BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65590.1
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496791 jgi|Araly1|496791|fgenesh2_kg.8__2607__AT5G65590.1 2061 0.0
Ahg487022 jgi|Araly1|487022|fgenesh2_kg.6__156__AT5G02460.1 158 1e-37
Ahg473042 jgi|Araly1|473042|fgenesh2_kg.1__2996__AT1G28310.2 106 5e-22
Ahg938123 jgi|Araly1|938123|scaffold_502314.1 69.4 6e-11
> Ahg496791 jgi|Araly1|496791|fgenesh2_kg.8__2607__AT5G65590.1
Length=1370
Score = 2061 bits (1116), Expect = 0.0
Identities = 1309/1397 (94%), Gaps = 33/1397 (2%)
Strand=Plus/Plus
Query 1 CTCTCCTCTCCTACTTTACTTATTT-C-ATTCAAAGCAAGAAATCGAAAAAGGACCCCAA 58
||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||
Sbjct 1 CTCTCCTCTCCTACTTTACTTATTTCCTATTCAAAGCAAGAAATCGAAAAAGGACCTCAA 60
Query 59 AC-TTTTTTCT-TCCTTCATCTTTCTCTCCTCCCATCATCATCACCATGTCCTCCCATAC 116
|| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTTTTTTTCTATCCTTCATTTTTCTCTCCTCCCATCATCATCACCATGTCCTCCCATAC 120
Query 117 CAATCTCCCCTCTCCCAAACCAGTTCCTAAACCAGATCACCGTATCTCCGGTACATCCCA 176
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 CAATCTCCCCTCTCCCAAACCAGTTCCTAAACCGGATCACCGTATCTCCGGTACATCCCA 180
Query 177 AACCAAGAAACCACCGTCTTCCTCCGTAGCTCAAGACCAACAAAACCTAAAATGCCCTCG 236
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 AACCAAGAAACCACCGTCTTCCTCCGTCGCTCAAGACCAACAAAACCTAAAATGCCCTCG 240
Query 237 TTGCAACTCTCCAAACACAAAGTTCTGTTACTACAACAACTACAGTCTCTCTCAACCTCG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 CTGCAACTCTCCAAACACAAAGTTCTGTTACTACAACAACTACAGTCTCTCTCAGCCTCG 300
Query 297 TCACTTCTGCAAATCTTGTCGCCGTTACTGGACACGTGGCGGTGCTCTAAGAAACGTCCC 356
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||
Sbjct 301 TCACTTCTGCAAATCTTGTCGCCGTTACTGGACACGTGGCGGCGCTTTAAGAAACGTTCC 360
Query 357 CATCGGTGGTGGTTGCCGGAAAACCAAAAAATCTATCAAACCTAATTCCTCCATGAACAC 416
||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||
Sbjct 361 CATCGGTGGTGGTTGCCGGAAAACCAAAAAATCCATCAAACCTAACTCCTCCCTGAACAC 420
Query 417 ACTTCCTTCGTCTTCTTCCTCTCAGAGGTTCTTCTCATCAATCATGGAAGATTCATCCAA 476
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 ACTTCCTTCGTCTTCTTCTTCTCAGAGGTTCTTCTCTTCAATCATGGAAGATTCATCCAA 480
Query 477 ATTCTTCCCTCCTCCGACAACAATGGATTTTCAGCTGGCCGGATTATCTCTCAACAAAAT 536
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 481 ATTCTTCCCTCCTCCGACAACAATGGATTTTCAGCTCGCTGGCTTATCTCTCAACAAAAT 540
