BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65570.1
Length=2217
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496790 jgi|Araly1|496790|fgenesh2_kg.8__2606__AT5G65570.1 3430 0.0
Ahg951424 jgi|Araly1|951424|scaffold_803311.1 551 8e-156
> Ahg496790 jgi|Araly1|496790|fgenesh2_kg.8__2606__AT5G65570.1
Length=2163
Score = 3430 bits (1857), Expect = 0.0
Identities = 2066/2168 (95%), Gaps = 10/2168 (0%)
Strand=Plus/Plus
Query 55 ATGAGAAGAGATTATAACGGCGGATTGATCGCCTTTTCGAGATATTTCAGCTTCTTTTCT 114
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1 ATGAGAAGAGATTATAACGGCGGATTGATCGCCTTTTCGAGATATCTCAGCTTCTTTGCA 60
Query 115 AGCAGAACATGTTCACCGGAATC-ATCTATCAATAACCAGTTTAGGCTTCTCTGCATCAC 173
| || ||| |||||||||||| | ||||||||||| ||||||||||||||||||| ||||
Sbjct 61 ACCAAAACTTGTTCACCGGAA-CTATCTATCAATAGCCAGTTTAGGCTTCTCTGCGTCAC 119
Query 174 TTGTGA-TACCCTGACAACGACGCACAATTTCTCTCAGCTTCTCAGACAATGCATCGACG 232
|||||| | || ||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 120 TTGTGACT-CCTTGACAACGACGCACACTTTCTCTCAGCTTCTCAGACAATGCATAGACG 178
Query 233 AAAGATCGATATCAGGAATCAAGACTATCCAAGCCCATATGCTGAAATCTGGTTTTCCGG 292
||| |||||||||||||||||||| |||||||||||| ||||| ||||| |||||||| |
Sbjct 179 AAAAATCGATATCAGGAATCAAGAATATCCAAGCCCAGATGCTCAAATCAGGTTTTCCAG 238
Query 293 CCGAAATTTCCGGCAGCAAACTCGTCGACGCGAGTTT-AAAGTGTGGCGATATCGATTAC 351
|||| |||||||||| |||||||||||||||||||| ||| |||||||| |||| ||||
Sbjct 239 TCGAACTTTCCGGCAGTAAACTCGTCGACGCGAGTTTGAAA-TGTGGCGAGATCGGTTAC 297
Query 352 GCACGACAGGTGTTCGATGGAATGTCTGAGAGACATATTGTAACATGGAACTCT-TTAAT 410
||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 298 GCACGCCAGCTGTTCGATGGAATGCCTGAGAGACATATTGTAACATGGAACTCTATT-AT 356
Query 411 TGCTTATTTAATTAAGCACAGAAGAAGCAAGGAAGCTGTTGAGATGTATAGATTGATGAT 470
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TGCTTATTTCATTAAGCACAGAAGAAGCAAGGAAGCTGTTGAGATGTATAGATTGATGAT 416
Query 471 -TACGAATAATGTTTTGCCAGATGAGTACACGTTGTCTAGTGTTTTCAAGGCGTTTTCAG 529
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CT-CGAATAATGTTTTGCCAGATGAGTACACGTTGTCTAGTGTTTTCAAGGCGTTTTCAG 475
Query 530 ATTTGAGTCTTGAGAAGGAAGCACAGAGAAGCCACGGACTTGCTGTGATTTTGGGTTTGG 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 ATTTGAGTCTTGAGAAGGAAGCACAGAGAAGCCACGGACTTGCTGTGATTTTGGGTTTGG 535
Query 590 AAGTCTCAAACGTGTTCGTTGGAAGTGCTCTTGTGGATATGTATGTAAAGTTTGGTAAAA 649
||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 536 AAGTCTCGAACGTGTTTGTGGGAAGTGCCCTTGTGGATATGTATGTAAAGTTTGGTAAAA 595
