BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65700.1
Length=3383
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496807 jgi|Araly1|496807|fgenesh2_kg.8__2623__AT5G65700.1 5127 0.0
Ahg937778 jgi|Araly1|937778|scaffold_501969.1 2462 0.0
> Ahg496807 jgi|Araly1|496807|fgenesh2_kg.8__2623__AT5G65700.1
Length=3321
Score = 5127 bits (2776), Expect = 0.0
Identities = 3052/3186 (96%), Gaps = 15/3186 (0%)
Strand=Plus/Plus
Query 7 TCTCTACACTCACACCATCTCACAACCCTAATCTCTC-C-CAC-ACA-AGAGAGATAGAG 62
|||| |||||||||||||||||||||||||||||||| | ||| | | ||||||||||||
Sbjct 1 TCTCGACACTCACACCATCTCACAACCCTAATCTCTCACACACAAGAGAGAGAGATAGAG 60
Query 63 AGAAACAATGAAACTTTTTCTTCTCCTTCTTTTTCTTCTCCACATTTCTCATACCTTCAC 122
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATAAACAATGAAACTTTTTCTTCTCCTTCTTTTTCTTCTCCACATTTCTCATACCTTCAC 120
Query 123 CGCAAGCCGACCAATCTCCGAGTTCCGTGCTCTCCTCTCACTCAAAACCTCTCTCACCGG 182
| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 121 CACAAGCCGACCAATCTCCGAGTTCCGTGCTCTTCTCTCACTCAAATCCTCTCTCACCGG 180
Query 183 CGCCGGAGATGACAAAAACTCGCCTCTCTCTTCCTGGAAAGTCTCAACAAGCTTCTGTAC 242
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 181 CGCCGGAGATGACAAAAACTCGCCTCTCTCCTCCTGGAAAGTCTCAACTAGCTTCTGTAC 240
Query 243 ATGGATTGGTGTCACGTGCGATGTATCTCGCCGTCACGTGACTTCTCTTGATCTCTCCGG 302
||||| ||||||||||||||| || |||||||| ||||||||||||||||||||||| ||
Sbjct 241 ATGGACTGGTGTCACGTGCGACGTCTCTCGCCGGCACGTGACTTCTCTTGATCTCTCTGG 300
Query 303 TCTCAACCTCTCCGGTACTCTTTCCCCAGATGTTTCTCATTTACGTCTTCTTCAGAATCT 362
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 TCTTAACCTCTCCGGTACTCTTTCTCCAGATGTTTCTCATTTACGTCTTCTTCAGAATCT 360
Query 363 ATCACTCGCTGAAAATCTA-ATCTCCGGTCCGATTCCGCCGGAAATCTCGAGCCTTTCCG 421
|| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTCGCTCGCTGAAAATC-AGATCTCCGGTCCGATTCCGCCGGAAATCTCGAGCCTTTCCG 419
Query 422 GTCTTCGTCACTTAAATCTCTCGAACAATGTCTTCAACGGTTCGTTTCCCGATGAGATTT 481
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 420 GTCTTCGTCACTTAAATCTCTCAAACAATGCCTTCAACGGTTCGTTTCCCGATGAGATTT 479
Query 482 CTTCTGGATTGGTGAATCTCCGAGTTCTTGATGTCTACAACAACAATCTAACCGGAGATT 541
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CATCTGGATTAGTGAATCTCCGAGTTCTTGATGTCTACAACAACAATCTAACCGGAGATT 539
Query 542 TACCGGTTTCCGTCACCAATCTGACTCAGCTCCGGCACCTTCACCTCGGTGGTAACTACT 601
|||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 540 TACCTGTTTCCGTCACCAATCTGACTCAGCTCCGGCATCTTCACCTGGGTGGGAACTACT 599
Query 602 TCGCTGGAAAGATCCCGCCTTCGTACGGAAGCTGGCCAGTTATTGAGTATC-TAGCGGTT 660
||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||
Sbjct 600 TCGCTGGAAAGATCCCGCCTTCGTACGGAAGCTGGCCAGTTATTGAGTA-CTTAGCTGTT 658
Query 661 TCCGGCAACGAGCTTGTCGGGAAAATCCCTCCAGAGATCGGAAACCTAACGACTCTCCGG 720
