BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65630.1
Length=2444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951412 jgi|Araly1|951412|scaffold_803299.1 2645 0.0
Ahg497270 jgi|Araly1|497270|fgenesh2_kg.112__2__AT5G65630.1 2034 0.0
> Ahg951412 jgi|Araly1|951412|scaffold_803299.1
Length=1774
Score = 2645 bits (1432), Expect = 0.0
Identities = 1693/1813 (93%), Gaps = 42/1813 (2%)
Strand=Plus/Plus
Query 173 GAAATGACCTTGCGATTCGTATGGCTCCGGCTGTTTTCGCTACCTTAAACGAACCGTCGT 232
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1 GAAATGACCTTGCGATTCGTATGGCTCCGGCTGTTTTGGGTACCTTAAACGAACCGTCGT 60
Query 233 ACCAGGAACAATGCGGCGCCGTTTTTATGAGGAAATTTACAAACCAATCCGTCACCGAAA 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACCAGGAACAATGCGGCGCCGTTTTTATGAGGAAATTTACAAACCAATCCGTCACCGAAA 120
Query 293 ACACCAATAACCTTCCGCTCTTCAACCCTAACCCTAACCCTAATTTCGAAAGGAGCAATT 352
|||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 121 ACACCAATAACCTTCCTCTCGTCAACCCTAACCCTAACCCTAATTTCGACAGGAGCAATT 180
Query 353 CGAGCAAGCAGTGCGATGACTCGTCGGAATTTGGAAGCTATGCTACTTTTAATC-TCGCT 411
||||||| |||| ||||| |||||||||||||| ||||| ||||||||||| | |||||
Sbjct 181 CGAGCAAACAGTTTGATGATTCGTCGGAATTTGGGAGCTACGCTACTTTTAA-CATCGCT 239
Query 412 GGGTACACCTCAAGTCAGCTCAGGGAGCTTAAGAAGCGCTTT-ACCTCAGAGCTCAAGCA 470
||||||||||||| ||||||||||||||| |||||||| ||| ||||| |||||| ||||
Sbjct 240 GGGTACACCTCAAATCAGCTCAGGGAGCTGAAGAAGCG-TTTCACCTCTGAGCTCGAGCA 298
Query 471 GATTCGGATCCTGAGAGAACGGATCGAGTCAGGGACGTTCGAGACTCAGCAAGGTTATAC 530
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 299 GATTCGGATCCTGAGAGAACGGATCGAGTCAGGGACGTTCGAGACTCAGCAAGCTTATAC 358
Query 531 TATCCCAGAGGTACCCGCCGTTCGATCAGCTCCGTTGAATAACTTCACCGGTGAAAAGAA 590
|||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 359 TATCCCGGAGGTACCCGCCGTTCGATCAGCTCCGTTGAATAGTTTCGCCGGTGAAAAGAA 418
Query 591 TGACCTTGGACCGAAGAAGAAGAAACAGAAGAAAAATGTGTCAGGTCTCAAGCGAAGCAA 650
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 419 TGACCTTGGACCGAAGAAGAAGAAGCAGAAGAAAAATGTGTCAGGTCTCAAGCGAGGCAA 478
Query 651 TCAATTTGGTCCGTCGGATCCGGAGTCGGAGAAATTATTGGCCGGTATGTTGAATACCTG 710
|||||||| | | ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 479 TCAATTTGCTGCTTCGGATCCGGAGTCGGAGAAATTATTGGCTGGTATGTTGAATACTTG 538
Query 711 TAGTCAGATCTTGGTGAAGCTAATGAAGCATAAATGGGCGTGGGTGTTCAACACTCCTGT 770
| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGGTCAAATCTTGGTGAAGCTGATGAAGCATAAATGGGCGTGGGTGTTCAACACTCCTGT 598