Query 650 CGAGGGAGGCGAAGTTAGTATTGGACCGCGTGGAGGAGAAAGATGTAGTTTTGATCACAG 709
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CGAGGGAGGCAAAGTTAGTTTTGGACCGCGTGGAGGAGAAAGATGTAGTTTTGATCACAG 655
Query 710 CTTTGATCGTTGGTTACTCGCAGAAGGGTGAAGATACTGAAGCTGTGAAGGCATTTCAAA 769
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CTTTGATTGTTGGTTACTCGCAGAAGGGTGAAGATACTGAAGCTGTGAAGGCATTTCAAA 715
Query 770 GTATGTTGGTGGAGAAAGTTCAGCCTAATGAGTATACTTACGCTAGTGTATTGATTTCTT 829
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 716 GTATGTTGGTTGAGAAAGTTCAGCCTAACGAGTATACTTACGCTAGTGTATTGATATCTT 775
Query 830 GTGGAAACTTAAAGGATATAGGTAATGGCAAGTTGATTCATGGACTTATGGTCAAGTCCG 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 776 GTGGAAACTTAAAGGATATAGGTAATGGCAAGTTGATTCATGGACTTATGGTCAAATCCG 835
Query 890 GTTTTGAGTCTGCGCTTGCTTCACAAACTTCTCTTCTTACCATGTATTTGAGGTGCAGTT 949
||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||| |
Sbjct 836 GTTTTGAGTCTGCTCTTGCTTCGCAAACTTCTCTTCTTACAATGTACTTGAGGTGCAGCT 895
Query 950 TGGTCGATGATTCCTTGCGGGTTTTCAAGTGTATTGAGTACCCAAATCAGGTGAGTTGGA 1009
| |||||||||||| | | |||||| ||||||||| |||||||||||||||| | |||||
Sbjct 896 TAGTCGATGATTCCCTACTGGTTTTTAAGTGTATTAAGTACCCAAATCAGGTAACTTGGA 955
Query 1010 CGTCTCTTATATCAGGGCTTGTCCAAAATGGTAGAGAAGAGATGGCTCTAATCGAATTTA 1069
||||||| |||||||||||||| ||||| ||||||||||||| |||||||||||||||||
Sbjct 956 CGTCTCTCATATCAGGGCTTGTACAAAACGGTAGAGAAGAGACGGCTCTAATCGAATTTA 1015
Query 1070 GAAAAATGATGCGTGATTCAATCAAGCCTAACTCTTTTACATTGTCAAGTGCTCTCAGGG 1129
||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1016 GAAAAATGATGCGAGATTCAGTCAAGCCCAACTCTTTTACATTGTCAAGTGCTCTCAGGG 1075
Query 1130 GGTGCTCGAATCTCGCAATGTTTGAAGAAGGTAGACAGATTCATGGTATAGTGACTAAAT 1189
|||| |||||||||||||||||||||||||| |||||| |||||||||| |||| |||||
Sbjct 1076 GGTGTTCGAATCTCGCAATGTTTGAAGAAGGCAGACAGGTTCATGGTATCGTGAGTAAAT 1135
Query 1190 ATGGTTTTGATAGAGATAAGTATGCCGGATCAGGGCTCATTGATTTATATGGGAAATGTG 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 ATGGTTTTGATAGAGATAAGTATGCCGGATCAGGGCTCATTGATTTATATGGGAAATGTG 1195
Query 1250 GATGCTCAGACATGGCAAGATTGGTTTTTGATACCTTGAGTGAAGTTGATGTTATATCTT 1309
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GATGCTCAGACATGGCAAGGTTGGTTTTTGATACCTTGAGTGAAGTTGATGTTATATCTT 1255
Query 1310 TGAACACAATGATATACAGTTATGCACAGAACGGTTTTGGACGCGAAGCACTTGACTTGT 1369