|||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 659 TCCGGCAACGAGCTCGTCGGAAAAATCCCTCCAGAGATCGGAAACCTAAAGACTCTCCGG 718
Query 721 GAGCTTTACATCGGCTACTACAACGCTTTCGAAGACGGTCTTCCTCCAGAGATCGGAAAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GAGCTTTACATCGGCTACTACAACGCTTTCGAAGACGGTCTTCCTCCAGAGATCGGAAAT 778
Query 781 CTATCGGAGCTAGTCAGATTCGACGGAGCTAATTGCGGATTAACCGGTGAGATTCCGCCG 840
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 779 TTATCGGAGCTAGTCAGATTCGACGCCGCTAATTGCGGATTAACCGGTGAGATTCCGCCG 838
Query 841 GAGATTGGGAAGCTTCAGAAACTCGATACGCTTTTCTTGCAAGTGAATGTCTTCTCCGGT 900
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GAGATCGGGAAGCTTCAGAAACTCGATACGCTTTTCTTGCAAGTGAATGTCTTCTCCGGT 898
Query 901 CCATTAACTTGGGAGCTAGGAACGCTATCGAGTTTAAAATCAATGGATTTGTCTAACAAC 960
|| ||||||| ||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 899 CCGTTAACTTTGGAGCTAGGAACGCTTTCGAGCTTGAAATCAATGGATTTGTCTAACAAC 958
Query 961 ATGTTCACCGGAGAGATTCCAGCGAGTTTCGCAGAGTTGAAGAATCTCACGCTTTTGAAT 1020
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 959 ATGTTCACCGGAGAGATTCCAGCGAGATTCGCAGAGTTGAAGAATCTCACGCTTTTGAAT 1018
Query 1021 CTCTTCCGTAACAAACTTCACGGCGAGATACCGGAGTTCATCGGAGATTTGCCGGAGCTT 1080
|||||| | ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1019 CTCTTCAGAAACAAACTTCACGGCGAGATACCAGAGTTCATCGGAGAATTGCCGGAGCTT 1078
Query 1081 GAAGTGTTACAGCTTTGGGAGAACAATTTCACCGGAAGCATCCCGCAGAAATTAGGAGAA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1079 GAAGTGTTACAGCTTTGGGAGAACAATTTCACCGGAAGCATCCCGCAGAAATTGGGGGAG 1138
Query 1141 AACGGTAAACTAAATCTCGTCGATCTCTCTTCCAATAAGCTGACCGGAACTTTACCGCCG 1200
||||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 1139 AACGGTAAACTCAATCTCGTCGATCTCTCTTCCAACAAACTCACCGGAACTTTACCGCCG 1198
Query 1201 AACATGTGCTCCGGTAACAAGTTAGAAACTTTAATCACTCTTGGAAACTTTCTCTTTGGT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AACATGTGCTCCGGTAACAAGTTAGAAACTTTAATCACTCTTGGAAACTTTCTCTTTGGT 1258
Query 1261 TCAATCCCTGATTCTCTTGGTAAATGTGAGTCTTTGACCCGGATCCGAATGGGTGAGAAT 1320
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCAATCCCTGATTCTCTTGGCAAATGTGAGTCTTTGACCCGGATCCGAATGGGTGAGAAT 1318
Query 1321 TTCCTGAACGGGTCAATCCCAAAAGGACTATTCGGATTACCCAAATTAACTCAAGTGGAG 1380
||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1319 TTCCTAAACGGGTCAATCCCTCAAGGATTATTCGGATTACCCAAATTAACTCAAGTGGAG 1378
Query 1381 CTCCAAGATAATTATCTCTCCGGAGAGTTACCAGTCGCCGGAGGTGTCTCTGTTAATCTT 1440
|||||||||||||||||||||||||| ||||| || |||||||||||||| || |||||
Sbjct 1379 CTCCAAGATAATTATCTCTCCGGAGAATTACCGGTTGCCGGAGGTGTCTCCGTCAATCTA 1438
Query 1441 GGTCAGATCAGTTTATCAAACAACCAGCTCTCAGGTCCATTACCTCCGGCGATCGGGAAC 1500
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1439 GGTCAGATCAGTTTATCAAACAATCAGCTCTCAGGTCCATTACCTCCGGCGATCGGAAAC 1498
Query 1501 TTCACCGGCGTTCAGAAACTTCTTCTTGATGGAAACAAGTTCCAAGGTCCTATTCCTTCA 1560
