BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65710.1
Length=2982
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496808 jgi|Araly1|496808|fgenesh2_kg.8__2624__AT5G65710.1 4512 0.0
> Ahg496808 jgi|Araly1|496808|fgenesh2_kg.8__2624__AT5G65710.1
Length=2988
Score = 4512 bits (2443), Expect = 0.0
Identities = 2801/2977 (94%), Gaps = 11/2977 (0%)
Strand=Plus/Plus
Query 13 ACTAAtctcttcttctttc-tctctttacttcttctttcttgttttctccaagtttcttc 71
|||| ||||||||| ||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 16 ACTACTCTCTTCTT-GTTCATCTCTCTAATTCTTCTTTCTTGTTTTCTCCAAGTTTCTTC 74
Query 72 CAATGGAGACGCTGAGATATTGAGTAGAGTTAAAAAGACCCGACTTTTCGACCCCGATGG 131
||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 75 CAATGGAGACGCTGAGATACTGAGTCGGGTTAAAAAGACCCGACTTTTCGACCCCGATGG 134
Query 132 AAATTTACAAGATTGGGTCATAACCGGAGATAATCGGAGTCCATGTAATTGGACGGGAAT 191
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 135 AAATTTACAAGATTGGGTCATAACCGGAGATAATCGGAGTCCGTGTAATTGGACGGGAAT 194
Query 192 CACATGCCACATCAGAAAAGGTAGCTCCCTCGCCGTCACTACCATTGATCTCTCCGGCTA 251
||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 195 CACATGCGACATCAGAAAAGGTAGCTCCCTCGCCGTCACGGCCATTGATCTCTCAGGCTA 254
Query 252 TAATATCTCCGGTGGCTTTCCCTACGGATTCTGTCGTATCCGTACACTCATCAACATCAC 311
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 255 TAATATCTCCGGTGGGTTTCCTTACGGATTCTGTCGTATCCGTACACTCATCAACATCAC 314
Query 312 TCTTTCTCAAAACAATCTCAATGGTACGATTGATTCTGCTCCTCTCTCCCTCTGTTCTAA 371
||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||
Sbjct 315 TCTTTCTCAAAACAATCTCAACGGTACGATTGATTCTGGTCCTCTCTCGCTCTGTTCTAA 374
Query 372 ACTTCAGAATTTGATTCTCAATCAAAACAACTTCTCCGGTAAATTACCGGAATTCTCACC 431
| ||||| |||||| |||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 375 AATTCAGGTTTTGATCCTCAATGTAAACAACTTCTCCGGTAAATTACCGGAATTCTCGCC 434
Query 432 GGAGTTTCGTAAATTACGAGTCCTCGAATTGGAATCAAACCTCTTCACCGGTGAGATTCC 491
||| |||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||
Sbjct 435 GGACTTTCGTAATTTACGCGTCCTCGAATTGGAATCAAACCTGTTCACCGGCGAAATTCC 494
Query 492 TCAAAGTTACGGGAGA-CTCACTGCTCTGCAAGTTCTGAATCTTAATGGTAACCCGCTCA 550
|||||||||||||||| | || ||| ||||||||||||| ||||| || ||||||||||
Sbjct 495 TCAAAGTTACGGGAGATTTAAC-GCTTTGCAAGTTCTGAACCTTAACGGCAACCCGCTCA 553
Query 551 GTGGAATCGTTCCGGCGTTTTTGGGTTATCTGACTGAGTTAACTCGTCTTGATCTCGCTT 610
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 554 GTGGAATCGTTCCGGCGTTTCTGGGTAATCTGACTGAGTTAACTCGTCTTGATCTCGCTT 613
Query 611 ACATCAGTTTTGATCCTAGTCCGATTCCATCAACCTTGGGGAACTTGTCGAATCTGACTG 670
|||||||||||||| || ||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct 614 ACATCAGTTTTGATTCTGGTCCGATTCCATCAACCTTCGGGAACTTGACGAATTTGACTG 673
Query 671 ATCTTCGGCTAACTCACTCGAACCTCGTCGGAGAAATTCCTGATTCGATCATGAATCTGG 730
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 AACTTCGGCTAACTCACTCGAACCTCGTCGGAGAAATTCCTGATTCGATCATGAATCTGG 733