Query 771 TGATGTGGTTGGTTTAGGGCTTCATGATTATCATCAGGTTGTGAAGAAACCTATGGATCT 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGATGTGGTTGGTTTAGGGCTTCATGATTATCATCAGGTTGTGAAGAAACCTATGGATCT 658
Query 831 GGGTACAGTGAAATTGAATCTTGATAAAGGATTCTACGTTTCGCCGATTGATTTTGCTAC 890
|||||| || || ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 659 GGGTACGGTTAAGTTGAATCTTGATAAAGGGTTTTACGTTTCGCCGATTGATTTTGCTAC 718
Query 891 TGATGTCAGATTGACATTCGACAATGCAATGACGTATAATCCAAAGGGACAAGATGTGTA 950
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 719 TGATGTCAGATTGACATTCAACAATGCAATGACGTATAATCCAAAGGGTCAAGATGTGTA 778
Query 951 TTTTATGGCTGATAAGCTTTTGGATCATTTCGATGGAATGTTCAATCCTGCTTTTAAGAA 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTTTATGGCTGATAAGCTTTTGGATCATTTCGATGGAATGTTCAATCCTGCTTTTAAGAA 838
Query 1011 GTTTGAGGCTCAGCAGCTTAAACTCACTGGTTCTTCATCTCGTCCTGAACCTGACTTCAA 1070
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 839 GTTTGAGGCTCAGCAGCTTAAACTCACTGGTTCTTCATCTCGTCTTGAACCTGAG----- 893
Query 1071 ACCTGACTTCAAGCAAAGACAGTGGAATCAGAATCCGCCAATGGTGGCGAATCCTAGGAA 1130
| | |||||||||||| |||||||||||| ||||||||||||| |||||||||||
Sbjct 894 ----G--T-CAAGCAAAGACATTGGAATCAGAATTCGCCAATGGTGGCAAATCCTAGGAA 946
Query 1131 AGGAACCGAACAAATATCTATTGCGAAGAAGCTTGATTCAGTGAAGCCGCCACAACCTAC 1190
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct 947 AGGAACCGAACAAATATCTATCGCGAAGAAGCTTGATTCAGTGAAGCCGCCACTACCTGC 1006
Query 1191 ATTGCCTCCTCAATTAGTCGAGCCGTCACGCGTTCAATCTCCTTCTCCTCCTCCCCCTCC 1250
||||||||||||||||||||||||||| || ||||||||||||||||| || || |||||
Sbjct 1007 ATTGCCTCCTCAATTAGTCGAGCCGTCGCGTGTTCAATCTCCTTCTCCACCACCTCCTCC 1066
Query 1251 TCCGGTGATACAGCCTGAACTTCCGCAGCCTCAACCACCACCTCCACAGCTTGAAATTGA 1310
||| | | | | || || | ||||||||| ||| ||||| | |||||
Sbjct 1067 TCC--TCCTCCGG--TGG--TT--G-AGCCTCAACT------TCCGCAGCTGGTTATTGA 1111
Query 1311 AGTAGAAGCACCTCCTGATGTGAGTGAAGTGTCAAAAGGAAGGAAGGGGAAGTTGCCGAA 1370
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1112 AGTAGAAGCACCTCCTGATGTGAGTGACGTGACAAAAGGAAGGAAGGGGAAGTTGCCGAA 1171
Query 1371 GCCTAAGGCTAAGGATCCAAATAAGAGGTTGATGACGATGGAAGAGAAGTCAAAGCTTGG 1430
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1172 GCCTAAGGCTAAGGATCCAAATAAGAGGTTGATGACAATGGAAGAGAAGTCAAAGCTTGG 1231
Query 1431 TATGAATCTACAAGACTTGCCTCCTGAGAAGCTTGGTCAGTTGCTTCAGATTCTCAGGAA 1490
|||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1232 TATGAATCTACAAGACTTACCTCCTGAGAAGCTTGGACAGTTGGTTCAGATTCTCAGGAA 1291
Query 1491 GAGAAACGGACATTTAGCTCAAGATGGGGACGAAATTGAGCTGGATATAGAAGCTGTCGA 1550