Query 537 GAACGATCTTCAACTTTTGAATAACCAAGAAGTTCTTGATCTTAGGCCCATGATGTCCTC 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 GAACGATCTTCAACTTTTGAATAACCAAGAAGTTCTTGATCTTAGGCCCATGATCTCCTC 600
Query 597 GGGCCGAGAAAACACACCCGTTGATGTCGGGTCGGGTTTATCCCTAATGGGTTTTGGAGA 656
||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 601 GGGTCGAGAAAACACACCCGTTGATGTCGGGTCGGGTTTATCCTTAATGGGTTTCGGAGA 660
Query 657 TTTCAACAACAACCATTCACCGACGGGGTTCACAACCGCCGGAGCAAGCGACGGAAACTT 716
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 661 TTACAACAACAACCATTCACCGACGGCTTTCACAACCGCCGGAGCAAGCGACGGGAACTT 720
Query 717 AGCTTCTTCTATAGAGACTTTGAGTTGTTTAAACCAAGATTTACACTGGAGGCTTCAGCA 776
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGCTTCTTCCATAGAGACTTTGAGTTGTTTAAACCAAGATTTACACTGGAGGCTTCAGCA 780
Query 777 ACAGAGGATGGCGATGCTTTTTGGTAATTCTAAGGAAGAAACTGTTGTCGTCGAGAGGCC 836
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 781 ACAGAGGATGGCGATGCTTTTTGGTAATTCTAAGGAAGAAACTGTTGTTGTGGAGAGGCC 840
Query 837 ACAACCTATTCTTTATCGGAATCTTGAGATCGTAAACTCATCATCGCCGTCGTCGCCGAC 896
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 841 ACAACCTATTCTTTATCGGAATCTTGAGATCGTGAACTCATCATCGCCGTCGTCTCCGAC 900
Query 897 GAAGAAAGGAGATAATCAGACAGAGTGGTATTTTGGTAATAACAGTGATAATGAAGGAGT 956
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 901 GAAGAAAGGAGATAATCAGACAGAGTGGTATTTTGGTAATAATAGTGATAATGAAGGAGT 960
Query 957 GATTAGTAATAATGCTAATACAGGAGGAGGAGGAAGTGAATGGAACAATGGAATTCAAGC 1016
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 961 GATTAGTAATAATGCTAATACAGGAGGAGGA--A-GTGAATGGAACAATGGAATTCAAGC 1017
Query 1017 TTGGACTGATCTTAATCATTATAATGCATTGCCTTGAATCTTGGTAAGTTTAAGAAACTA 1076
|||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1018 TTGGGCTGATCTTAATCATTATAATGCTTTGCCTTGATTCTTGGTAAGTTTAAGAAACTA 1077
Query 1077 TATAATCTATAATTTCATATAATCTATTTGCTATGTGTTGTGATGTAATGCCAAAACTAT 1136
||||||||||||||| |||| | || | | || | |||||||||||||||||||||
Sbjct 1078 TATAATCTATAATTT--TATA-T--AT--G-T--GT-T-GTGATGTAATGCCAAAACTAT 1125
Query 1137 TTATGTTTGTAGtttttttttttttttGTATTCTTTTTGTTGTCGTTGTTGGTTACTATT 1196
|||||||||||||||||| ||||| || ||||||| |||||||||||||||| ||
Sbjct 1126 TTATGTTTGTAGTTTTTTCTTTTTGGGGTGTTCTTTTCGTTGTCGTTGTTGGTT--TA-- 1181
Query 1197 CTAGTATTTTAAGTTTCAATTTGTAAACaaaaaaaCAAAATTGGGGGAGATATTCAAGAA 1256
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 ---GTACTTTAAGTTTCAATTTGTAAACAAAAAAACAAAATTGGGGGAGATATTCAAGAA 1238
Query 1257 TGGAGAGAGATACTTACATTATATACTGGTGATTTGTCTGT-ATT-GAATTGAAAGGTGG 1314