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1499 TTCACCGGCGTTCAGAAACTTCTTCTTGATGGAAACAAGTTCGAAGGTCCGATTCCTTCG 1558
Query 1561 GAGGTAGGGAAGCTTCAGCAGCTCTCGAAGATTGATTTCAGCCACAACTTGTTCTCCGGT 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GAGGTAGGGAAGCTTCAGCAGCTCTCGAAGATTGATTTCAGCCACAACTTGTTCTCCGGT 1618
Query 1621 CGAATCGCGCCGGAGATTAGTCGTTGCAAGCTCTTAACGTTTGTTGATCTGAGCAGAAAC 1680
||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||
Sbjct 1619 CGAATCGCGCCGGAGATCAGCCGTTGCAAGCTCTTAACTTTTGTTGATCTGAGTAGAAAC 1678
Query 1681 GAGCTCTCCGGTGAAATCCCAAATGAGATCACTGCTATGAAGATATTGAATTACTTGAAC 1740
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1679 GAGCTCTCCGGTGAAATCCCAAATGAGATCACTGGTATGAAGATACTGAATTACTTGAAT 1738
Query 1741 CTGTCGAGAAACCATCTGGTTGGATCAATCCCTGGTTCAATCTCGTCAATGCAGAGCTTA 1800
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1739 CTGTCGAGAAACAATCTGGTTGGATCAATCCCTGGTTCGATCTCGTCAATGCAGAGCTTA 1798
Query 1801 ACATCTCTTGATTTCTCTTACAACAACCTCTCCGGTTTAGTTCCGGGAACAGGACAATTC 1860
||||| |||||||||||||||||||| ||||||||||| |||||||| || |||||||||
Sbjct 1799 ACATCACTTGATTTCTCTTACAACAATCTCTCCGGTTTGGTTCCGGGCACTGGACAATTC 1858
Query 1861 AGTTACTTCAACTACACATCGTTCTTGGGTAATCCTGATCTCTGTGGTCCTTATCTTGGT 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 AGTTACTTCAACTACACATCGTTCTTGGGTAATCCTGATCTCTGTGGTCCTTATCTTGGT 1918
Query 1921 CCTTGTAAAGACGGTGTTGCTAAAGGAGGTCACCAGAGTCATAGTAAAGGACCTTTATCA 1980
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1919 CCTTGTAAAGACGGTGTTGCTAAAGGAGCTCACCAGAGTCATAGTAAAGGACCTTTATCA 1978
Query 1981 GCTTCTATGAAGTTATTGCTTGTTCTTGGACTACTTGTTTGTTCGATTGCGTTCGCGGTA 2040
|||||||||||| ||||||| || ||||||||||| |||||||||||||| |||||||||
Sbjct 1979 GCTTCTATGAAGCTATTGCTCGTCCTTGGACTACTCGTTTGTTCGATTGCATTCGCGGTA 2038
Query 2041 GTAGCCATAATCAAAGCTAGATCATTGAAAAAGGCGAGTGAGTCACGGGCTTGGAGGTTA 2100
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2039 GTAGCTATAATCAAAGCTAGATCATTGAAAAAGGCGAGCGAGTCACGGGCTTGGAGGTTA 2098
Query 2101 ACAGCTTTCCAGAGACTAGACTTCACGTGTGACGATGTCTTGGATTCTCTCAAAGAAGAC 2160
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2099 ACAGCATTCCAGAGACTAGACTTCACATGTGACGATGTCTTGGATTCTCTCAAAGAAGAC 2158
Query 2161 AACATTATAGGCAAAGGAGGAGCTGGTATTGTCTATAAAGGCGTAATGCCTAATGGTGAT 2220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2159 AACATTATAGGCAAAGGAGGAGCTGGTATTGTCTATAAAGGCGTAATGCCTAATGGTGAT 2218
Query 2221 CTAGTCGCGGTTAAAAGACTCGCTGCAATGTCTCGTGGATCTTCCCATGATCACGGCTTC 2280
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 2219 CTAGTCGCGGTCAAAAGACTCGCTGCAATGTCCCGTGGATCTTCCCATGATCACGGATTC 2278
Query 2281 AACGCAGAGATTCAAACCTTAGGAAGGATAAGACACAGACACATAGTGAGGCTTCTCGGA 2340
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2279 AACGCAGAGATTCAAACCTTAGGAAGGATAAGACACAGACACATAGTGAGGCTTCTCGGT 2338
