||||||||||| Sbjct 661 TTAGAAAAATGATGCGCGGTTCAGTCAAACCCAACTCTTTTACATTGTCAAGTGCTCTCA 720 Query 1127 GGGGGTGCTCGAATCTCGCAATGTTTGAAGAAGG 1160 ||||||| ||||||||| ||||||||||| |||| Sbjct 721 GGGGGTGTTCGAATCTCACAATGTTTGAACAAGG 754 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83455726795 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5