BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65687.1
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358769 jgi|Araly1|358769|fgenesh1_pg.C_scaffold_8002556 2466 0.0
Ahg926144 jgi|Araly1|926144|scaffold_201705.1 126 5e-28
Ahg944013 jgi|Araly1|944013|scaffold_700242.1 121 2e-26
> Ahg358769 jgi|Araly1|358769|fgenesh1_pg.C_scaffold_8002556
Length=2745
Score = 2466 bits (1335), Expect = 0.0
Identities = 1451/1508 (96%), Gaps = 4/1508 (0%)
Strand=Plus/Plus
Query 84 ATTGAATCTGACAGCGAAAGACAGAGATAATGACGAGAGTTGGCCAGAGAGATTCTCCGG 143
|||||||||||||||| | | |||||||||||||| |||||||||||||||||||||||
Sbjct 1242 ATTGAATCTGACAGCG--A-A-AGAGATAATGACGAAAGTTGGCCAGAGAGATTCTCCGG 1297
Query 144 CTAAAGAAGAAGCTCCGCCGGCGACTAAAAAACGATTTTTGACTCCGGGAAGATTCGTGA 203
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1298 CTAAAGAAGAAGCTCCGCCGGCGACTAAAAAACGATTTTTGACTCCGGGAAGATTCGTTA 1357
Query 204 CAATCTTGTGTATCATTAACTTGATAAATTACGTTGATCGAGGAGTGATCGCGAGTAATG 263
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 CAATCCTGTGTATCATTAACTTGATAAATTACGTTGATCGAGGAGTGATCGCGAGTAATG 1417
Query 264 GTGTTAATGGAAGCTCAAAAGTATGTGATGCCAAAGGGGTTTGCTCTGCAGGAACTGGAA 323
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1418 GTGTTAATGGAAGCTCAAAAACATGCGATGCCAAAGGGGTTTGCTCTGCAGGAACTGGAA 1477
Query 324 TTCAGGGAGAGTTTAACTTAACTAACTTTGAAGATGGTCTTTTGTCATCTGCGTTTATGG 383
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 TTCAGGGAGAGTTTAAATTAACTAACTTTGAAGATGGTCTTTTGTCATCTGCGTTTATGG 1537
Query 384 TTGGACTTCTTGTGGCTTCTCCAATATTCGCTGGATTGTCAAAAAGATTCAACCCTTTTA 443
|||||||||||||||| ||||||||||| ||||||||||| |||||| |||| |||||||
Sbjct 1538 TTGGACTTCTTGTGGCATCTCCAATATTTGCTGGATTGTCCAAAAGAATCAATCCTTTTA 1597
Query 444 AACTAATCGGTGTTGGATTAACTGTTTGGACTATTGCTGTTATCGGTTGCGGGTTTTCCT 503
||||||| |||||||||||||| ||||||||||| |||| | | ||||||||||||||||
Sbjct 1598 AACTAATTGGTGTTGGATTAACCGTTTGGACTATCGCTGCTCTTGGTTGCGGGTTTTCCT 1657
Query 504 ACAACTTCTGGATGATTGCTGTTTTCAGAATGTTTGTTGGGGTTGGTGAGGCTTCCTTTA 563
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1658 ACAACTTCTGGATGATTGCTGTTTTCCGAATGTTTGTTGGGGTTGGTGAGGCTTCCTTTA 1717
Query 564 TTAGTCTTGCAGCACCTTATATCGATGATAGTGCTCCTGTTGCAAGGAAAAATTTCTGGC 623
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1718 TTAGTCTTGCAGCACCATATATCGATGATAGTGCTCCTGTTGCAAGGAAAAATTTCTGGC 1777
Query 624 TTGGACTGTTCTACATGTGTATACCAGCAGGAGTTGCTCTAGGCTATGTGTTTGGTGGAT 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1778 TTGGACTGTTCTACATGTGTATACCAGCAGGAGTTGCTCTAGGCTATGTGTTTGGTGGAT 1837
Query 684 ACATTGGAAACCATTTAGGATGGCGTTGGGCGTTTTACATAGAGGCAATCGCAATGGCTG 743
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1838 TCATTGGAAACCATTTAGGATGGCGTTGGGCGTTTTACATAGAGGCAATTGCAATGGCTG 1897
Query 744 TCTTCGTCATTTTGTCCTTCTGTATCAAACCACCGCAGCAGCTAAAAGGTTTTGCTGATA 803
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1898 TCTTCGTCGTTTTGTCCTTCTGTATCAAACCACCGCAGCAGCTAAAAGGTTTTGCTGATA 1957
Query 804 AGGATTCTAAGAAACCCTCTACATCTATTGAAACGGTTGCTCCTACAGATGCAGAAGCTT 863
| ||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1958 AAGATTCGAAGAAATCCTCTACATCTATTGAAACGGTCGCTCCTACAGATGCAGAAGCTT 2017
Query 864 CACAAATTAAAACCAAAACCCCCAAATCCAAGAACCTGGTTGTCCTATTTGGAAAAGACT 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2018 CACAAATTAAAACCAAAACCCCCAAATCCAAGAACCTGGTTGTCCTATTTGGAAAAGACT 2077
Query 924 TAAAGGCTCTTTTCAGCGAGAAAGTATTTATTGTAAATGTTCTTGGTTACATCACCTACA 983
