BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65620.1
Length=2514
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951411 jgi|Araly1|951411|scaffold_803298.1 4058 0.0
Ahg487887 jgi|Araly1|487887|fgenesh2_kg.6__1021__AT5G10540.1 2455 0.0
Ahg497269 jgi|Araly1|497269|fgenesh2_kg.112__1__AT5G65620.1 2250 0.0
> Ahg951411 jgi|Araly1|951411|scaffold_803298.1
Length=2415
Score = 4058 bits (2197), Expect = 0.0
Identities = 2336/2404 (97%), Gaps = 5/2404 (0%)
Strand=Plus/Plus
Query 2 ACGCTTGTAATAGCAAACATGTTAATGGCGACTCCAACGTCTCGAGCCTCTCTCAATCTT 61
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 4 ACGCTTGTAATAGCAAACATGTTAATGGCGACTCCAACGTCTCGAGCGTCTCTCAATCTT 63
Query 62 CTTCGTCGATCGCCAAAACCCAAATATTTCTCATCTTCTTCTTGTCATTTTCGTCCCTCA 121
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 64 CTTCGTCGTTCACCAAAACCCAAATATTTCTCATCTTCTTCTTGTCAATTTCGTCCCTCA 123
Query 122 ACTTTTCGTAAATCATATCCTTGCCCCATCTGGtcttcttctttctctttttgtctccct 181
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 124 ACTTTTCGTAAATCATATCCTTGCCCCATCTGGTCTTCTTCTTTCTCTTTCTGTCTCCCT 183
Query 182 cctcctagatccaccacttccacctctctctcctcctcctctttccgccccttctcctct 241
|||||||||||||| || ||||||||||||||||||| | | ||||| ||||||||||||
Sbjct 184 CCTCCTAGATCCACTACCTCCACCTCTCTCTCCTCCT-C-C-TTCCGTCCCTTCTCCTCT 240
Query 242 cctccgtccatgtcttccgccgccgctgccgccgTGGAATCCGTCGTCTCCGACGAGACT 301
|||||||| |||||||||||||||||||||||||| || || || ||||||| ||||||
Sbjct 241 CCTCCGTCTATGTCTTCCGCCGCCGCTGCCGCCGTAGACTCTGTTATCTCCGAGGAGACT 300
Query 302 CTTTCCTCGAATCCTCTCTTGCAGGACTTCGATTTCCCTCCGTTTGATTCCGTTGATGCC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTTCCTCGAATCCTCTCTTGCAGGACTTCGATTTCCCTCCGTTTGATTCCGTTGATGCC 360
Query 362 AGTCATGTTCGTCCTGGGATTCGTGCTCTATTGCAGCATCTCGAAGCTGAATTGGAGGAG 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGTCATGTTCGTCCTGGGATTCGTGCTCTATTGCAGCATCTCGAAGCTGAATTGGAGGAG 420
Query 422 CTAGAGAAATCTGTGGAGCCAACATGGCCAAAACTGGTGGAACCATTAGAGAAAATCGTT 481
||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||||||
Sbjct 421 CTAGAGAAATCTGTGGAGCCATCGTGGCCAAATCTGGTTGAACCATTAGAGAAAATCGTT 480
Query 482 GATCGGTTAACTGTTGTTTGGGGAATGATCAATCACCTTAAGGCTGTCAAGGACACACCT 541
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 481 GATCGGTTAACTGTTGTTTGGGGAATGATCAATCACCTTAAAGCTGTTAAGGACACACCT 540
Query 542 GAGCTACGTGCTGCCATCGAAGACGTTCAGCCAGAGAAAGTGAAGTTCCAGCTCAGGTTG 601
||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 541 GAGCTTCGTGCTGCCATTGAAGACGTTCAGCCAGAGAAGGTGAAGTTCCAGCTCAGATTG 600
Query 602 GGGCAAAGCAAGCCTATTTACAATGCCTTTAAAGCTATTCGTGAATCTCCTGATTGGTCA 661
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGACAAAGCAAGCCTATTTACAATGCCTTTAAAGCTATTCGTGAATCTCCTGATTGGTCA 660
Query 662 TCGCTCAGTGAAGCTCGTCAACGCTTAGTAGAAGCTCAAATAAAGGAGGCGGTTCTCATT 721
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 661 TCTCTCAGTGAAGCTCGTCAACGCTTAGTAGAAGCTCAAATTAAGGAGGCGGTTCTCATA 720
Query 722 GGTATTGCTCTTGATGATGAAAAGAGAGAAGAGTTTAATAAAATTGAACAGGAACTCGAA 781