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1292 GAGAAACGGACATTTAGCTCAAGATGGTGACGAAATTGAGCTAGATATAGAAGCTGTCGA 1351
Query 1551 CAATGAGACTCTATGGGAGCTTGATCGTTTTGTGACGAACTACAAGAAGATGGCTAGCAA 1610
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1352 CAACGAGACTCTATGGGAGCTTGATCGTTTTGTGACGAATTACAAGAAGATGGCTAGCAA 1411
Query 1611 AATCAAGCGCCAAGGGTTTATCAGGAACGTGTCAACTCCACCTAGGAACATGGCTTCGGT 1670
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1412 AATCAAGCGCCAAGGGTTTATCAGGAACGTATCAACTCCACCTAGGAACATGACTTCGGT 1471
Query 1671 AGCAGAAATGGGTAGTGCGGAGAAGAGAACAAGGAGAGGAGATGCAGGGGAAGAGGATGT 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 AGCAGAAATGGGTAGTGCGGAGAAGAGAACAAGGAGAGGAGATGCAGGGGAAGAGGATGT 1531
Query 1731 TGACATTGGAGAGGACATACCAATCGAAGATTATCCATCTGTAGAGATCGAAAGAGATGG 1790
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1532 AGACATTGGAGAAGACATACCAATCGAAGATTACCCATCTGTAGAGATCGAAAGAGATGG 1591
Query 1791 TACTGCAGTTGCAGCTGCTGCTAGTAGTGGTTCTAGTTCTTCAGGCAGTTCCAGTTCTAG 1850
|||||||||||||| | | ||| | ||| ||||||||||||||||||||||||||||
Sbjct 1592 TACTGCAGTTGCAG--G-T---AGT-G-GGT-CTAGTTCTTCAGGCAGTTCCAGTTCTAG 1642
Query 1851 TGGTGGTAGTTCCTCGTCTAGTGATTCAGGGTCAGGTGGGAGTTCATCAGGTAGTGATTC 1910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 TGGTGGTAGTTCCTCGTCTAGTGATTCAGGGTCAGGTGGGAGTTCATCAGGTAGTGATTC 1702
Query 1911 TGATGCAGATAGTGTTCAATCGCCATTTGTGGAAGCAAAAGAAGCCCAATGTTAAAATCA 1970
||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1703 TGATGCAGATAGTGTTCAATCGCCATTTGTGGAAGCAAAAGAAGCTCAATGATAGAATCA 1762
Query 1971 TTTGG-GAATTTA 1982
||||| || ||||
Sbjct 1763 TTTGGTGA-TTTA 1774
> Ahg497270 jgi|Araly1|497270|fgenesh2_kg.112__2__AT5G65630.1
Length=2191
Score = 2034 bits (1101), Expect = 0.0
Identities = 1339/1448 (92%), Gaps = 40/1448 (3%)
Strand=Plus/Plus
Query 76 ATCGCCGGAATTTTCGCCGGTGATGTAATTTTCCCGCGCCTTTTTTGGGAGGT---GAA- 131
||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 23 ATCGCCGGAATTTTCGCCGGTGATGTAATTTTCCCGC-CCTTTTTT-GGAGGTAAAAAAG 80
Query 132 tttt-tttttCTTCTAAAAGCTCGAGAAGAGTGAAAACCCCAGAAATGACCTTGCGATTC 190
|||| |||||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 TTTTGTTTTTC-TC-AGAAGCTCGAGAAGAGTGAAAACCCCAGAAATGACCTTGCGATTC 138
Query 191 GTATGGCTCCGGCTGTTTTCGCTACCTTAAACGAACCGTCGTACCAGGAACAATGCGGCG 250
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 139 GTATGGCTCCGGCTGTTTTGGGTACCTTAAACGAACCGTCGTACCAGGAACAATGCGGCG 198
Query 251 CCGTTTTTATGAGGAAATTTACAAACCAATCCGTCACCGAAAACACCAATAACCTTCCGC 310
