BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G65580.1

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935685 jgi|Araly1|935685|scaffold_403673.1                        209    8e-54
  Ahg951409 jgi|Araly1|951409|scaffold_803296.1                       67.6    5e-11


> Ahg935685 jgi|Araly1|935685|scaffold_403673.1
Length=444

 Score =  209 bits (113),  Expect = 8e-54
 Identities = 146/160 (91%), Gaps = 10/160 (6%)
 Strand=Plus/Minus

Query  153  GAGCGTGATGGAAGTTGATGCTGATTCTTCTTCGACCAAGATGATGCCT----CAGAC--  206
            ||||||||||||||||||||||||||||||||||||||||||||  |||    | |||  
Sbjct  173  GAGCGTGATGGAAGTTGATGCTGATTCTTCTTCGACCAAGATGAAACCTGAGACCGACAG  114

Query  207  CGACGGCGGAGATGGCgagagagagagacgactgagaggagagGTCAAAGGATTCTCGTT  266
            ||||||||||||| ||  ||||||||||||||||||||||||  ||||||||||||||||
Sbjct  113  CGACGGCGGAGATTGC--GAGAGAGAGACGACTGAGAGGAGA--TCAAAGGATTCTCGTT  58

Query  267  TCCATTGACGACGATGGTGGAGGAAGAAAGCAATCATCAA  306
            ||||||||||||||||||||||||||||||||||||||||
Sbjct  57   TCCATTGACGACGATGGTGGAGGAAGAAAGCAATCATCAA  18


> Ahg951409 jgi|Araly1|951409|scaffold_803296.1
Length=280

 Score = 67.6 bits (36),  Expect = 5e-11
 Identities = 38/39 (97%), Gaps = 0/39 (0%)
 Strand=Plus/Minus

Query  77   TTGGCTTGCCGTTGCTCTTCGCCAAATCTTCACCAACCA  115
            |||| ||||||||||||||||||||||||||||||||||
Sbjct  224  TTGGTTTGCCGTTGCTCTTCGCCAAATCTTCACCAACCA  186



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10874342865


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5