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 721 GGTATTGCTCTTGATGATGAAAAGAGAGAAGAGTTTAACAAAATTGAACAGGAACTCGAA 780
Query 782 AAACTTTCCCATAAGTTTTCTGAGAATGTTTTGGATGCAACAAAGAAATTTGAAAAGTTG 841
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 AAACTTTCCCATAAGTTTTCTGAGAATGTTTTGGATGCTACAAAGAAATTTGAAAAGTTG 840
Query 842 ATAACAGACAAGAAAGAGATCGAGGGATTGCCTCCATCTGCTCTTGGGCTATTCGCACAA 901
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 841 ATTACAGACAAGAAAGAGATCGAGGGATTGCCTCCATCTGCTCTCGGGCTATTCGCACAA 900
Query 902 GCAGCTGTCTCCAAGGGCCATGAAAATGCAACTGCTGAGAATGGACCATGGATCATTACA 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GCAGCTGTCTCCAAGGGCCATGAAAATGCAACTGCTGAGAATGGACCATGGATCATTACA 960
Query 962 CTGGATGCTCCTAGTTATCTTCCTGTCATGCAACATGCTAAAAACCGTGCTCTGCGTGAG 1021
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 961 CTAGATGCTCCTAGTTATCTTCCTGTCATGCAACATGCTAAGAACCGTGCTCTGCGTGAG 1020
Query 1022 GAAGTCTACCGTGCTTACCTATCTCGTGCCTCTTCTGGCGATTTGGATAATACGGCAATT 1081
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1021 GAAGTTTACCGTGCTTACCTATCTCGTGCCTCTTCTGGCGATTTGGATAATACAGCAATT 1080
Query 1082 ATTGACCAGATTTTGAAGCTTCGCTTGGAAAAAGCTAAGCTTCTTGGTTACAACAATTAC 1141
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ATCGACCAGATCTTGAAGCTTCGCTTGGAAAAAGCTAAGCTTCTTGGTTACAACAATTAC 1140
Query 1142 GCTGAGGTAAGCATGGCTATGAAAATGGCTACTGTTGAGAAAGCAGCAGAGCTTTTAGAG 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GCTGAGGTAAGCATGGCTATGAAAATGGCTACTGTTGAGAAAGCAGCAGAGCTTTTAGAG 1200
Query 1202 AAGCTTCGTAGTGCATCCTGGGATGCGGCTGTTCAAGACATGGAAGACCTCAAGAGTTTC 1261
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AAGCTTTGTAGTGCATCTTGGGATGCGGCTGTTCAAGACATGGAAGACCTCAAGAGTTTC 1260
Query 1262 GCAAAGAACCAGGGTGCTGCAGAATCTGACAGTATGACTCATTGGGACACCACTTTCTGG 1321
|||||| |||||||||| ||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1261 GCAAAGGACCAGGGTGCAGCAGAATCTGACAGTTTGACTCACTGGGACACCACTTTCTGG 1320
Query 1322 AGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAGGAAGAACTACGTCCATACTTC 1381
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1321 AGTGAGAGGCTTCGTGAATCCAAATATGATATTAATGAGGAAGAACTACGTCCATACTTC 1380
Query 1382 TCACTGCCAAAGGTTATGGATGGACTTTTCAGTCTAGCTAAGACACTTTTTGGAATTGAT 1441
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1381 TCACTACCAAAGGTTATGGATGGACTTTTCAGTCTAGCTAAGACACTATTTGGAATTGAT 1440
Query 1442 ATTGAACCAGCAGATGGTTTAGCTCCGGTCTGGAACAATGATGTTCGGTTCTACCGCGTC 1501
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1441 ATTGAACCAGCAGATGGTTTAGCTCCGGTCTGGAACAACGATGTTCGGTTCTACCGCGTC 1500
Query 1502 AAAGATTCTTCTGGGAACCCAATCGCTTACTTTTACTTTGATCCATACTCTCGCCCGTCA 1561
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1501 AAAGATTCTTCTGGGAACCCAATCGCTTACTTTTACTTTGATCCATACTCTCGCCCTTCA 1560
Query 1562 GAGAAAAGAGGTGGCGCTTGGATGGATGAGGTTGTTTCCCGTAGCCGAGTCATGGCTCAG 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 GAGAAAAGAGGTGGCGCTTGGATGGATGAGGTTGTTTCCCGTAGCCGAGTCATGGCTCAG 1620