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 199 CCGTTTTTATGAGGAAATTTACAAACCAATCCGTCACCGAAAACACCAATAACCTTCCTC 258
Query 311 TCTTCAACCCTAACCCTAACCCTAATTTCGAAAGGAGCAATTCGAGCAAGCAGTGCGATG 370
||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||
Sbjct 259 TCTTCAACCCTAACCCTAACCCTAATTTCGACAGGAGCAATTCGAGCAATCAGTTCGATG 318
Query 371 ACTCGTCGGAATTTGGAAGCTATGCTACTTTTAATCTCGCTGGGTACACCTCAAGTCAGC 430
| |||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||
Sbjct 319 ATTCGTCGGAATTTGGAAGCTACGCTACTTTTAATATCGCTGGGTACACCTCAAATCAGC 378
Query 431 TCAGGGAGCTTAAGAAGCGCTTT-ACCTCAGAGCTCAAGCAGATTCGGATCCTGAGAGAA 489
|||||||||| |||||||| ||| ||||| |||||| |||||||||||||||||||||||
Sbjct 379 TCAGGGAGCTGAAGAAGCG-TTTCACCTCTGAGCTCGAGCAGATTCGGATCCTGAGAGAA 437
Query 490 CGGATCGAGTCAGGGACGTTCGAGACTCAGCAAGGTTATACTATCCCAGAGGTACCCGCC 549
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 438 CGGATCGAGTCAGGGACGTTCGAGACTCAGCAAGCTTATACTATCCCGGAGGTACCCGCC 497
Query 550 GTTCGATCAGCTCCGTTGAATAACTTCACCGGTGAAAAGAATGACCTTGGACCGAAGAAG 609
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 498 GTTCGATCAGCTCCGTTGAATAGTTTCGCCGGTGAAAAGAATGACCTTGGACCGAAGAAG 557
Query 610 AAGAAACAGAAGAAAAATGTGTCAGGTCTCAAGCGAAGCAATCAATTTGGTCCGTCGGAT 669
||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 558 AAGAAGCAGAAGAAAAATGTGTCAGGTCTCAAGCGAAGCAATCAATTTACTGATTCGGAT 617
Query 670 CCGGAGTCGGAGAAATTATTGGCCGGTATGTTGAATACCTGTAGTCAGATCTTGGTGAAG 729
||||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||
Sbjct 618 CCGGAGTCGGAGAAATTATTGGCTGGTATGTTGAATACTTGTGGTCAAATCTTGGTGAAG 677
Query 730 CTAATGAAGCATAAATGGGCGTGGGTGTTCAACACTCCTGTTGATGTGGTTGGTTTAGGG 789
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 CTGATGAAGCATAAATGGGCGTGGGTGTTCAACACTCCTGTTGATGTGGTTGGTTTAGGG 737
Query 790 CTTCATGATTATCATCAGGTTGTGAAGAAACCTATGGATCTGGGTACAGTGAAATTGAAT 849
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 738 CTTCATGATTATCATCAGGTTGTGAAGAAACCTATGGATCTGGGTACGGTTAAGTTGAAT 797
Query 850 CTTGATAAAGGATTCTACGTTTCGCCGATTGATTTTGCTACTGATGTCAGATTGACATTC 909
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 CTTGATAAAGGGTTTTACGTTTCGCCGATTGATTTTGCTACTGATGTCAGATTGACATTC 857
Query 910 GACAATGCAATGACGTATAATCCAAAGGGACAAGATGTGTATTTTATGGCTGATAAGCTT 969
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 858 AACAATGCAATGACGTATAATCCAAAGGGTCAAGATGTGTATTTTATGGCTGATAAGCTT 917