Query 2341 TTTTGCTCAAACCACGAGACGAATCTACTTGTCTATGAGTACATGCCTAATGGTAGTCTC 2400
|||||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 2339 TTTTGCTCTAACCACGAAACAAATCTACTAGTCTATGAGTACATGCCTAATGGTAGTCTC 2398
Query 2401 GGTGAGGTGCTTCACGGTAAGAAAGGAGGACACTTGCATTGGGACACACGTTACAAGATT 2460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2399 GGTGAGGTGCTTCACGGTAAGAAAGGAGGACACTTGCATTGGGACACACGTTACAAGATT 2458
Query 2461 GCTCTTGAAGCTGCTAAAGGACTCTGTTACCTTCATCACGATTGTTCTCCATTGATCGTT 2520
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 2459 GCTCTTGAAGCTGCTAAAGGACTCTGTTATCTTCATCACGATTGTTCTCCATTGATTGTT 2518
Query 2521 CACAGAGATGTCAAATCAAACAACATCCTCCTTGATTCAAACTTTGAAGCTCATGTTGCT 2580
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2519 CACAGAGATGTCAAATCAAACAACATCCTCCTCGATTCAAACTTTGAAGCTCATGTTGCT 2578
Query 2581 GACTTTGGTCTCGCTAAATTCCTTCAAGATTCCGGTACTTCTGAATGTATGTCTGCAATC 2640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2579 GACTTTGGTCTCGCTAAATTCCTTCAAGATTCCGGTACTTCTGAATGTATGTCTGCAATC 2638
Query 2641 GCTGGCTCTTACGGCTACATAGCTCCAGAGTATGCGTATACGTTGAAGGTAGATGAGAAG 2700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2639 GCTGGCTCTTACGGCTACATAGCTCCAGAGTATGCGTATACGTTGAAGGTAGATGAGAAG 2698
Query 2701 AGCGATGTGTATAGTTTCGGTGTGGTTCTTTTGGAACTCGTCACCGGAAGAAAACCTGTC 2760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2699 AGCGATGTGTATAGTTTCGGTGTGGTTCTTTTGGAACTCGTCACCGGAAGAAAACCTGTC 2758
Query 2761 GGAGAATTTGGAGACGGTGTCGATATAGTGCAATGGGTTCGTAAAATGACTGATTCGAAC 2820
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 2759 GGAGAATTTGGTGACGGTGTCGACATTGTGCAATGGGTTCGTAAAATGACTGATTCGAAC 2818
Query 2821 AAGGATTCGGTTCTGAAAGTATTGGATCCGAGACTTTCTTCGATTCCGATTCATGAAGTG 2880
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2819 AAAGATTCGGTTCTGAAAGTATTGGATCCGAGACTTTCATCGATTCCGATTCATGAAGTG 2878
Query 2881 ACGCACGTCTTCTATGTAGCGATGCTCTGTGTAGAAGAACAAGCTGTTGAGAGGCCGACT 2940
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2879 ACGCACGTCTTCTATGTCGCGATGCTCTGTGTCGAAGAACAAGCTGTTGAGAGGCCGACT 2938
Query 2941 ATGAGAGAAGTTGTTCAGATTCTCACTGAGATCCCGAAGTTGCCACCGTCGAAGGATCAG 3000
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2939 ATGAGGGAAGTTGTTCAGATTCTCACTGAGATCCCGAAGTTGCCACCGTCGAAGGATCAG 2998
Query 3001 CCGATGACGGAATCAGCGCCGGAGAGTGAGCTTTCGCCGAAGTCTGGTGTTCAAAGTCCG 3060
|||| |||||||||| ||||||||| |||||||||||||||||| |||| |||| |||||
Sbjct 2999 CCGACGACGGAATCAACGCCGGAGAATGAGCTTTCGCCGAAGTCCGGTGCTCAAGGTCCG 3058
Query 3061 CCGGATCTACTCAATCTATGAGAGTTTTCTGATT-CACGGCGGTTAATTTAGGGTACCGG 3119
||||||||||||||||||||||||||||| |||| | |||||||| ||||||||||||||
Sbjct 3059 CCGGATCTACTCAATCTATGAGAGTTTTCCGATTTC-CGGCGGTTGATTTAGGGTACCGG 3117
Query 3120 TATAAGGGGTAAATTTGTC-TTTTCATAAATGTTATTAGCGAT--GAGA--TTTGGTTGT 3174