Query 1622 AAAGGCTCTTCTGTTAGGCTGCCTGTTGCACACATGGTCTGCAACCAAACTCCACCAGTA 1681
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1621 AAAGGCTCTTCTGTTAGGCTTCCTGTTGCACACATGGTCTGCAACCAAACTCCACCAGTA 1680
Query 1682 GGTGACAAGCCAAGCCTTATGACATTCCGTGAGGTAGAGACAGTATTTCATGAATTTGGA 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 GGTGACAAGCCAAGCCTTATGACATTCCGTGAGGTAGAGACAGTATTTCATGAATTTGGA 1740
Query 1742 CATGCTCTTCAGCACATGCTTACGAAGCAGGATGAGGGGCTAGTTGCTGGTATCCGAAAT 1801
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1741 CATGCTCTTCAGCACATGCTTACGAAGCAGGATGAAGGGCTAGTGGCTGGTATCCGAAAT 1800
Query 1802 ATCGAGTGGGACGCGGTTGAATTACCATCACAGTTTATGGAGAATTGGTGCTACCACAGG 1861
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 ATCGAGTGGGACGCAGTTGAATTACCATCACAGTTTATGGAGAATTGGTGCTACCACAGG 1860
Query 1862 GACACTTTAATGAGCATTGCTAAGCATTACGAAACAGGAGAAACACTCCCAGAGGAAGTA 1921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 GACACTTTAATGAGCATTGCTAAGCATTACGAAACAGGAGAAACACTCCCAGAGGAAGTA 1920
Query 1922 TACAAGAAACTCCTGGCCGCAAGAACATTCCGTGCAGGGTCCTTTAGTCTTCGTCAGTTG 1981
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1921 TACAAGAAACTCCTGGCCGCAAGAACATTCCGCGCAGGGTCCTTTAGTCTTCGTCAGTTG 1980
Query 1982 AAATTTGCCAGTGTTGATCTTGAGCTGCACACAAAATACGTACCAGGAGGACCAGAGTCC 2041
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1981 AAATTTGCCAGTGTTGATCTTGAGCTGCACACAAAATATGTACCAGGAGGACCAGAGTCC 2040
Query 2042 ATCTATGACGTAGATCAAAGGGTATCAGTAAAAACCCAAGTTATCCCTCCACTTCCTGAG 2101
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2041 ATCTATGACGTAGATCAAAGGGTATCAGTGAAAACCCAAGTTATCCCTCCACTTCCTGAG 2100
Query 2102 GATAGATTTCTCTGTAGCTTCAGTCACATCTTTGCCGGGGGATATGCAGCTGGATATTAC 2161
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2101 GATAGATTCCTCTGTAGCTTCAGTCACATCTTTGCCGGGGGATATGCAGCTGGATATTAC 2160
Query 2162 AGTTACAAGTGGGCAGAAGTTTTGTCTGCTGATGCATTTTCAGCATTTGAAGACGCTGGA 2221
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2161 AGTTACAAGTGGGCAGAAGTTTTGTCTGCAGATGCATTTTCAGCATTTGAAGACGCTGGA 2220
Query 2222 CTAGACGACATCAAGGCTGTTAAAGAAACAGGACAGAGATTCAGAAACACCATACTTGCA 2281
||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 2221 CTAGATGACATCAAGGCTGTGAAAGAAACAGGACAGAGATTCAGAGACACCATACTTGCA 2280
Query 2282 CTTGGAGGAGGGAA-AGCGCCTCTTAAGGTGTTTGTTGAGTTTAGAGGACGAGAACCTTC 2340
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2281 CTTGGAGGAGG-AAGAGCGCCTCTTAAGGTGTTTGTTGAGTTTAGAGGACGAGAACCTTC 2339
Query 2341 ACCCGAGCCTCTTCTCAGACACAATGGACTCTTGGCTGCCTCTGCTTCTGCTTAACTCTT 2400
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2340 ACCAGAGCCTCTTCTCAGACACAATGGACTCTTGGCTGCCTCTGCTTCTGCTTAACTCTT 2399
Query 2401 ATAT 2404
||||
Sbjct 2400 ATAT 2403
> Ahg487887 jgi|Araly1|487887|fgenesh2_kg.6__1021__AT5G10540.1
Length=2826
Score = 2455 bits (1329), Expect = 0.0
Identities = 1854/2104 (88%), Gaps = 50/2104 (2%)
Strand=Plus/Plus