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1256 TGAACACAATGATATATAGTTATGCACAGAACGGTTTTGGACGCGAAGCACTTGAGTTGT 1315
Query 1370 TTGAGAGAATGATAAATCTTGGACTGCAGCCGAACGATGTAACAGTCTTGAGCGTACTCT 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TTGAGAGAATGATAAATCTTGGACTGCAGCCGAACGATGTAACAGTCTTGAGCGTACTCT 1375
Query 1430 TGGCTTGTAATAACTCTAGATTAGTTGAGGAAGGTTGCGAACTCTTTGACTCCTTTAGAA 1489
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1376 TGGCTTGTAATAACTCTGGATTAGTTGAGGAAGGTTGCGAACTCTTTGAGTCCTTTAGAA 1435
Query 1490 AGGATAAGATCATGTTAACAAATGATCATTACGCGTGTATGGTAGATTTGCTTGGACGGG 1549
||||||| ||||||||||| ||||||||||| || |||||||||||| ||||||||||||
Sbjct 1436 AGGATAATATCATGTTAACGAATGATCATTATGCTTGTATGGTAGATATGCTTGGACGGG 1495
Query 1550 CAGGGAGATTAGAGGAAGCGGAAATGCTTACAACCGAGGTAATAAACCCGGATTTGGTTC 1609
|||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||
Sbjct 1496 CAGGGAGATTAGAGGAAGCGGAAATGCTTATAACCGAGGTAACAAATCCGGATTTGGTTC 1555
Query 1610 TGTGGAGGACGCTGCTTAGTGCTTGTAAGGTTCATAGAAAGGTAGAAATGGCAGAGCGGA 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 TGTGGAGGACGCTGCTTAGTGCTTGTAAGGTTCATAGAAAGGTAGAAATGGCAGAGCGGA 1615
Query 1670 TAACGAGAAAAATCCTAGAGATAGAACCTGGGGATGAAGGAACTCTCATTCTAATGTCAA 1729
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1616 TAACGAGAAAAATCCTAGAGATAGCACCTGGAGATGAAGGAACTCTCATTCTAATGTCAA 1675
Query 1730 ATCTCTACGCATCCACTGGGAAATGGAACAGGGTGATTGAGATGAAGAGCAAAATGAAGG 1789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 ATCTCTACGCATCCACTGGGAAATGGAACAGGGTGATTGAGATGAAGAGCAAAATGAAGG 1735
Query 1790 ATATGAAACTAAAGAAGAATCCAGCAATGAGTTGGGTTGAAATCAATAAAGAGACGCATA 1849
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1736 AGATGAAACTAAAGAAGAATCCAGCAATGAGTTGGGTTGAAATCGATAAAGAGACGCATA 1795
Query 1850 CATTCATGGCTGGAGATTTGTTTTCGCATCCCAACTCTGAGCAGATTCTTGAAAATCTCG 1909
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1796 CATTCATGGCTGGAGATTTGTTTTCGCATCCAAACTCTGAGCAGATTCTTGAAAATCTCG 1855
Query 1910 AAGAGCTGATTAAGAAGTCTAAAGATTTGGGATATGTAGAAGACAAAAGCTGTGTGTTTC 1969
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1856 AAGAGCTGATTAAGAAGGCTAAAGATTTGGGATATGTTGAAGACAAAAGCTGTGTGTTTC 1915
Query 1970 AAGACATGGAGGAGACTGCAAAAGAGAGATCTCTGCATCAACATAGCGAAAAACTCGCCA 2029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 AAGACATGGAGGAGACTGCAAAAGAGAGATCTCTGCATCAACATAGCGAAAAACTCGCCA 1975
Query 2030 TAGCTTTCGCAGTGTGGAGAAATGTTGGTGGAAGTATAAGGATTCTAAAGAACCTTAGAG 2089