||||||||||||||||||| ||||| | | || | | ||| ||| | | || | |||
Sbjct 1239 TGGAGAGAGATACTTACATAATATATTC-T-ATATATTTGTGATTTGTCT--AA-GTTGG 1293
Query 1315 AACAGAACTTACTGTGTTTAATTATCGGAAAGCTCTTGGTTTGGTGATGAAATGTTCACT 1374
||||||| ||||||||||||||||| | ||||||||||||||| || |||||||||||||
Sbjct 1294 AACAGAATTTACTGTGTTTAATTATTGAAAAGCTCTTGGTTTGATGGTGAAATGTTCACT 1353
Query 1375 TAATGACTTATTGGATG 1391
|||||||||||||||||
Sbjct 1354 TAATGACTTATTGGATG 1370
> Ahg487022 jgi|Araly1|487022|fgenesh2_kg.6__156__AT5G02460.1
Length=1563
Score = 158 bits (85), Expect = 1e-37
Identities = 121/138 (88%), Gaps = 4/138 (3%)
Strand=Plus/Plus
Query 250 AACA-CAAAGTTCTGTTACTACAACAACTACAGTCTCTCTCAACCTCGTCACTTCTGCAA 308
|||| |||| |||||||||| |||||||||||||||| |||||||||| ||||| |||||
Sbjct 370 AACACCAAA-TTCTGTTACTTCAACAACTACAGTCTCACTCAACCTCGCCACTTTTGCAA 428
Query 309 ATCTTGTCGCCGTTACTGGACACGTGGCGGTGCTCTAAGAAACGTCCCCATCGGTGGTGG 368
| | || || ||||||||||||||||||||||||||||| | ||| ||| ||||||||||
Sbjct 429 AGCATGCCGTCGTTACTGGACACGTGGCGGTGCTCTAAGGAGCGTTCCCGTCGGTGGTGG 488
Query 369 TTGCCGGA-AAACCAAAA 385
|||||| | |||| ||||
Sbjct 489 TTGCCGTAGAAAC-AAAA 505
> Ahg473042 jgi|Araly1|473042|fgenesh2_kg.1__2996__AT1G28310.2
Length=1613
Score = 106 bits (57), Expect = 5e-22
Identities = 130/164 (79%), Gaps = 10/164 (6%)
Strand=Plus/Plus
Query 226 AAATGCCCTCGTTGCAACTC-TCCAAACACAAAGTTCTGTTACTACAACAACTACAGTCT 284
|||||||||||||| | || ||| |||||||||||||||||||||||||||||||| ||
Sbjct 125 AAATGCCCTCGTTGTGATTCTTCC-AACACAAAGTTCTGTTACTACAACAACTACAGCCT 183
Query 285 CTCTCAACCTCGTCACTTCTGCAAATCTTGTC--GCCGTTACTGGAC-ACGTGGCGGTG- 340
|||||| || || ||||| ||||| |||| | | || ||||||| | | || || |
Sbjct 184 CTCTCAGCCACGGCACTTTTGCAAGGCTTG-CAAGAGGT-ACTGGACGA-GAGGTGG-GA 239
Query 341 CTCTAAGAAACGTCCCCATCGGTGGTGGTTGCCGGAAAACCAAA 384
|||| || ||||| ||| | || ||| | | |||||||| ||||
Sbjct 240 CTCTCAGGAACGTTCCCGTAGGCGGTAGCTACCGGAAAAACAAA 283
> Ahg938123 jgi|Araly1|938123|scaffold_502314.1
Length=798
Score = 69.4 bits (37), Expect = 6e-11
Identities = 57/66 (86%), Gaps = 3/66 (5%)
Strand=Plus/Plus
Query 245 CTCCAAACACAAAGTTCTGTTACTACAACAACTACAGTCTCTCTCAACCTCG-TCACTTC 303
|||| ||||||||||||||||||||||||||||| || || |||| ||||| | ||||
Sbjct 119 CTCC-AACACAAAGTTCTGTTACTACAACAACTATAGCCTAACTCAGCCTCGCT-ACTTT 176
Query 304 TGCAAA 309
||||||
Sbjct 177 TGCAAA 182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51993184425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5