Query 300 CTCTTTCCTCGAATCCTCTCTTGCAGGACTTCGATTTCCCTCCGTTTGATTCCGTTGATG 359
|||| |||||||||||||| |||||| | || || |||||||||||||| || |||||||
Sbjct 62 CTCTCTCCTCGAATCCTCTATTGCAGAATTTTGACTTCCCTCCGTTTGACTCTGTTGATG 121
Query 360 C-CAGTCATGTTC-GTCCTGGGATTCGTGCTCTATTGCAGCATCTCGAAGCTGAATTGGA 417
| || |||| || | ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 122 CTCA-CCATG-TCAGACCTGGGATTCGTGCTCTGTTGCAGCAGCTCGAAGCTGAATTGGA 179
Query 418 GGAGCTAGAGAAATCTGTGGAGCCAACATGGCCAAAACTGGTGGAACCATTAGAGAAAAT 477
| ||||||| ||| |||| ||||| ||||||||||||| ||||| ||||||||||| ||
Sbjct 180 GCAGCTAGAAAAAACTGTAGAGCCTTCATGGCCAAAACTAGTGGAGCCATTAGAGAAGAT 239
Query 478 CGTTGATCGGTTAACTGTTGTTTGGGGAATGATCAATCACCTTAAGGCTGTCAAGGACAC 537
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 TATTGATCGGTTATCTGTTGTTTGGGGAATGATCAATCATCTTAAGGCTGTCAAGGACAC 299
Query 538 ACCTGAGCTACGTGCTGCCATCGAAGACGTTCAGCCAGAGAAAGTGAAGTTCCAGCTCAG 597
|||||||| ||||||||||| ||||| |||||||||||||| ||||||| |||||||||
Sbjct 300 GCCTGAGCTTCGTGCTGCCATTGAAGAAGTTCAGCCAGAGAAGGTGAAGTACCAGCTCAG 359
Query 598 GTTGGGGCAAAGCAAGCCTATTTACAATGCCTTTAAAGCTATTCGTGAATCTCCTGATTG 657
|||||| || ||||| || ||||||||||| |||||||||||||| ||||| ||||| ||
Sbjct 360 GTTGGGACAGAGCAAACCCATTTACAATGCATTTAAAGCTATTCGAGAATCGCCTGACTG 419
Query 658 GTCATCGCTCAGTGAAGCTCGTCAACGCTTAGTAGAAGCTCAAATAAAGGAGGCGGTTCT 717
| | ||| || | | || || || | | ||||||||||||||||||||
Sbjct 420 G--A--AATCACTG-A-C-CG--AA-GC----T----CCGCAAATAAAGGAGGCGGTTCT 461
Query 718 CATTGGTATTGCTCTTGATGATGAAAAGAGAGAAGAGTTTAATAAAATTGAACAGGAACT 777
|| ||||||||||||||| || || ||||||||||| ||||| |||||||||||||||||
Sbjct 462 CAGTGGTATTGCTCTTGAAGACGACAAGAGAGAAGAATTTAACAAAATTGAACAGGAACT 521
Query 778 CGAAAAACTTTCCCATAAGTTTTCTGAGAATGTTTTGGATGCAACAAAGAAATTTGAAAA 837
||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 522 TGAAAAACTTTCTCATAAGTTTTCTGAGAATGTTTTGGACGCTACAAAGAAATTTGAAAA 581
Query 838 GTTGATAACAGACAAGAAAGAGATCGAGGGATTGCCTCCATCTGCTCTTGGGCTATTCGC 897
|||||||||||||||||||||||||||||| ||||| |||||||| ||||| | |||||
Sbjct 582 GTTGATAACAGACAAGAAAGAGATCGAGGGGTTGCCGCCATCTGCACTTGGATTGTTCGC 641
Query 898 ACAAGCAGCTGTC-TCCAAGGGCCATGAAAATGCAACTGCTGAGAATGGACCATGGATCA 956
||||||||||| | |||||||| |||||||||||||||||||| | |||||||||| |||
Sbjct 642 ACAAGCAGCTG-CTTCCAAGGGACATGAAAATGCAACTGCTGACACTGGACCATGGCTCA 700
Query 957 TTACACTGGATGCTCCTAGTTATCTTCCTGTCATGCAACATGCTAAAAACCGTGCTCTGC 1016
||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 701 TTACACTCGATGCTCCTAGTTATCTTCCCGTCATGCAACATGCCAAAAACCGAGCTCTGC 760
Query 1017 GTGAGGAAGTCTACCGTGCTTACCTATCTCGTGCCTCTTCTGGCGATTTGGATAATACGG 1076
| ||||||||||||||||||||| |||| ||||||||||| || ||||| |||||||| |
Sbjct 761 GCGAGGAAGTCTACCGTGCTTACTTATCCCGTGCCTCTTCGGGTGATTTAGATAATACAG 820
Query 1077 CAATTATTGACCAGATTTTGAAGCTTCGCTTGGAAAAAGCTAAGCTTCTTGGTTACA-AC 1135
||||||| ||||| || ||||||||||| |||||||| ||||||| ||||||||||| |
Sbjct 821 CAATTATCGACCAAATCTTGAAGCTTCGATTGGAAAAGGCTAAGCATCTTGGTTACAGA- 879
