BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G65660.1

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg951415 jgi|Araly1|951415|scaffold_803302.1                        669    0.0  


> Ahg951415 jgi|Araly1|951415|scaffold_803302.1
Length=460

 Score =  669 bits (362),  Expect = 0.0
 Identities = 429/460 (93%), Gaps = 9/460 (2%)
 Strand=Plus/Plus

Query  115  CGCCACCGTCGTAGAAGAAGATGGAGAACACTCAAGATTTCTCGCCACCACACATGGATG  174
            |||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct  1    CGCCACCGTCGTAGTAGAAGATGGAGAACACTCAAGATTTCTCGCCGCCCCACATGGATG  60

Query  175  CTTCTCGGCCGTCACTAGGATTCCCTCTTGGCACAGCTCTGCTTCTTATCATCATTTTCA  234
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  61   CTTCTCGGCCGTCACTAGGATTCCCTCTTGGCACAGCTCTGCTTCTTATAATCATTTTCA  120

Query  235  GCCTCTCCGGAATATTCTCTTGTTGTTACCATTGGGACAAACATCGTTCTCTCCGCCGCT  294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCCTCTCCGGAATATTCTCTTGTTGTTACCATTGGGACAAACATCGTTCTCTCCGCCGCT  180

Query  295  CTTTGGCCAATGGTCG-------T-C-CCTCCGCCGACATCGAGTCTAATCCTTACAAAC  345
            ||||||||||||||||       | | |||||||||||||||||||||||||||||||||
Sbjct  181  CTTTGGCCAATGGTCGTCCCTCCTCCGCCTCCGCCGACATCGAGTCTAATCCTTACAAAC  240

Query  346  CCAAACCCCCTTTTCCGGAAATGAAGAAACCGCAGAATCTGAGCGTACCGGTGTTAATGC  405
            | ||||| ||||||||||| ||||||||||| |||||||||||||| ||||| |||||||
Sbjct  241  CTAAACCTCCTTTTCCGGACATGAAGAAACCTCAGAATCTGAGCGTGCCGGTATTAATGC  300

Query  406  CAGGAGATAATACACCCAAATTCATAGCATTGCCGTGTCCGTGTGCACCACCTCGACCTG  465
            | |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
Sbjct  301  CTGGAGATAATACACCCAAATTCATAGCATTGCCGTCTCCGTGTGCGCCACCTCGACCGG  360

Query  466  AAAAACTCACCGTAGATGTCCAAACTCCGCCGCAATCACCGCCTGTTAAGCCGGCGCGTT  525
            |||||| |||||||||||||||||||||||||||||| || ||||| |||||  ||||||
Sbjct  361  AAAAACCCACCGTAGATGTCCAAACTCCGCCGCAATCGCCACCTGTCAAGCCACCGCGTT  420

Query  526  TTCCTGTTCCTTTGTATTAGATTTAATTAGCTATAAGATA  565
            |||| |||||||||||||||||||| ||||||||||||||
Sbjct  421  TTCCCGTTCCTTTGTATTAGATTTAGTTAGCTATAAGATA  460



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27257885655


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5