||||||||||||||||||| |||||||||||||| |||||| | |||| |||||||||
Sbjct 3118 TATAAGGGGTAAATTTGTCATTTTCATAAATGTTTTTAGCGTTAAGAGAGATTTGGTTGT 3177
Query 3175 TAATTT 3180
||||||
Sbjct 3178 TAATTT 3183
> Ahg937778 jgi|Araly1|937778|scaffold_501969.1
Length=3051
Score = 2462 bits (1333), Expect = 0.0
Identities = 2451/2983 (82%), Gaps = 108/2983 (4%)
Strand=Plus/Plus
Query 76 CTTTTTCTTCTCCTTCTTTTTCTTCTCCACATTTCTCATACCTTCACCGCAAGC-CGACC 134
||| |||||||||| || | || ||||||||||||||| ||||||||| ||| |||
Sbjct 38 CTTCTTCTTCTCCTCCTCCTCCTCCTCCACATTTCTCATTCCTTCACCG-TAGCTAAACC 96
Query 135 AATCTCCGAGTTCCGTGCTCTCCTCTCACTCAAAACCTCTCTCACCGGCGCCGGAGATGA 194
|||| ||||| || ||||| |||||||||||| |||| |||||| || | || |
Sbjct 97 AATCACCGAGCTCAACGCTCTTCTCTCACTCAAATCCTCCCTCACCATCGAC---GA--A 151
Query 195 CAAAAACTCGCCTCTCTCTTCCTGGAAAGTCTCAACAAGCTTCTGTACATGGATTGGTGT 254
| |||| |||||| | || ||||| | ||||||| ||||||| |||||| |||||
Sbjct 152 C----ACTCACCTCTCACCTCATGGAACCTTTCAACAACCTTCTGTTCATGGACCGGTGT 207
Query 255 CACGTGCGATGTATCTCGCCGTCACGTGACTTCTCTTGATCTCTCCGGTCTCAACCTCTC 314
||||||||| || |||||||| |||||||| ||||| || ||||| ||||| ||||||||
Sbjct 208 CACGTGCGACGTCTCTCGCCGGCACGTGACCTCTCTCGACCTCTCTGGTCTTAACCTCTC 267
Query 315 CGGTACTCTTTCC-CCAGATGTTTCTCATTTACGTCTTCTT-CAGAATCTATCACTCGCT 372
||| ||||| ||| || || || ||||||||| || |||| ||||||||||||||||||
Sbjct 268 CGGAACTCTCTCCTCC-GACGTAGCTCATTTACCTC-TCTTACAGAATCTATCACTCGCT 325
Query 373 GAAAATCTA-ATCTCCGGTCCGATTCCGCCGGAAATCTCGAGCCTTTCCG-GTCTTCGTC 430
| |||| | ||||| ||||| ||||||||||||||||| | |||| || | |||||||
Sbjct 326 GCTAATC-AGATCTCAGGTCCTATTCCGCCGGAAATCTCCAATCTTTACGAG-CTTCGTC 383
Query 431 ACT-TAAATCTCTCGAACAATGTCTTCAACGGTTCGTTTCCCGATGAGA-TTTCTTCTGG 488
| | | |||||||| || |||| |||||||||||| | ||||||||| | | || |||||
Sbjct 384 A-TCTCAATCTCTCCAATAATGGCTTCAACGGTTCATATCCCGATGA-ACTCTCCTCTGG 441
Query 489 ATTGGTGAATCTCCGAGTTCTTGATGTCTACAACAACAATC-TAACCGGAGATTTACCGG 547
||||||||||||||| ||||| ||| | || |||||||| | ||||||||||||||||||
Sbjct 442 ATTGGTGAATCTCCGTGTTCTCGATTTGTATAACAACAA-CTTAACCGGAGATTTACCGG 500
Query 548 TTTCCGTCACCAATCTGACTCAGCTCCGGCACCTTCACCTCGGTGGTAACTACTTCGCTG 607
|||| |||| |||||||||||||||||||| |||||||||||||| || |||||| | |
Sbjct 501 TTTCAATCACTAATCTGACTCAGCTCCGGCATCTTCACCTCGGTGGGAATTACTTCTCCG 560
Query 608 G-AAAGATCCCGCCTTCGTACGGAAGCTGGCCAGTTATTGAGTATCTAGCGGTTTCCGGC 666
| ||| |||||| | ||||||||| |||||| ||| | ||||||||||||||||||||
Sbjct 561 GTAAA-ATCCCGGCGACGTACGGAACCTGGCCTGTTCTCGAGTATCTAGCGGTTTCCGGT 619
Query 667 AACGAGCTTGTCGGGAAAATCCCTCCAGAGATCGGAAACCTAACGACTCTCCGGGAGCTT 726
|||||||| |||| ||||||||||| ||||||||||||||||||||||| || || |||
Sbjct 620 AACGAGCTAATCGGTAAAATCCCTCCGGAGATCGGAAACCTAACGACTCTTCGTGAACTT 679
Query 727 TACATCGGCTACTACAACGCTTTCGAAGACGGTCTTCCTCCAGAGATCGGAAATCTATCG 786
|||||||| || ||||||||||| ||||| |||||||| || ||||| |||||| | |||
