BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65690.1
Length=2176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496802 jgi|Araly1|496802|fgenesh2_kg.8__2618__AT5G65690.1 3299 0.0
> Ahg496802 jgi|Araly1|496802|fgenesh2_kg.8__2618__AT5G65690.1
Length=2111
Score = 3299 bits (1786), Expect = 0.0
Identities = 1984/2079 (95%), Gaps = 15/2079 (1%)
Strand=Plus/Plus
Query 25 TTAGTAGAAATGGCGGGAAACGGAAACGAAAGTACCGGTGGAGACTTCAGTTTCTCGGCT 84
||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1 TTAGTGGAAATGGCGGGAAAGGGAAACGAAAATACCGGTGGAGACTTCAGTTTCTCGGCT 60
Query 85 GCGGCGGCCCGTGATGCGCTTCCGAGGATCACGACTGAGAAGGGCGGCAAATCTCCAGGG 144
|| ||||| |||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 61 GCTGCGGCGCGTGATGCGCTTCCGAGGATCACGACAGAGAAGGGCGGCAAATCT--A--- 115
Query 145 CCGGCAGACGTCTGCCAGGATGACATCGCACCGCGGGTCAACTTTCAGACCATCGACGAG 204
||||||| ||||| || |||| ||||||||||||||||||||||||||||||||||
Sbjct 116 ----CAGACGTGTGCCACGACGACACCGCACCGCGGGTCAACTTTCAGACCATCGACGAG 171
Query 205 CTTCACAGTCTCCAGAAGAAACGATCTGCCCCTACCACTCCTCTTAGAGATGGCAGCGCC 264
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 172 CTTCACAGTCTCCAGAGGAAACGATCTGCCCCGACCACTCCTCTTAGAGATGGCAGCGCC 231
Query 265 AGCGGAGTCAGCGGAACTAGTGGTCCGACTACTCCTGTCTCCAGCGAGACCATGCTTCAA 324
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 232 AGCGGAGTCAGCGGAACTAGTGGTCCGACCACTCCGGTCTCCAGCGAGACCATGCTTCAA 291
Query 325 TCCGTCAGTGCATCGTTGGCTTCGTTGACGAGAGAGACAGGACCGAAGTTAATAAGAGGA 384
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 292 TCCGTCAGTGCATCGTTGGCTTCGTTGACGAGAGAGACGGGACCGAAGTTAATAAGAGGA 351
Query 385 GATCCGACTTCGGCAGCTAAAGTAGCACACGTGCCAGTGACTCCTACGTCACTTCCGGCT 444
||||| || |||||||| ||||| |||||||||||||||||||||| |||||||||| ||
Sbjct 352 GATCCAACGTCGGCAGCGAAAGTGGCACACGTGCCAGTGACTCCTAGGTCACTTCCGACT 411
Query 445 GCTGACGTCAGCGACAGTGGCTTGAAGTTCACTCACATCCTTCACAACCTCTCTCCCGCC 504
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 412 GCTGACGTCAGCGACAGTGGCTTGAAGTTCACTCACATCCTTCACAACCTCTCTCCAGCC 471
Query 505 GAGTTGTACGAGCAAGCGATAAAGTTTGAGAAGGGATCGTTTGTGACATCGACCGGTGCG 564
|||||||||||||| ||||| |||| |||||| |||||||||||||||||||||||||||
Sbjct 472 GAGTTGTACGAGCAGGCGATTAAGTATGAGAAAGGATCGTTTGTGACATCGACCGGTGCG 531
Query 565 TTGGCTACATTGTCTGGAGCCAAAACCGGTCGGTCTCCTAAAGACAAGCGTGTGGTTAAG 624
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TTGGCTACATTGTCCGGAGCCAAAACCGGTCGGTCTCCTAAAGACAAGCGTGTGGTTAAG 591
Query 625 GATGATACCACTGAGGCCGAACTCTGGTGGGGAAAAGGATCACCAAACATTGAAATGGAT 684
