BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65650.1
Length=964
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951414 jgi|Araly1|951414|scaffold_803301.1 957 0.0
Ahg490970 jgi|Araly1|490970|fgenesh2_kg.7__403__AT4G36660.1 189 3e-47
> Ahg951414 jgi|Araly1|951414|scaffold_803301.1
Length=605
Score = 957 bits (518), Expect = 0.0
Identities = 576/604 (95%), Gaps = 3/604 (0%)
Strand=Plus/Plus
Query 61 CTCGCCGACACTCGAGCCT-TTTACCGATGAAGGATGGAGATTCCTTACCAATAAGCACT 119
|||||||||||||||| || | ||| ||||||||||||||| ||||||||| ||||||||
Sbjct 1 CTCGCCGACACTCGAG-CTCTCTACAGATGAAGGATGGAGACTCCTTACCATTAAGCACT 59
Query 120 TCTTCCGTCGCGGCGACGACGGTGACCGGAAAGAAGGAAACCGGTTATTCCGCTCTCTTC 179
|||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||
Sbjct 60 TCTTCCGTCGCGGCCACGACGGTGAACGCCAAGAAGGAAACCGGTTATTCCGCTCTCTTC 119
Query 180 TCGAAAGGCCGGTACAAGTTTTGGGCCTTAGCTGCGATTCTGTTACTCGCTTTCTGGTCA 239
|| |||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 120 TCCAAAGGCCGATACAAGTTTTGGGCCTTAGCTGCGATTTTGTTACTCGCATTCTGGTCA 179
Query 240 ATGCTCACTGGCACGGTCAATCTCCGTTGGTCTGCCGGTAACATTAACCATTTCACCGAC 299
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 180 ATGCTCACTGGCACCGTCAATCTCCGTTGGTCTGCCGGTAGCATTAACCATTTCACCGAC 239
Query 300 GATCTCGTCTTTCCCATCCACGAGGATCTCGATGTTCTTGAAATGGAGGAGAGGGAGAAA 359
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 240 GATCTCGTCTTTCCGATCCACGAGGATCTCGATGTTCTTGAAATCGAGGAGAGGGAGAAA 299
Query 360 GTGGTGAAGCACATGTGGGATGTGTATAACAATGGCCGTCGTATCAGATTACCTAGGTTT 419
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 300 GTGGTGAAGCACATGTGGGATGTGTATAACAATGGCCGTCGTATAAGATTACCGAGGTTT 359
Query 420 TGGCAAGAGGCCTTCGAGGCTGCTTACGAGGAGCTTACCAGTGATGTACCTGATGTGGTT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGGCAAGAGGCCTTCGAGGCTGCTTACGAGGAGCTTACCAGTGATGTACCTGATGTGGTT 419
Query 480 GAGGCTGCCATTTCCGAGATCGCTAGGATGTCTATTCGCTCCATTGTTATAGATCCGCCT 539
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 GAGGCTGCCATTTCCGAGATCGCTAGGATGTCTATTCGCTCCGTTGTTATAGATCCGCCT 479
Query 540 CCGCTTCATTCCACGAATGTACGAGAATTGACAAAGACTCTAAAACTTGCGGACAAAGGA 599
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 480 CCACTTCATTCTACGAATGTACGCGAATTGACAAAGACTCTAAAACTTGCGGACAAAGGA 539
Query 600 AGAGCAACTCAAATATCAAAACCAAGCAGCCGTCGATTGAAATAGCTATGGAGGCTTTAC 659
||| | ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 540 AGATCGACTCAAATATCAAAACCAAGCAGCCGTCGATTGAAATAGCTATAGAG-CTTTAC 598
Query 660 GAAA 663
||||
Sbjct 599 GAAA 602
> Ahg490970 jgi|Araly1|490970|fgenesh2_kg.7__403__AT4G36660.1
Length=843
Score = 189 bits (102), Expect = 3e-47
Identities = 263/339 (78%), Gaps = 17/339 (5%)
Strand=Plus/Plus
Query 182 GAA-AGGCCGGTACAAGTTTTGGGCCTTAGCTGCGATTCTG-TTACTCGCTTTCTGGTCA 239
||| ||| || |||||||| ||||| || ||||||||| || || | ||||| |||||
Sbjct 242 GAAGAGGTCGATACAAGTTCTGGGCGTTTGCTGCGATTTTGCTT-TTGGCTTTTTGGTCG 300
Query 240 ATGCTCACTGGCACGGTCAATCTCC-GTTGGTCTGCCGGTAA-CATTAACCATTTCA-CC 296
||| |||||||||| |||| ||||| ||| ||| |||| || | | |||| || | |
Sbjct 301 ATGTTCACTGGCACCGTCACTCTCCGGTT-ATCTACCGGGAATC-TAAACCGGTT-ATCG 357
Query 297 GACGATCTCGTCTTTCCCATCCACGAGGATCTCGATGTTCTTGAAATGGAGGAGAGGGAG 356
|| ||||| | |||| | | | || | || || ||||| ||||||||||||||||||
Sbjct 358 GAAGATCTAGGGATTCCGAACTATGAAAACCTTGACGTTCTGGAAATGGAGGAGAGGGAG 417
Query 357 AAAGTGGTGAAGCACATGTGGGATGTGTATAACAA-TGGCCGTCGTATCAGATTACCTAG 415
|||||||||||||| |||||||||||||||| ||| | | ||||| |||| ||| |||||
Sbjct 418 AAAGTGGTGAAGCATATGTGGGATGTGTATA-CAAATAGTCGTCGGATCAAATTGCCTAG 476
Query 416 GTTTTGGCAAGAGGCCTTCGAGGCTGCTTACGAGGAGCTTACCAGTGATGTACCTGATGT 475
|||||||||||||| || | |||||||| || || || || |||||||| |||| |
Sbjct 477 ATTTTGGCAAGAGGCTTTTGTTGCTGCTTATGAAGAACTCACTAGTGATGTGCCTG--G- 533
Query 476 GGTT-GAG--GCTGCCATTTCCGAGATCGCTAGGATGTC 511
|||| ||| ||||| ||| || ||||| | ||||||
Sbjct 534 GGTTAGAGAAGCTGCTATTGGTGAAATCGCCAAGATGTC 572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35797419063
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5