Sbjct 680 TACATCGGATATTACAACGCTTTTGAAGATGGTCTTCCACCGGAGATTGGAAATTTGTCG 739
Query 787 GAGCTAG-TCAGATTCGACGGAGCTAATTGCGGATTAACCGGTGAGATTCCGCCGGAGAT 845
||||| | || | ||||||| |||||||| || ||||||||||||||||| ||||||||
Sbjct 740 GAGCTTGTTC-GGTTCGACGCTGCTAATTGTGGTTTAACCGGTGAGATTCCACCGGAGAT 798
Query 846 TGGGAAGCTTCAGAAACTCGATACGCT-TTTCTTGCAAGTGAATGTC-TTCTCCGGTCCA 903
||||||||||||||| || |||||| | |||||| ||||| |||| | || || || ||
Sbjct 799 TGGGAAGCTTCAGAAGCTAGATACGTTGTTTCTT-CAAGTAAATG-CGTTTTCAGGGACA 856
Query 904 TTAACTTGGGAGCTAGGAACGCTATCGAGTTTAAAATCAATGGATTTGTCTAACAACATG 963
||||||| ||||| ||| | || || || ||||||||||||||||||||||| |||
Sbjct 857 TTAACTTCAGAGCTGGGATTTATCTCAAGCTTGAAATCAATGGATTTGTCTAACAATATG 916
Query 964 TTCACCGGAGAGATTCCAGCGAGTTTCGCAGAGTTGAAGAATC-TCACGCTT-TTGAATC 1021
|| ||||| |||||||| |||||||| || || ||||||| | | ||| || |||||||
Sbjct 917 TTTACCGGTGAGATTCCGGCGAGTTTTTCACAGCTGAAGAA-CTTAACG-TTGTTGAATC 974
Query 1022 TCTTCCGTAACAAACT-TCACGGCGAG-ATACCGGAGTTCATCGGAGATTTGCCGGAGCT 1079
||||| | ||||| || | |||| | | ||||| ||||||||||| || ||||||||||
Sbjct 975 TCTTCAGGAACAAGCTAT-ACGGTG-GTATACCTGAGTTCATCGGTGAAATGCCGGAGCT 1032
Query 1080 TGAAGTGTTACAGCTTTGGGAGAACAATTTCACCGGAAGCATCCCGCAGAAATTAGGAGA 1139
||||||||||||||||||||||||||||||||||| | || || |||||||| || ||
Sbjct 1033 AGAAGTGTTACAGCTTTGGGAGAACAATTTCACCGGTGGTATTCCTCAGAAATTGGGGGA 1092
Query 1140 AAACGGTAAACTAA--ATCTCGTCGATCTCTCTTCCAATAAGCTGACCGGAACTTTACCG 1197
||| |||| | || || || | || |||||||| || || || ||||| ||||| |||
Sbjct 1093 AAATGGTAGATTAGTGAT-TCTT-GACCTCTCTTCAAACAAACTCACCGGCACTTTGCCG 1150
Query 1198 CCGAACATGTGCTCCGGTAACAAGTTAGAA-ACTTTAATCACTCTTGGAAACTTTCTC-T 1255
||||| ||||||||||||||| |||| | || ||||||||||| || ||||| || |
Sbjct 1151 CCGAATATGTGCTCCGGTAACCGGTTA-ATGACATTAATCACTCTCGGTAACTT-CTTGT 1208
Query 1256 TTGGTTCAATCCCTGATTCTCTTGGTAAATGTGAGTCTTTGACCCGGATCCGAATGGGTG 1315
||||||||||||| ||||| ||||| |||||||||||| |||||||||||||||||||||
Sbjct 1209 TTGGTTCAATCCCGGATTCGCTTGGCAAATGTGAGTCTCTGACCCGGATCCGAATGGGTG 1268
Query 1316 AGAATTTCCTGAACGGGTCAATCCCAAAAGGACTATTCGGATTACCCAAATTAACTCAAG 1375
||||||| || |||||||| || ||||| || || ||||| |||||||||||| ||||||
Sbjct 1269 AGAATTTTCTCAACGGGTCGATTCCAAAGGGGCTTTTCGGGTTACCCAAATTATCTCAAG 1328
Query 1376 TGGAGCTCCAAGATAATTATCTCTCCGGAGAGTTACC-AGTC-GCCGGAGGTG---TCTC 1430
||||||| ||||||||||| ||| ||||||||||||| | | || ||||| | ||||
Sbjct 1329 TGGAGCTTCAAGATAATTACCTCACCGGAGAGTTACCGA-TAAGC-GGAGGGGGAGTCTC 1386
Query 1431 TGTTAATCTTGGTCAGATCAGTTTATCAAACAACCAGCTCTCAGGTCCATTACCTCCGGC 1490
|| | | ||||||||||| ||| | || || ||||||||||| |||||||||||| | ||
Sbjct 1387 TGGTGACCTTGGTCAGATTAGTCTGTCTAATAACCAGCTCTCTGGTCCATTACCTGCTGC 1446
Query 1491 GATCGGGAACTTCACCGGCGTTCAGAAACTTCTTCTTGATGGAAACAAGTTC-CAAGGTC 1549
|| || |||||| |||| ||||| ||||| || |||||||| |||||||| | ||||