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 592 GATGAGACCACTGAGGCCGAACTCTGGTGGGGGAAAGGATCACCAAACATTGAAATGGAT 651
Query 685 GAAAAAACTTTTTTGGTGAACCGAGAGAGAGCTGTTGATTACTTAAACTCCTTGGACAAG 744
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GAGCAAACTTTTTTGGTGAACCGAGAGAGAGCTGTTGATTACTTAAACTCCTTGGACAAG 711
Query 745 GTGTTTGTGAATGATCAATACCTAAACTGGGATCCAGAGAACAAAATCAAAGTGAGAATT 804
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 712 GTGTTTGTGAATGATCAATACCTAAACTGGGATCCAGAGAACAGAATCAAAGTGAGAATT 771
Query 805 GTTTCAGCAAGAGCTTACCATTCACTATTCATGCACAACATGTGTATCCGTCCAACACCT 864
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 GTTTCAGCTAGAGCTTACCATTCACTATTCATGCACAACATGTGTATCCGTCCAACACCT 831
Query 865 GAGGAGTTAGAGAATTTCGGGACACCCGATTTCACGATTTACAACGCGGGGAAATTCCCG 924
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 832 GAGGAGTTAGAGAATTTCGGGACACCCGATTTCACGATTTATAACGCGGGGAAATTCCCG 891
Query 925 TGTAACCGTTTCACTCATTACATGACATCTTCGACGAGTGTGGACATAAACCTAGGAAGA 984
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 892 TGTAACCGTTTCACTCATTACATGACATCTTCCACAAGTGTGGACATAAACCTAGGAAGA 951
Query 985 AGAGAGATGGTGATTCTAGGTACCCAATATGCTGGAGAAATGAAGAAAGGACTCTTTGGT 1044
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 952 AGAGAGATGGTGATTCTAGGTACACAATATGCTGGAGAAATGAAGAAAGGACTCTTTGGT 1011
Query 1045 GTGATGCATTATTTGATGCCTAAGAGAAAGATTTTGTCTCTTCACTCTGGTTGTAACATG 1104
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1012 GTGATGCATTATTTGATGCCTAAGAGAAAGATTTTGTCACTTCACTCTGGTTGTAACATG 1071
Query 1105 GGCAAAGATGGAGATGTTGCTCTCTTTTTCGGACTCTCTGGTACCGGAAAGACTACGTTG 1164
|| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 1072 GGAAAAGATGGAGATGTTGCTCTCTTTTTCGGACTTTCTGGAACCGGAAAGACTACATTG 1131
Query 1165 TCGACTGACCATAACCGGTATTTGATCGGAGATGATGAACATTGTTGGAGTGAGGCTGGA 1224
|||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1132 TCGACTGATCATAACCGATATTTGATCGGAGATGATGAACATTGTTGGAGTGAGACTGGA 1191
Query 1225 GTTTCGAATATCGAAGGTGGTTGTTACGCGAAATGCATTGATTTGGCTAGGGACAAAGAG 1284
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1192 GTTTCGAATATCGAAGGTGGTTGTTACGCGAAATGCATTGATTTGGCAAGGGAGAAAGAG 1251
Query 1285 CCTGATATCTGGAACGCTATCAAGTTTGGAACCGTTTTGGAGAATGTTGTGTTTGATGAG 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 CCTGATATCTGGAACGCTATCAAGTTTGGAACCGTTTTGGAGAATGTTGTGTTTGATGAG 1311
Query 1345 CATACACGAGAAGTGGATTACACTGACAAATCAGTGACGGAGAACACACGTGCGGCTTAT 1404
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 1312 CATACACGAGAAGTGGATTACACAGACAAATCGGTGACGGAGAACACACGTGCAGCTTAT 1371