Query 1136 AATTACGCTGAGGTAAGCATGGCTATGAAAATGGCTACTGTTGAGAAAGCAGCA-GAGCT 1194
||||| ||||||||||||||||| | ||||||||||||||| |||||||||| | |||||
Sbjct 880 AATTATGCTGAGGTAAGCATGGCCACGAAAATGGCTACTGTAGAGAAAGCAG-ATGAGCT 938
Query 1195 TTTAGAGAAGCTTCGTAGTGCATCCTGGGATGCGGCTGTTCAAGACATGGAAGACCTCAA 1254
|||| |||||||| ||||| || |||||| |||||||||||||||| |||||||| ||
Sbjct 939 ACTAGAAAAGCTTCGCAGTGCTTCATGGGATCCGGCTGTTCAAGACATAGAAGACCTTAA 998
Query 1255 GAGTTTCGCAAAGAACCAGGGTGCTGCAGAATCTGACAGTATGACTCATTGGGACACCAC 1314
|||||| ||||||||||| |||||||||||| |||||||| ||||||| ||||||| |||
Sbjct 999 GAGTTTTGCAAAGAACCAAGGTGCTGCAGAAGCTGACAGTTTGACTCACTGGGACATCAC 1058
Query 1315 TTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAGGAAGAACTACGTCC 1374
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1059 TTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAGGAAGAACTGCGACC 1118
Query 1375 ATACTTCTCACTGCCAAAGGTTATGGATGGACTT-TTCAGTCTAGCTAAGACACTTTTTG 1433
|||||||||||||||||||||||||||| | || ||| |||||||||||||||| ||||
Sbjct 1119 TTACTTCTCACTGCCAAAGGTTATGGATGCA-TTATTCGGTCTAGCTAAGACACTATTTG 1177
Query 1434 GAATTGATATTGAACCAGCAGATGGTTTAGCTCCGGTCTGGAACAATGATGTTCGGTTCT 1493
|||||||| ||| |||||||||||| |||||||||||||||||| |||||| ||||||
Sbjct 1178 GAATTGATGTTGTGCCAGCAGATGGTGTAGCTCCGGTCTGGAACAGCGATGTTAGGTTCT 1237
Query 1494 ACCGCGTCAAAGATTCTTCTGGGAACCCAA-TCGCTTACTTT-TACTTTGATCCATACTC 1551
|| | ||||||||||||||||| || |||| | ||||| ||| ||||||||||| |||||
Sbjct 1238 ACTGTGTCAAAGATTCTTCTGGAAATCCAACT-GCTTA-TTTCTACTTTGATCCCTACTC 1295
Query 1552 TCGCCCGTCAGAGAAA-AGAGGTGGCGCTTGGATGGATGAGGTTGTTTCCCGTAGCCGAG 1610
||| || ||||| ||| |||| ||||||||||||||||| ||| |||| ||||||||||
Sbjct 1296 TCGTCCTTCAGA-AAAGAGAGACGGCGCTTGGATGGATGAAGTTTTTTCTCGTAGCCGAG 1354
Query 1611 TCATGGCTCAGAAAGGCTCTTCTGTTAGGCTGCCTGTTGCACACATGGTCTGCAACCAAA 1670
||||||| ||||| || || || |||||||| |||||||| || ||||||||||||||||
Sbjct 1355 TCATGGCCCAGAAGGGTTCCTCCGTTAGGCTCCCTGTTGCTCAAATGGTCTGCAACCAAA 1414
Query 1671 CTCCACCAGTAGGTGACAAGCCAAGCCTTATGACATTCCGTGAGGTAGAGACAGTATTTC 1730
|||||||||| ||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 1415 CTCCACCAGTTGGTGACAAGCCAAGCCTTATGACATTCCGTGAGGTAGAGACTGTGTTCC 1474
Query 1731 ATGAATTTGGACATGCTCTTCAGCACATGCTTACGAA-GCAGGATGAGGGGCTAGTTGCT 1789
|||||||||| |||||||||||||| |||||||| || | || ||||||||||||| |||
Sbjct 1475 ATGAATTTGGCCATGCTCTTCAGCATATGCTTACCAAAGAAG-ATGAGGGGCTAGTGGCT 1533
Query 1790 GGTATCCGAAATATCGAGTGGGACGCGGTTGAATTACCATCACAGTTTATGGAGAATTGG 1849
||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |||
Sbjct 1534 GGTATCCGAAATATCGAGTGGGATGCAGTTGAATTACCTTCACAGTTTATGGAGAACTGG 1593
Query 1850 TGCTACCACAGGGACACTTTAATGAGCATTGCTAAGCATTA-CGAAACAGGAGAAACACT 1908
|||||||||||||| || ||||||||||||||||||||||| | ||||||||||||| ||
Sbjct 1594 TGCTACCACAGGGATACCTTAATGAGCATTGCTAAGCATTATC-AAACAGGAGAAACTCT 1652
Query 1909 -CCCAGAGGAA-GTATACAAGAAACTCCTGGCCGCAAGAACATTCCGTGCAGGGTCCTTT 1966
||| ||| || ||||||||||| || ||||| |||||||||||||||||||||||| ||