||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1976 TAGCTTTTGCGGTTTGGAGAAACGTTGGTGGAAGTATAAGGATTCTAAAGAACCTTAGAG 2035
Query 2090 TTTGTGTTGATTGTCACAGTTGGATCAAGATCGTGTCAAGAGTTATGAAGAGAGAAATTA 2149
||||||| |||||||||||||||||||||||||| |||||| |||| |||||||||||||
Sbjct 2036 TTTGTGTCGATTGTCACAGTTGGATCAAGATCGTATCAAGAATTATAAAGAGAGAAATTA 2095
Query 2150 TATGTAGAGATTCAAAAAGGTTTCATCATTTCAGAGATGGGTCTTGTTCGTGTGGGGATT 2209
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2096 TCTGTAGAGATTCAAAGAGGTTTCATCATTTCAGAGATGGGTCTTGTTCGTGTGGGGATT 2155
Query 2210 ATTGGTAA 2217
||||||||
Sbjct 2156 ATTGGTAA 2163
> Ahg951424 jgi|Araly1|951424|scaffold_803311.1
Length=1459
Score = 551 bits (298), Expect = 8e-156
Identities = 470/547 (86%), Gaps = 36/547 (7%)
Strand=Plus/Plus
Query 30 TGATCGGCGGAATAATGCGCCGGCAATGAGAAGAGATTATAACGGCGGATTGATCGCCTT 89
||||||| ||| ||||||||||| |||||||||||||||| |||||||||||
Sbjct 25 TGATCGG-AGAA-AATGCGCCGGCGATGAGAAGAGATTATATCGGCGGATTGA------- 75
Query 90 TTCGAGATATTTCAGCTTCTTTTCTAGCAGAACATGTTCACCGGAATCATCTATCAATAA 149
||| ||| ||||||||||||| ||| || ||| ||||| |||||||| |||||| |||
Sbjct 76 -TCG-GATTTTTCAGCTTCTTTGCTACCAAAACCTGTTCGCCGGAATCTTCTATCCATAG 133
Query 150 CCAGTTTAGGCTTCTCTGCATCACTTGTGATACCCTGACAACG-ACGCACAA-TTTCTCT 207
||||| ||| ||||| |||||||||| | | || | || ||||| || |||| ||
Sbjct 134 TCAGTTAAGGTTTCTCAGCATCACTTGCG--A--CT--C--CGTACGCATAACTTTCCCT 185
Query 208 CAGCTTCTCAGACAATGCATCGACGAAAGATCGATATCAGGAATCAAGACTATCCAAGCC 267
| |||||||||||||||||| ||||||||||||||||||| | |||||| |||||||||
Sbjct 186 CCGCTTCTCAGACAATGCATGGACGAAAGATCGATATCAGCACTCAAGAAGATCCAAGCC 245
Query 268 CATATGCTGAAATCTGGT-TTTCCGGCCGAAATTTCCGGCAGCAAACTCGTCGACGCGAG 326
|| ||||||||||||| | ||||||||||| ||||| | | | || | |||||||
Sbjct 246 CAGATGCTGAAATCTGCTAATTCCGGCCGAACTTTCC-G--G---A--CG-C-ACGCGAG 295
Query 327 TTTAAAGTGTGGCGATATCGATTACGCACGACAGGTGTTCGATGGAATGTCTGAGAGACA 386
||||||||||||||| |||| ||||||||| ||| |||||||||||||||||||||||||
Sbjct 296 TTTAAAGTGTGGCGAGATCGGTTACGCACGCCAGATGTTCGATGGAATGTCTGAGAGACA 355
Query 387 TATTGTAACATGGAACTCT-TTAATTGCTTATTTAATTAAGCACAGAAGAAGCAAGGAAG 445
||| ||||||||||||||| || ||||||||||| ||| |||||||||||||||||||||
Sbjct 356 TATCGTAACATGGAACTCTCTT-ATTGCTTATTTCATTGAGCACAGAAGAAGCAAGGAAG 414
Query 446 CTGTTGAGATGTATAGATTGATGATTACGAATAATGTTTTGCCAGATGAGTACACGTTGT 505
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 415 CTGCTGAGATGTATAGATTGATGATCACGAATAATGTTTTGCCAGATGAGTACACGTTGT 474