Sbjct 1447 TATTGGAAACTTCTCCGGTGTTCAAAAACTACTCCTTGATGGTAACAAGTTTGCT-GGTC 1505
Query 1550 CTATTCCTTCAGAGGTAGGGAAGCTTCAGCAGCTCTCGAAGATTG-ATTTCAGCCACAA- 1607
| ||||| | ||| | |||| |||||||||||| || ||| ||| |||| ||||| ||
Sbjct 1506 CCATTCCACCGGAGATTGGGAGGCTTCAGCAGCTATCTAAG-TTGGATTTTAGCCATAAT 1564
Query 1608 CTTGTTCTCCGGTCGAATCGCGCCGGAGATTAGTCGTTGCAAGCT-CTTAACGTTTGTTG 1666
|| ||| || ||||| ||||| |||||||| |||||||| ||||| || |||||||||||
Sbjct 1565 CT-GTTTTCGGGTCGGATCGCACCGGAGATCAGTCGTTGTAAGCTGCT-AACGTTTGTTG 1622
Query 1667 ATCTGAG-CAGAAACGAGCTCTCCGGTGAAATCCC-AAATGAGATCACTGCTATGAAGAT 1724
||||||| | | || |||||||| ||||| || || ||| || ||||||| ||||| |||
Sbjct 1623 ATCTGAGTC-GTAATGAGCTCTCAGGTGATATTCCTAAA-GAAATCACTGGTATGAGGAT 1680
Query 1725 ATTGAATTACTTGAACCTGTCGAGAAACCATCTGGTTGGATCAATCCCTG-GTTCAATCT 1783
|||||||||||||| || || ||||||||||| ||||| || || |||| | | ||
Sbjct 1681 CTTGAATTACTTGAATCTTTCAAGAAACCATCTCGTTGGTTCGATACCTGTGA-CGATAG 1739
Query 1784 CGTCAATGCAGAGCTTAACATCTCTTGATTTCTCTTACAACAACCTCTCCGGTTTAGTTC 1843
| ||||||||||| || ||||| ||||||||||||||||||| ||||| ||| ||||||
Sbjct 1740 CATCAATGCAGAGTTTGACATCAGTTGATTTCTCTTACAACAATCTCTCTGGTCTAGTTC 1799
Query 1844 CGGGAACAGGACAATTCAGTTACTTCAACTACACATCGTTCTTGGGTAATCCTGATCTCT 1903
|| | || ||||| || ||||||||||| ||||||||||| ||||||||| ||||||| |
Sbjct 1800 CGAGCACTGGACAGTTTAGTTACTTCAATTACACATCGTTTTTGGGTAATTCTGATCTTT 1859
Query 1904 GTGGTCCTTATCTTGG-TCCTTGTAAAGACGGTGTTGCTAAAGGAGGTCACCAGAGTCAT 1962
||||||||||| |||| |||||| ||| |||||| ||||||| ||||
Sbjct 1860 GTGGTCCTTAT-TTGGGTCCTTG------CGGA------AAAGGAACTCACCAGCCTCAT 1906
Query 1963 AGTAAAGGACCTTTATCAGCTTCTATGAAGTTATTGCTTGTTCTTGGACTACT-TGTTTG 2021
|| ||| |||||||| ||| ||| || | || || || || ||| | || | ||||
Sbjct 1907 -GTTAAG--CCTTTATCTGCTACTACAAAACTGTTACTCGTCCTCGGATTGCTCT-TTTG 1962
Query 2022 TTCGATTGCGTTCGCGGTAGTAGCCATAATCAAAGCTAGATCATTGAAAAAGGCGAGTGA 2081
|||||| | ||| || |||| ||||| | ||||||| | || |||| ||| ||||||||
Sbjct 1963 TTCGATGGTGTTTGCCATAGTGGCCATTACCAAAGCTCGGTCCTTGAGAAATGCGAGTGA 2022
Query 2082 -GTCACGGGCTTGGAGGTTAACAGCTTTCCAGAGACTAGACTTCACGTGTGACGATGTCT 2140
| || || | ||||| || || ||||||||||||||||||||||| |||||||||||||
Sbjct 2023 AGCCAAGG-CATGGAGATTGACTGCTTTCCAGAGACTAGACTTCACTTGTGACGATGTCT 2081
Query 2141 TGGATTCTCTCAAAGAAGACAACATTATAGGCAAAGGAGGAGCTGGTATTGTCTATAAAG 2200
|||| |||||||| ||||||||||| || || ||||| || || || |||||||| ||||
Sbjct 2082 TGGACTCTCTCAAGGAAGACAACATCATCGGTAAAGGCGGTGCCGGGATTGTCTACAAAG 2141
Query 2201 GCGTAATGCCTAATGGTGATCTAGTCGCGGTTAAAAGACTCGCTGCAATGTCTCGTGGAT 2260
|| | |||||||| || |||||||||||||| || ||| | ||| ||||||| | |||||
Sbjct 2142 GCATTATGCCTAACGGCGATCTAGTCGCGGTCAAGAGATTGGCTACAATGTCCCATGGAT 2201
Query 2261 CTTCCCATGATCACGGCTTCAACGCAGAGATTCAAAC-CTTAGGAAGGATAAGACACAGA 2319