Query 1405 CCGATAGAGTACATTCCAAACTCGAAGATACCGTGCGTTGGACCACACCCGAAGAACGTG 1464
||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1372 CCGATTGAGTACATTCCGAACTCGAAGATTCCGTGCGTTGGACCACACCCGAAGAACGTG 1431
Query 1465 ATCCTATTGGCTTGTGACGCCTTCGGTGTGTTGCCGCCAATCAGCAAGCTCAATCTTGCT 1524
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1432 ATCCTGTTGGCTTGTGACGCCTTTGGTGTGTTGCCACCAATCAGCAAGCTCAATCTTGCT 1491
Query 1525 CAGACTATGTACCATTTCATCAGTGGCTACACTGCTCTCGTTGCAGGAACAGAGGAAGGA 1584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 CAGACTATGTACCATTTCATCAGTGGCTACACTGCTCTCGTTGCAGGAACAGAGGAAGGA 1551
Query 1585 GTTAAGGAACCTCGAGCGACATTCTCAGCTTGTTTTGGTGCTGCTTTCATTATGCTACAC 1644
||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||
Sbjct 1552 GTTAAGGAACCTCGAGCAACATTCTCGGCTTGTTTCGGTGCTGCTTTCATTATGCTTCAC 1611
Query 1645 CCAACCAAGTACGCTGCTATGTTGGCTGAGAAAATGCAGGCTCAAGGAGCCACCGGTTGG 1704
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 CCAACCAAGTATGCTGCTATGTTGGCTGAGAAAATGCAGGCTCAAGGAGCCACCGGTTGG 1671
Query 1705 CTTGTTAACACCGGTTGGTCCGGTGGAAGCTACGGAACTGGAAGCCGAATCAAGTTGGCG 1764
||||||||||| || ||||||||||||||||| ||| ||||||| ||||||||||||||
Sbjct 1672 CTTGTTAACACTGGATGGTCCGGTGGAAGCTATGGATCTGGAAGTAGAATCAAGTTGGCG 1731
Query 1765 TATACACGAAAGATAATCGATGCTATACATTCGGGTAGTCTAC-TGAATGCAAGTTACCG 1823
|| ||||||||||| |||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 1732 TACACACGAAAGATTATCGATGCTATACATTCGGGTAGTCT-CTTGAATGCATCTTACCG 1790
Query 1824 TAAAACAGATATTTTTGGTTTGGAGATTCCAAATGAAGTAGAAGGAGTTCCTTCTGAGAT 1883
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1791 AAAAACAGATATTTTTGGTTTGGAAATTCCAAATGAAGTTGAAGGAGTTCCTTCTGAGAT 1850
Query 1884 ACTGGAACCTATTAATGCATGGCCTGATAAAATGGCTTATGAGGACACATTGTTGAAATT 1943
|||||||||||||||||| ||| || |||||||||||||||||||||||||||||| |
Sbjct 1851 ACTGGAACCTATTAATGCCTGGGAAGACAAAATGGCTTATGAGGACACATTGTTGAAACT 1910
Query 1944 GGCTGGTTTGTTTAAAAGCAATTTTGAGACATTCACAAGTCATAAGATTGGTGATGATGG 2003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 GGCTGGTTTGTTTAAAAGCAATTTTGAGACATTCACAAGTCATAAGATTGGTGATGATGG 1970
Query 2004 AAAATTGACTGAAGAGATTCTTGCAGCTGGTCCTAACTTCTAAAGTGATTGAAGATGATG 2063
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1971 AAAATTGACTGAAGAGATTCTTGCAGCTGGTCCTAACTTCTAA-GTGATTGAAGATGATG 2029
Query 2064 ATGAAAAACAAACCTTTTTACT--AACCAAAATAAGACT 2100
||||||||||||||||||| || |||||||||||||||
Sbjct 2030 ATGAAAAACAAACCTTTTT-CTCCAACCAAAATAAGACT 2067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81894026750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5