BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65640.1
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496795 jgi|Araly1|496795|fgenesh2_kg.8__2611__AT5G65640.1 1921 0.0
> Ahg496795 jgi|Araly1|496795|fgenesh2_kg.8__2611__AT5G65640.1
Length=1266
Score = 1921 bits (1040), Expect = 0.0
Identities = 1205/1281 (94%), Gaps = 26/1281 (2%)
Strand=Plus/Plus
Query 8 cacacacacacacacacacTCTGTTTTCTTCGTCCATTCTATTACCAGAAAACAGAGTTT 67
|||| || ||||||||| ||||||||| ||| |||||||||||||||||||||||||||
Sbjct 2 CACAAACTCACACACACTCTCTGTTTTTTTCTTCCATTCTATTACCAGAAAACAGAGTTC 61
Query 68 GATAGAGAGAAAAGAATGGAACTGTCGACTCAAATGAATGTGTTCGAAGAGCTTCTTGTT 127
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CAGAGAGAGAAAAAAATGGAACTGTCGACTCAAATGAATGTGTTCGAAGAGCTTCTTGTT 121
Query 128 CCGACAAAGCAAGAAACAACCGACAACAACATCAACAATCTGAGCTTTAATGGCGGATTT 187
||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||
Sbjct 122 CCGACAAAGCAAGAAACCACCG---ACAACATCAACAACCTGAGCTTTAATGGCGGATTT 178
Query 188 GATCATCATCATCATCAATTCTTCCCAAATGGATATAATATTGATTACCTCTGTTTCAAC 247
| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 179 G---------ATCATCAATTCTTCCCAAATGCATATAATATTGATTACCTCTGTTTCAAC 229
Query 248 AATGAAGAAGAAGACGAAAATACCCTT-TTGTATCCTTCTTCTTTCATGGATCTAATCTC 306
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 230 AATGAAGAAGAAGACGAAAATACCCTTCTT-TATCCTTCTTCTTTCATGGATCTAATCTC 288
Query 307 TCAACCTCCTCCATTGCTTCTTCACCAACCGCCACCGTTACAACCACTGTCGCCGCCGTT 366
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 289 TCAACCTCCTCCATTGCTTCTTCACCAACCACCACCGTTACAACCACTGTCGCCGCCGTT 348
Query 367 ATCCTCCTCCGCGACCGCCG--G-AGCAACATTTGACTACCCTTTTCTTGAGGCTTTGCA 423
|||||||||||| ||||||| | |||| ||||||| |||||||||||||||||||| ||
Sbjct 349 ATCCTCCTCCGCTACCGCCGCCGCAGCATCATTTGATTACCCTTTTCTTGAGGCTTTACA 408
Query 424 AGAGATAATTGACTCTTCTTCCTCATCGCCTCCATTGATCCTTCAAAATGGTCAAGAAGA 483
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 409 AGAGATAATTGACTCTTCTTCCTCTTCACCTCCATTGATCCTTCAAAATGGTCAAGAAGA 468
Query 484 GAACTTTAATAATCCGATGTCGTATCCCTCTCCATTGATGGAGTCTGATCAGAGCAAGAG 543
||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 469 GAACTTTAACAATCCGACGTCGTATCCATCTCCATTGATGGAGTCTGATCAGAGCAAGAG 528
Query 544 CTTCAGTGTTGGTTACTGTGGAGGAGAGACGAACAAGAAGAAGAGCAAAAAGCTTGAAGG 603
|||||||||||||||||||||||| ||||||||||||||||||| ||||| || |||||
Sbjct 529 CTTCAGTGTTGGTTACTGTGGAGGGGAGACGAACAAGAAGAAGAATAAAAAACTCGAAGG 588
Query 604 CCAACCTTCTAAGAATCTCATGGCGGAGAGACGACGGAGAAAACGACTTAACGATCGTCT 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 CCAACCTTCTAAGAATCTCATGGCGGAGAGACGACGGAGAAAACGACTTAACGATCGTCT 648
Query 664 TTCTATGCTCCGATCCATCGTCCCAAAAATCAGTAAGATGGACAGGACATCGATATTAGG 723
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 649 TTCAATGCTCCGATCCATCGTCCCAAAAATCAGCAAGATGGACAGGACATCGATATTAGG 708
Query 724 AGATGCCATAGATTACATGAAAGAGCTTTTAGACAAAATCAACAAATTACAAGATGAGGA 783
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 AGATGCCATAGAATACATGAAAGAGCTTTTAGACAAAATCAACAAATTACAAGATGAGGA 768
Query 784 ACAAGAACTTGGAAATAGCAACAATTCACATCACTCTAAGCTCTTCGGTGATCTCAAGGA 843
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 ACGAGAACTTGGAAATAGCAACAATTCACATCACTCTAAGCTCTTCGGTGATCTCAAGGA 828
Query 844 TCTTAATGCGAACGAACCTCTGGTCAGAAACTCACCAAAGTTTGAAATAGATCGTAGAGA 903
||||||||| |||||| |||||||||||||||| |||||||||||||||||||| |||||
Sbjct 829 TCTTAATGCAAACGAATCTCTGGTCAGAAACTCTCCAAAGTTTGAAATAGATCGGAGAGA 888
Query 904 CGAGGATACTCGAGTTGATATATGCTGCTCGCCAAAACCGGGATTGCTACTATCTACTGT 963
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct 889 TGAGGATACTCGAGTTGATATATGTTGCTCTCCAAAACCGGGATTGCTTCTATCGACTGT 948
Query 964 GAATACATTAGAGACTCTAGGCTTGGAGATTGAACAATGTGTTATAAGCTGCTTTAGTGA 1023
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TAATACATTAGAGACTCTAGGCTTGGAGATTGAACAATGTGTTATAAGCTGCTTTAGTGA 1008
Query 1024 TTTCTCTTTGCAGGCTTCTTGTTCTGAGGGAGCTGAGCAGAGAGATTTCATAACATCAGA 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1009 TTTCTCTTTGCAGGCTTCTTGTTCTGAGGGAGCTGAGCAGAGAGATTTCATAACATCGGA 1068
Query 1084 AGATATAAAACAAGCATTATTCAGAAACGCAGGTTATGGTGGAAGCTGCTTGTAA--TGA 1141
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1069 GGATATAAAACAAGCATTATTCAGAAACGCAGGTTATGGTGGAAGTTGCTTGTAAAATGA 1128
Query 1142 GT---CATGATTGAAACTAATAAACCAAAACTATTGTTTATTTCTAA-TAATACTAGCGC 1197
|| ||||||||||| ||||||||||||| |||||||||||| ||| ||||||||||||
Sbjct 1129 GTTATCATGATTGAAATTAATAAACCAAAATTATTGTTTATTT-TAAATAATACTAGCGC 1187
Query 1198 TTATAAACTTTAGATGTTGTTTTAATTCCCTTGTGAGTTTGGtttttttttCCTAGGGGA 1257
|||||||||||||||||||| |||||||||||||||||||| ||||||| | | |||||
Sbjct 1188 TTATAAACTTTAGATGTTGTGTTAATTCCCTTGTGAGTTTGAATTTTTTT-CTT-GGGGA 1245
Query 1258 AAACATTATGAGTTCAGTTGT 1278
|||||||||||||||||||||
Sbjct 1246 AAACATTATGAGTTCAGTTGT 1266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49292931681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5