Sbjct 1653 TCCC-GAG-AATGTATACAAGAAGCTACTGGCTGCAAGAACATTCCGTGCAGGGTCCCTT 1710
Query 1967 AGTCTTCGTCAGTTGAAATTTGCCAGTGTTGATCTTGAGCTGCACACAAAATACGTACCA 2026
|||||||| |||||||| ||||| | |||||||| |||||||||||||||||| | |||
Sbjct 1711 AGTCTTCGCCAGTTGAAGTTTGCTACAGTTGATCTGGAGCTGCACACAAAATACATGCCA 1770
Query 2027 GGAGG-ACCAGAGTCCATCTATGACGTAGATCAAAGGGTATC-AGTAAAAACCCAAGTTA 2084
|| || || |||| ||||||| || || ||||||||||| || | ||||||| ||||| |
Sbjct 1771 GGTGGGAC-AGAGACCATCTACGATGTTGATCAAAGGGTGTCCA-TAAAAACACAAGTGA 1828
Query 2085 TCCCTCCACTTCCTGAGGATAGATTTCTCTGTAGCTTCAGTCACATCTTTGCCGGGGGAT 2144
|||||||||||||||| |||||||| ||||||||||||||||| || ||||| || || |
Sbjct 1829 TCCCTCCACTTCCTGAAGATAGATTCCTCTGTAGCTTCAGTCATATATTTGCAGGTGGTT 1888
Query 2145 ATGCAGCTGGATATTACAGTTACAAGTGGGCAGAAGTTTTGTCTGCTGATGCATTTTCAG 2204
||||||||||||| ||||||||||||||||| || ||||||||||| ||||| |||||||
Sbjct 1889 ATGCAGCTGGATACTACAGTTACAAGTGGGCGGAGGTTTTGTCTGCAGATGCGTTTTCAG 1948
Query 2205 CATTTGAAGACGCTGGACTAGACGACATCAAGGCTGTTAAAGAAACAGGACAGAGATTCA 2264
| |||||||| ||||| | || ||||||||||||||||||||||||||||| |||||||
Sbjct 1949 CTTTTGAAGATGCTGGGTTGGATGACATCAAGGCTGTTAAAGAAACAGGACAAAGATTCA 2008
Query 2265 GAAACACCATACTTGCACTTGGAGGAGGGAAAGCGCCTCTTAAGGTGTTTGTTGAGTTTA 2324
||||||| ||||| || || |||||||| ||||| ||||| || |||||||| ||||| |
Sbjct 2009 GAAACACAATACTCGCTCTGGGAGGAGGAAAAGCACCTCTAAAAGTGTTTGTGGAGTTCA 2068
Query 2325 GAGGACGAGAACCTTCACCC-GAGCCTCTTCTCAGACACAATGGACTCTTGGCTGCCTCT 2383
|||||||||||||||| ||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 2069 GAGGACGAGAACCTTC-CCCAGAGCCTCTGCTCAGACACAATGGACTCTTGGCTGCTTCT 2127
Query 2384 GCTT 2387
||||
Sbjct 2128 GCTT 2131
> Ahg497269 jgi|Araly1|497269|fgenesh2_kg.112__1__AT5G65620.1
Length=1958
Score = 2250 bits (1218), Expect = 0.0
Identities = 1360/1426 (95%), Gaps = 19/1426 (1%)
Strand=Plus/Plus
Query 2 ACGCTTGTAATAGCAAACATGTTAATGGCGACTCCAACGTCTCGAGCCTCTCTCAATCTT 61
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ACGCTTGTAATAGCAAACATGTTAATGGCGACTCCAACGTCTCGAGCGTCTCTCAATCTT 60
Query 62 CTTCGTCGATCGCCAAAACCCAAATATTTCTCATCTTCTTCTTGTCATTTTCGTCCCTCA 121
|||||||| || ||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 61 CTTCGTCGTTCACCAAAACCCAAATATTTCTCATCTTCTTCTTGTCAATTTGGTCCCTCA 120
Query 122 ACTTTTCGTAAATCATATCCTTGCCCCATCTGGtcttcttctttctctttttgtctccct 181
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 ACTTTTCGAAAATCATATCCTTGCCCCATCTGGTCTTCTTCTTTCTCTTTCTGTCTCCCT 180
Query 182 cctcctagatccaccacttccacctctctctcctcctcctctttccgccccttctcctct 241
|||||||||||||| || ||||||||||||||||||| | | ||||| ||||||||||||
Sbjct 181 CCTCCTAGATCCACTACCTCCACCTCTCTCTCCTCCT-C-C-TTCCGTCCCTTCTCCTCT 237
Query 242 cctccgtccatgtcttccgccgccgctgccgccgTGGAATCCGTCGTCTCCGACGAGACT 301
|||||||| |||||||||||||||||||||||||| || || || ||||||| ||||||
Sbjct 238 CCTCCGTCTATGTCTTCCGCCGCCGCTGCCGCCGTAGACTCTGTTATCTCCGAGGAGACT 297