Query 970 TTGGATCATTTCGATGGAATGTTCAATCCTGCTTTTAAGAAGTTTGAGGCTCAGCAGCTT 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 TTGGATCATTTCGATGGAATGTTCAATCCTGCTTTTAAGAAGTTTGAGGCTCAGCAGCTT 977
Query 1030 AAACTCACTGGTTCTTCATCTCGTCCTGAACCTGACTTCAAACCTGACTTCAAGCAAAGA 1089
||||||||||||||||||||||||| ||||||||| | | ||||||||||
Sbjct 978 AAACTCACTGGTTCTTCATCTCGTCTTGAACCTGAG---------G--T-CAAGCAAAGA 1025
Query 1090 CAGTGGAATCAGAATCCGCCAATGGTGGCGAATCCTAGGAAAGGAACCGAACAAATATCT 1149
|| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1026 CATTGGAATCAGAATTCGCCAATGGTGGCAAATCCTAGGAAAGGAACCGAACAAATATCT 1085
Query 1150 ATTGCGAAGAAGCTTGATTCAGTGAAGCCGCCACAACCTACATTGCCTCCTCAATTAGTC 1209
|| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1086 ATCGCGAAGAAGCTTGATTCAGTGAAGCCGCCACTACCTGCATTGCCTCCTCAATTAGTC 1145
Query 1210 GAGCCGTCACGCGTTCAATCTCCTTCTCCTCCTCCCCCTCCTCCGGTGATACAGCCTGAA 1269
|||||||| || ||||||||||||||||| || || |||||||| | | | | ||
Sbjct 1146 GAGCCGTCGCGTGTTCAATCTCCTTCTCCACCACCTCCTCCTCC--TCCTCCGG--TGG- 1200
Query 1270 CTTCCGCAGCCTCAACCACCACCTCCACAGCTTGAAATTGAAGTAGAAGCACCTCCTGAT 1329
|| | ||||||||| ||| ||||| | ||||||||||||||||||||||||
Sbjct 1201 -TT--G-AGCCTCAACT------TCCGCAGCTGGTTATTGAAGTAGAAGCACCTCCTGAT 1250
Query 1330 GTGAGTGAAGTGTCAAAAGGAAGGAAGGGGAAGTTGCCGAAGCCTAAGGCTAAGGATCCA 1389
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GTGAGTGACGTGACAAAAGGAAGGAAGGGGAAGTTGCCGAAGCCTAAGGCTAAGGATCCA 1310
Query 1390 AATAAGAGGTTGATGACGATGGAAG-AGAAGTCAAAGCTTGGTATGAATCTACAAGACTT 1448
||||||||||||||||| || || | ||||||||||||||||||||||||||||||||||
Sbjct 1311 AATAAGAGGTTGATGACAATCGA-GCAGAAGTCAAAGCTTGGTATGAATCTACAAGACTT 1369
Query 1449 GCCTCCTGAGAAGCTTGGTCAGTTGCTTCAGATTCTCAGGAAGAGAAACGGACATTTAGC 1508
||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1370 ACCTCCTGAGAAGCTTGGACAGTTGGTTCAGATTCTCAGGAAGAGAAACGGTCATTTAGC 1429
Query 1509 TCAAGATG 1516
||||||||
Sbjct 1430 TCAAGATG 1437
Score = 612 bits (331), Expect = 4e-174
Identities = 385/409 (94%), Gaps = 12/409 (3%)
Strand=Plus/Plus
Query 1607 GCAAAATCAAGCGCCAAGGGTTTATCAGGAACGTGTCAACT-CCACCTAGGAACATGGCT 1665
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1437 GCAAAATCAAGCGGCAAGGGTTTATCAGGAACGTGTCAACTCCCACCTAGGAACATGACT 1496
Query 1666 TCGGTAGCAGAAATGGGTAGTGCGGAGAAGAGAACAAGGAGAGGAGATGCAGGGGAAGAG 1725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TCGGTAGCAGAAATGGGTAGTGCGGAGAAGAGAACAAGGAGAGGAGATGCAGGGGAAGAG 1556
Query 1726 GATGTTGACATTGGAGAGGACATACCAATCGAAGATTATCCATCTGTAGAGATCGAAAGA 1785
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1557 GATGTAGACATTGGAGAAGACATACCAATCGAAGATTACCCATCTGTAGAGATCGAAAGA 1616