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 2078 TAAAGGCTCTTTTCAGCGAGAAAGTATTTATAGTAAACGTTCTAGGTTACATCACCTACA 2137
Query 984 ACTTTGTGATTGGAGCTTACTCATATTGGGGACCAAAAGCCGGTTTTGGTATCTACAAAA 1043
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2138 ACTTTGTGATCGGAGCTTACTCATATTGGGGACCAAAAGCCGGTTTTGGTATCTACAAAA 2197
Query 1044 TGAAAAACGCGGACATGATTTTTGGAGGACTTACAATCATATGCGGAATAATTGGAACAT 1103
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2198 TGAAAAATGCAGACATGATTTTTGGAGGACTTACAATCATCTGCGGAATAATTGGAACAT 2257
Query 1104 TAGGTGGAAGCTATGTGCTTGATCGCATAAACGCTACTCTTTCAAACACCTTCAAGTTAC 1163
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 2258 TAGGTGGAAGCTATGTGCTTGATCGCATAAACGCCACTCTTTCAAACACGTTCAAGTTAC 2317
Query 1164 TAGCTGCATCAACTTTACTCGGCGCAGCGTTTTGTTTCACTGCTTTCTTGATGAAGAATA 1223
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2318 TAGCTGCATCAACTTTACTCGGCGCAGCGTTTTGTTTCACTGCTTTCTTAATGAAGAATA 2377
Query 1224 TGTATGCCTTCATCGCTTTATTCGCAGTGGGAGAAATTCTAATCTTTGCACCACAGGCTC 1283
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2378 TGTATGCCTTCATTGGTTTATTCGCAGTGGGAGAAATTCTAATCTTTGCACCACAGGCTC 2437
Query 1284 CGGTTAACTTTGTGTGTCTCCATTGCGTGAGACCAAACTTGAGACCATTGTCAATGGCTT 1343
| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 2438 CAGTTAACTTTGTTTGTCTCCATTGCGTTAGACCAAACTTGAGACCATTATCAATGGCTT 2497
Query 1344 CTTCAACTGTTTTGATCCATATCTTAGGCGATGTTCCTTCTTCTCCACTTTATGGGAAAA 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2498 CTTCAACTGTTTTGATCCATATCTTAGGCGATGTTCCTTCTTCTCCACTTTATGGGAAAA 2557
Query 1404 TGCAGGATCATTTAAAAAATTGGAGAAAATCAACACTTATCATTACTTCAATCCTCTTCC 1463
||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 2558 TGCAGGATCATCTAAAAAATTGGAGAACATCAACTCTTATCATTACTTCAATCCTCTTCG 2617
Query 1464 TCGCAGCTATTATATGGGGAATTGGGATATTTATGAATAGTGTGGATAGGTCTAATGAAG 1523
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2618 TCGCAGCTATTATATGGGGAATTGGTATATTTATGAATAGTGTGGATCGGTCTAATGAAG 2677
Query 1524 TAAGTGAAGACGATGAGGTCGAAGAAGATAAATTGGAAAGCAAAACAGAGAACTCTACTC 1583
|||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 2678 TAAGTGAAGATGATGAGGTCGAAGAAGAGAAATTGGAAAGCAAAGCAGAGAACTCTACTC 2737
Query 1584 TCGCCTAA 1591
||| ||||
Sbjct 2738 TCGTCTAA 2745
> Ahg926144 jgi|Araly1|926144|scaffold_201705.1
Length=409
Score = 126 bits (68), Expect = 5e-28
Identities = 88/96 (92%), Gaps = 7/96 (7%)
Strand=Plus/Minus
Query 65 TAAAGAAAGACAGAGTGTT---ATTGAATCTGACAGCGAAAGACAGAGATAATGACGAGA 121
||||||||||||||||||| |||||||||||||||| | | |||||||||||||| |
Sbjct 406 TAAAGAAAGACAGAGTGTTAAAATTGAATCTGACAGCG--A-A-AGAGATAATGACGAAA 351
Query 122 GTTGGCCAGAGAGATTCTCCGGCTAAAGAAGAAGCT 157
||||||||||||||||||||||||||||||||||||
Sbjct 350 GTTGGCCAGAGAGATTCTCCGGCTAAAGAAGAAGCT 315
> Ahg944013 jgi|Araly1|944013|scaffold_700242.1
Length=409
Score = 121 bits (65), Expect = 2e-26
Identities = 87/96 (91%), Gaps = 7/96 (7%)
Strand=Plus/Minus
Query 65 TAAAGAAAGACAGAGTGTT---ATTGAATCTGACAGCGAAAGACAGAGATAATGACGAGA 121
||||||||||||||||||| |||||||||||||||| | | |||||||||||| | |
Sbjct 406 TAAAGAAAGACAGAGTGTTAAAATTGAATCTGACAGCG--A-A-AGAGATAATGACAAAA 351
Query 122 GTTGGCCAGAGAGATTCTCCGGCTAAAGAAGAAGCT 157
||||||||||||||||||||||||||||||||||||
Sbjct 350 GTTGGCCAGAGAGATTCTCCGGCTAAAGAAGAAGCT 315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66543658015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5