|||||||||||||||| |||||||| ||||||||||| || ||| || || |||||||||
Sbjct 2202 CTTCCCATGATCACGGGTTCAACGCCGAGATTCAAACGCT-AGGTAGAATCAGACACAGA 2260
Query 2320 CACATAGTGAGGCTTCTCGGATTTTGCTCAAACCACGAGACGAATCTACTTGTCTATGAG 2379
||||| ||||| || ||||| |||||||| |||||||| |||||||| || || || |||
Sbjct 2261 CACATCGTGAGACTGCTCGGGTTTTGCTCCAACCACGAAACGAATCTCCTAGTGTACGAG 2320
Query 2380 TACATGCCTAATGGTAGTCTCGGTGAGGTGCTTCACGGTAAGAAAGGAGGACACTTGCAT 2439
||||||||||||||||| || || ||||| ||||| || ||||||||||| || || |||
Sbjct 2321 TACATGCCTAATGGTAGCCTTGGAGAGGTTCTTCATGGAAAGAAAGGAGGTCATTTACAT 2380
Query 2440 TGGGACACACGTTACAAGATTGCTCTTGAAGCTGCTAAAGGACTCTGTTACCTTCATCAC 2499
|||||||||||||| ||||||||||||||||| || || || || || || || || |||
Sbjct 2381 TGGGACACACGTTATAAGATTGCTCTTGAAGCAGCCAAGGGTCTTTGCTATCTCCACCAC 2440
Query 2500 GATTGTTCTCCATTGATCGTTCACAGAGATGTCAAATCAAACAACATCCTCCTTGATTCA 2559
|||||||| || ||||||||||| |||||||| ||||| ||||| |||||||| |||||
Sbjct 2441 GATTGTTCCCCGTTGATCGTTCATAGAGATGTTAAATCCAACAATATCCTCCTCGATTCC 2500
Query 2560 AACTTTGAAGCTCATGTTGCTGACTTTGGTCTCGCTAAATTCCTTCAAGATTCCGGTACT 2619
||||||||||||||||| || || ||||| ||||| |||||||| |||||||| ||||||
Sbjct 2501 AACTTTGAAGCTCATGTCGCCGATTTTGGCCTCGCCAAATTCCTCCAAGATTCTGGTACT 2560
Query 2620 TCTGAATGTATGTCTGCAATCGCTGGCTCTTACGGCTACATAGCTCCAGAGTATGCGTAT 2679
|||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 2561 TCTGAATGTATGTCCGCCATCGCCGGCTCTTACGGCTACATAGCTCCAGAGTACGCGTAT 2620
Query 2680 ACGTTGAAGGTAGATGAGAAGAGCGATGTGTATAGTTTCGGTGTGGTTCTTTTGGAACTC 2739
|| |||||||||||||||||||| |||||||||||||||||||| |||||| | ||||||
Sbjct 2621 ACATTGAAGGTAGATGAGAAGAGTGATGTGTATAGTTTCGGTGTTGTTCTTCTAGAACTC 2680
Query 2740 GTCACCGG-AAGAAAACCTGTCGGAGAATTTGGAGACGGTGTCGATATAGTGCAATGGGT 2798
||||||| || |||||| |||||||||||||| ||||| || ||||| || ||||||||
Sbjct 2681 ATCACCGGGAA-AAAACCCGTCGGAGAATTTGGTGACGGCGTTGATATCGTTCAATGGGT 2739
Query 2799 TCGTAAA-ATGACTGATTCGAACAAGGATTCG-GTTCTGAAAGTA-TTGGATCCGAGACT 2855
| | || ||||| ||||| || || |||| | || || |||||| ||| ||| |||||
Sbjct 2740 TAG-AAGCATGACGGATTCAAATAAAGATT-GTGTGCTCAAAGTAATTG-ATCTTAGACT 2796
Query 2856 TTCTTC-GATTCC-GATTCATGAAGTGACGCACGTCTTCTATGTAGCGATGCTCTGTGTA 2913
||||| | | || | |||| ||||| || ||||||||||| || ||| ||||||| ||
Sbjct 2797 CTCTTCTG-TACCAG-TTCACGAAGTAACACACGTCTTCTACGTTGCGTTGCTCTGCGTT 2854
Query 2914 GAAGAACAAGCTGTTGAGAGGCCGACTATGAGAGAAGTTGTTCAGATTCTCACTGAGATC 2973
||||||||||| || ||||||||||| ||| | ||||| |||||||||||||||||||||
Sbjct 2855 GAAGAACAAGCGGTGGAGAGGCCGACGATGCGTGAAGTCGTTCAGATTCTCACTGAGATC 2914
Query 2974 CCGAAGTTGCCACCGTCGAAGGATCAGCCGATGACGGAATCAG 3016
|| ||| | || | |||||| | ||| || | |||||||||
Sbjct 2915 CCAAAGATCCCTCTTTCGAAGCAGCAGGCG--G-CGGAATCAG 2954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127721214988
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5