Query 1786 GATGGTACTGCAGTTGCAGCTGCTGCTAGTAGTGGTTCTAGTTCTTCAGGCAGTTCCAGT 1845
||||||||||||||||||| | | ||| | ||| |||||||||||||||||||||||
Sbjct 1617 GATGGTACTGCAGTTGCAG--G-T---AGT-G-GGT-CTAGTTCTTCAGGCAGTTCCAGT 1667
Query 1846 TCTAGTGGTGGTAGTTCCTCGTCTAGTGATTCAGGGTCAGGTGGGAGTTCATCAGGTAGT 1905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 TCTAGTGGTGGTAGTTCCTCGTCTAGTGATTCAGGGTCAGGTGGGAGTTCATCAGGTAGT 1727
Query 1906 GATTCTGATGCAGATAGTGTTCAATCGCCATTTGTGGAAGCAAAAGAAGCCCAATGTTAA 1965
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1728 GATTCTGATGCAGATAGTGTTCAATCGCCATTTGTGGAAGCAAAAGAAGCTCAATGATAG 1787
Query 1966 AATCATTTGG-GAATTTAACCGTTGATTCTGTCCTGAAGTACTAGGAAC 2013
|||||||| | || |||| ||| |||||||||||||||| |||||||||
Sbjct 1788 AATCATTTTGTGA-TTTAGCCGCTGATTCTGTCCTGAAGCACTAGGAAC 1835
Score = 359 bits (194), Expect = 6e-98
Identities = 331/389 (85%), Gaps = 41/389 (11%)
Strand=Plus/Plus
Query 2051 AACTGAAGG-AAAGGATTTGTTTTTTCTTTCGATGATAAACTTAGGAAGCAGATGTAGTT 2109
||||||||| |||||||||||||||||||| ||||| ||||||||||||||| |||||||
Sbjct 1833 AACTGAAGGAAAAGGATTTGTTTTTTCTTTAGATGAAAAACTTAGGAAGCAGTTGTAGTT 1892
Query 2110 AGAAAGAAAAATGTAATAGGTAGATAGAAAGAGAGTGCTAGTTTAAGCAAGAAGAAGAGT 2169
||| || |||||||||| || | | ||| | | || || ||||||| |||
Sbjct 1893 AGAGAGGAAAATGTAAT-GG--G-T----AGATA--G--AG----AG--AGAAGAATAGT 1934
Query 2170 TCGTTATTTAATACCTTTTAGATTTAGGAGTTGTTTAGTGTATTTGTGAGATGCTGAACA 2229
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1935 TCGTTATTTAATACCTTTTAGATTTAGGA-CTGTTTAGTGTATTTGTGAGATGCTGAACA 1993
Query 2230 GAGGGTGAGAGTGAGTGGGTAGGTACTGTAGGagaagaagaagaagaaaagaGTCTTTTT 2289
|||||||||||||| || | | | |||| ||||||||||||||||||||||||||||
Sbjct 1994 GAGGGTGAGAGTGATTGCGCA---A-TGTA--AGAAGAAGAAGAAGAAAAGAGTCTTTTT 2047
Query 2290 AGGTTCTAT-GACTTTATTTATTTTTCTT-TGTTAGT-AGTGTTAAAGAGTCTGGTTGTG 2346
|||||||| |||| |||| |||||| | ||| || ||||||||| ||||||||||||
Sbjct 2048 CGGTTCTATTGACT--ATTT-TTTTTCCTATGTC-GTTAGTGTTAAAAAGTCTGGTTGTG 2103
Query 2347 GTAGGAAAAATGGTGATAGAAGAGAAGAAAGAAATCAATGCAATGTA-T--T--AGA--T 2399
|||||||||||||||||||||||||||| |||||||||||||||||| | | ||| |
Sbjct 2104 GTAGGAAAAATGGTGATAGAAGAGAAGACAGAAATCAATGCAATGTAGTAGTTGAGAGAT 2163
Query 2400 GTAAATGGTTGGCATATTAAAAAAGAAAA 2428
||||||||||| |||||||||||| ||||
Sbjct 2164 GTAAATGGTTGCCATATTAAAAAA-AAAA 2191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92102212410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5