Query 506 CTAGTGTTTTCAAGGCGTTTTCAGATTTGAGTCT-T-GAGAAGGAAGCACAGAGAAGCCA 563
| |||||||||||||||||||||||||||||||| | |||||||| |||||||| |||||
Sbjct 475 CCAGTGTTTTCAAGGCGTTTTCAGATTTGAGTCTCTTGAGAAGGAGGCACAGAGGAGCCA 534
Query 564 CGGACTT 570
|||||||
Sbjct 535 CGGACTT 541
Score = 372 bits (201), Expect = 7e-102
Identities = 259/285 (91%), Gaps = 11/285 (4%)
Strand=Plus/Plus
Query 1221 AGGGCTCATTGATTTATATGGG-AAATGTGGATGCTCAGACATGGCAAGATT-GG-TTTT 1277
|||||||||||||||||||||| ||| |||||||||||||||||||||| || || ||||
Sbjct 752 AGGGCTCATTGATTTATATGGGAAAACGTGGATGCTCAGACATGGCAAGGTTGGGTTTTT 811
Query 1278 TGATACCTTGAGTGAAGTTGATGTTATATCTTTGAACACAATGATATACAGTTATGCACA 1337
||| | |||||||||||||| |||||||||||||| ||||||| | ||||||||||||||
Sbjct 812 TGACAACTTGAGTGAAGTTGCTGTTATATCTTTGAGCACAATGGTCTACAGTTATGCACA 871
Query 1338 GAACGGTTTTGGACGCGAAGCACTTGAC-TTGTTTGAGAGAATGATAAATCTTGGACTGC 1396
|||||||||||||||| ||||||||| | |||||||||| |||||||||||||||||| |
Sbjct 872 GAACGGTTTTGGACGCAAAGCACTTG-CGTTGTTTGAGATAATGATAAATCTTGGACTAC 930
Query 1397 AGCCGAACGATGTAACAGTCTTGAGCGTACTCTTGGCTTGTAATAACTCTAGATTAGTTG 1456
|||| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 931 AGCCTAACGATGTAACAGTCTTGAGCGTACTCTTGGCTTGTAATAACTCTGGA---G--- 984
Query 1457 AGGAAGGTTGCGAACTCTTTGACTCCTTTAGAAAGGATAAGATCA 1501
|||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 985 AGGAAGGTTGCGAATTCTTTGACTCCTTCAGAAAGGATAAGATCA 1029
Score = 278 bits (150), Expect = 2e-73
Identities = 193/214 (90%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 948 TTTGGTCGATGATTCCTTGCGGGTTTTCAAGTGTATTGA-GTACCCAAATCAGGTGAGTT 1006
||| ||||||||||||||||| ||| ||||| || || | ||||||||||||||| | ||
Sbjct 542 TTTAGTCGATGATTCCTTGCGAGTTCTCAAGGGT-TTCAGGTACCCAAATCAGGTAACTT 600
Query 1007 GGACGTCTCTTATATCAGGGCTTGTCCAAAATGGTAGAGAAGAGATGGCTCTAATCGAAT 1066
||||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 601 GGACGTCCCTTCTATCAGGGCTTGCCCAAAACGGTAGAGAAGAGATGGCTCTAATCGAAT 660
Query 1067 TTAGAAAAATGATGCGTGATTCAATCAAGCCTAACTCTTTTACATTGTCAAGTGCTCTCA 1126
|||||||||||||||| | |||| |||| || ||||||||||||||||||||||||||||
Sbjct 661 TTAGAAAAATGATGCGCGGTTCAGTCAAACCCAACTCTTTTACATTGTCAAGTGCTCTCA 720
Query 1127 GGGGGTGCTCGAATCTCGCAATGTTTGAAGAAGG 1160
||||||| ||||||||| ||||||||||| ||||
Sbjct 721 GGGGGTGTTCGAATCTCACAATGTTTGAACAAGG 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83455726795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5