Query 302 CTTTCCTCGAATCCTCTCTTGCAGGACTTCGATTTCCCTCCGTTTGATTCCGTTGATGCC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CTTTCCTCGAATCCTCTCTTGCAGGACTTCGATTTCCCTCCGTTTGATTCCGTTGATGCC 357
Query 362 AGTCATGTTCGTCCTGGGATTCGTGCTCTATTGCAGCATCTCGAAGCTGAATTGGAGGAG 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGTCATGTTCGTCCTGGGATTCGTGCTCTATTGCAGCATCTCGAAGCTGAATTGGAGGAG 417
Query 422 CTAGAGAAATCTGTGGAGCCAACATGGCCAAAACTGGTGGAACCATTAGAGAAAATCGTT 481
||||||||||||||||||||| | |||||||| ||||| ||||| |||||||||||||||
Sbjct 418 CTAGAGAAATCTGTGGAGCCATCGTGGCCAAATCTGGTTGAACCTTTAGAGAAAATCGTT 477
Query 482 GATCGGTTAACTGTTGTTTGGGGAATGATCAATCACCTTAAGGCTGTCAAGGACACACCT 541
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 478 GATCGGTTAACTGTTGTTTGGGGAATGATCAATCACCTTAAAGCTGTTAAGGACACACCT 537
Query 542 GAGCTACGTGCTGCCATCGAAGACGTTCAGCCAGAGAAAGTGAAGTTCCAGCTCAGGTTG 601
||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 538 GAGCTTCGTGCTGCCATTGAAGACGTTCAGCCAGAGAAGGTGAAGTTCCAGCTCAGATTG 597
Query 602 GGGCAAAGCAAGCCTATTTACAATGCCTTTAAAGCTATTCGTGAATCTCCTGATTGGTCA 661
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GGACAAAGCAAGCCTATTTACAATGCCTTTAAAGCTATTCGTGAATCTCCTGATTGGTCA 657
Query 662 TCGCTCAGTGAAGCTCGTCAACGCTTAGT---A-G----A-------AGCTCAAATAAAG 706
|| |||||||||||||||||||||||||| | | | |||||||||||||
Sbjct 658 TCTCTCAGTGAAGCTCGTCAACGCTTAGTAGAAGGCAATATGTTTTCAGCTCAAATAAAG 717
Query 707 GAGGCGGTTCTCATTGGTATTGCTCTTGATGATGAAAAGAGAGAAGAGTTTAATAAAATT 766
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 718 GAGGCGGTTCTCATAGGTATTGCTCTTGATGATGAAAAGAGAGAAGAGTTTAACAAAATT 777
Query 767 GAACAGGAACTCGAAAAACTTTCCCATAAGTTTTCTGAGAATGTTTTGGATGCAACAAAG 826
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 778 GAACAGGAACTCGAAAAACTTTCCCATAAGTTTTCTGAGAATGTTTTGGATGCTACAAAG 837
Query 827 AAATTTGAAAAGTTGATAACAGACAAGAAAGAGATCGAGGGATTGCCTCCATCTGCTCTT 886
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AAATTTGAAAAGTTGATTACAGACAAGAAAGAGATCGAGGGATTGCCTCCATCTGCTCTC 897
Query 887 GGGCTATTCGCACAAGCAGCTGTCTCCAAGGGCCATGAAAATGCAACTGCTGAGAATGGA 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GGGCTATTCGCACAAGCAGCTGTCTCCAAGGGCCATGAAAATGCAACTGCTGAGAATGGA 957
Query 947 CCATGGATCATTACACTGGATGCTCCTAGTTATCTTCCTGTCATGCAACATGCTAAAAAC 1006
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 958 CCATGGATCATTACACTAGATGCTCCTAGTTATCTTCCTGTCATGCAACATGCTAAGAAC 1017
Query 1007 CGTGCTCTGCGTGAGGAAGTCTACCGTGCTTACCTATCTCGTGCCTCTTCTGGCGATTTG 1066
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CGTGCTCTGCGTGAGGAAGTTTACCGTGCTTACCTATCTCGTGCCTCTTCTGGCGATTTG 1077
Query 1067 GATAATACGGCAATTATTGACCAGATTTTGAAGCTTCGCTTGGAAAAAGCTAAGCTTCTT 1126
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1078 GATAATACAGCAATTATCGACCAGATCTTGAAGCTTCGCTTGGAAAAAGCTAAGCTTCTT 1137
Query 1127 GGTTACAACAATTACGCTGAGGTAAGCATGGCTATGAAAATGGCTACTGTTGAGAAAGCA 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GGTTACAACAATTACGCTGAGGTAAGCATGGCTATGAAAATGGCTACTGTTGAGAAAGCA 1197
Query 1187 GCAGAGCTTTTAGAGAAGCTTCGTAGTGCATCCTGGGATGCGGCTGTTCAAGACATGGAA 1246
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1198 GCAGAGCTTTTAGAGAAGCTTCGTAGTGCATCTTGGGATGCGGCTGTTCAAGACATGGAA 1257
Query 1247 GACCTCAAGAGTTTCGCAAAGAACCAGGGTGCTGCAGAATCTGACAGTATGACTCATTGG 1306
||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| |||
Sbjct 1258 GACCTCAAGAGTTTCGCAAAGGACCAGGGTGCAGCAGAATCTGACAGTTTGACTCACTGG 1317
Query 1307 GACACCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAGGAAGAA 1366
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1318 GACACCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATATGATATTAATGAGGAAGAA 1377
Query 1367 CTACGTCCATACTTCTCACTGCCAAAGGTTATGGATGGACTTTTCA 1412
||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1378 CTACGTCCATACTTCTCACTGCCAAAGGTTATGGATG-ACTTTTCA 1422
Score = 789 bits (427), Expect = 0.0
Identities = 511/548 (93%), Gaps = 20/548 (4%)
Strand=Plus/Plus
Query 1975 TCAGTTGAAATTTGCCAGTGTTGATCTTGAGCTGCACACAAAATACGTACCAGGAGGACC 2034
||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| |
Sbjct 1420 TCA-TTGAAATTTGCTAGTGTGGATCTTGAGCTGCACACAAAATATGTACCAGGAGGAGC 1478
Query 2035 AGAGTCCATCTATGACGTAGATCAAAGGGTATCAGTAAAAACCCAAGTTATCCCTCCACT 2094
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1479 AGAGTCCATCTATGACGTAGATCAAAGGGTATCAGTGAAAACCCAAGTTATCCCTCCACT 1538
Query 2095 TCCTGAGGATAGATTTCTCTGTAGCTTCAGTCACATCTTTGCCGGGGGATATGCAGCTGG 2154
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 TCCTGAGGATAGATTCCTCTGTAGCTTCAGTCACATCTTTGCCGGGGGATATGCAGCTGG 1598
Query 2155 ATATTACAGTTACAAGTGGGCAGAAGTTTTGTCTGCTGATGCATTTTCAGCATTTGAAGA 2214
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1599 ATATTACAGTTACAAGTGGGCAGAAGTTTTGTCTGCAGATGCATTTTCAGCATTTGAAGA 1658
Query 2215 CGCTGGACTAGACGACATCAAGGCTGTTAAAGAAACAGGACAGAGATTCAGAAACACCAT 2274
|||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1659 CGCTGGACTAGATGACATCAAGGCTGTGAAAGAAACAGGACAGAGATTCAGAGACACCAT 1718
Query 2275 ACTTGCACTTGGAGGAGGGAA-AGCGCCTCTTAAGGTGTTTGTTGAGTTTAGAGGACGAG 2333
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1719 ACTTGCACTTGGAGGAGG-AAGAGCGCCTCTTAAGGTGTTTGTTGAGTTTAGAGGACGAG 1777
Query 2334 AACCTTCACCCGAGCCTCTTCTCAGACACAATGGACTCTTGGCTGCCTCTGCTTCTGCTT 2393
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1778 AACCTTCACCAGAGCCTCTTCTCAGACACAATGGACTCTTGGCTGCCTCTGCTTCTGCTT 1837
Query 2394 AACTCTTATATAATCCTCACAACATTTGGAAACTTTGA-AAGACATTTATA-A-GATGGA 2450
||||||||||| | ||||||||||||| |||||| | || ||||||||| | |||| |
Sbjct 1838 AACTCTTATAT--T--TCACAACATTTGGCAACTTT-ATAA-ACATTTATATAAGATGAA 1891
Query 2451 AAATCAACTTTTCTTTTTTAATATGCCAACCATTTACATCT---AA-TAC-A--TTGCAT 2503
||| | ||||| |||||||||||| ||||||||||||||| || ||| | ||||||
Sbjct 1892 AAAAGATCTTTT-TTTTTTAATATGGCAACCATTTACATCTCTCAACTACTACATTGCAT 1950
Query 2504 TGATTTCT 2511
||||||||
Sbjct 1951 TGATTTCT 1958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94768529560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5