Query 731 TGTTGTTAGAGAATCTTGATTTAGCTATGAATAGTCTCACCGGAGAAATACCTGAGAGTA 790
|||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 734 TGTTGTTAGAGAATCTCGATTTGGCTATGAATGGTCTCACCGGAGAAATACCTGAGAGTA 793
Query 791 TCGGAAGACTCGAATCGGTTTACCAGATTGAGCTCTACGATAACCGGTTATCTGGAAAAT 850
||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 794 TCGGACGACTCGAATCGGTTTATCAGATTGAGCTCTACGATAATCGGTTATCTGGAAAAT 853
Query 851 TACCGGAGAGTATCGGAAATTTAACCGAATTGAGGAATTTTGATGTCTCGCAGAATAATC 910
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 854 TGCCGGAGAGTATCGGAAATTTAACCGAATTGAGGAATTTTGATGTATCGCAGAATAATC 913
Query 911 TAACCGGTGAACTACCGGAAAAGATCGCTGCTCTGCAACTTATCTCTTTCAATCTCAATG 970
| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 TCACCGGTGAATTGCCGGAAAAGATCGCTGCTCTGCAACTTATCTCTTTCAATCTCAATG 973
Query 971 ATAATTTCTTCACCGGAGGATTACCAGATGTCGTAGCTTTGAATCCTAATCTCGTTGAAT 1030
|||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||
Sbjct 974 ATAATTTCTTCACCGGCGAATTACCAGATGTCGTAGCTTTGAATCCTAATCTCGTCGAAT 1033
Query 1031 TCAAAATCTTCAACAACAGTTTCACGGGGACGTTACCAAGGAATCTCGGGAAATTCTCAG 1090
|||| |||||||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 1034 TCAAGATCTTCAACAACAGTTTCACGGGGACGTTACCTAGTAATCTCGGAAAATTCTCAG 1093
Query 1091 AAATCTCTGAATTCGATGTCTCGACGAACAGATTCTCCGGTGAATTGCCGCCGTATTTGT 1150
|| | |||||| ||||||||||||||||||||||| |||| ||||||||||||||| | |
Sbjct 1094 AACTATCTGAAATCGATGTCTCGACGAACAGATTCACCGGCGAATTGCCGCCGTATCTCT 1153
Query 1151 GCTACAGAAGAAAACTTCAGAAGATTATCACCTTCAGCAATCAATTAAGCGGCGAAATTC 1210
||||||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||
Sbjct 1154 GCTACAGAAGAAAACTTCAAAAGATCATCACCTTCAGCAATCAATTGAGTGGCGAAATTC 1213
Query 1211 CGGAATCTTACGGCGATTGTCATTCGCTTAATTACATTCGTATGGCGGATAACAAACTCT 1270
||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1214 CGGAAGCTTACGGCGATTGTCATTCGCTTAATTACATCCGAATGGCGGATAACAAACTCT 1273
Query 1271 CCGGCGAAGTTCCGGCTAGGTTTTGGGAACTTCCTCTTACTCGTCTTGAGCTAGCCAACA 1330
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1274 CCGGCGAAGTTCCGGCTAGGTTTTGGGAACTTCCTCTTACTCGTCTCGAGCTAGCCAACA 1333
Query 1331 ACAATCAATTACAAGGTTCGATTCCTCCTTCGATTTCCAAAGCTCGTCATCTATCTCAGC 1390
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 ACAATCAATTAGAAGGTTCGATTCCTCCTTCGATTTCCAAAGCTCGTCATCTATCTCAGC 1393
Query 1391 TTGAAATCTCCGCTAACAACTTCTCCGGTGTGATTCCCGTCAAACTTTGTGATCTCCGTG 1450
| |||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1394 TCGAAATCTCCGATAACAACTTCTCCGGTGTGATTCCCGTCAAAATCTGTGATCTCCGTG 1453
Query 1451 ATCTCAGAGTCATCGATCTTAGCCGCAACAGTTTCTTAGGATCAATTCCGTCTTGCATCA 1510
||||||||||||||||||||||||||||| |||||| ||| | ||||| |||||||||
Sbjct 1454 ATCTCAGAGTCATCGATCTTAGCCGCAACCGTTTCTCAGGCCCTCTTCCGCCTTGCATCA 1513
Query 1511 ACAAATTGAAGAATCTAGAGAGAGTAGAGATGCAGGAGAACATGCTCGACGGCGAGATTC 1570
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1514 ACAAATTGAAGAATCTAGAGAGATTGGAGATGCAGGAGAACATGCTCGACGGCGAGATTC 1573
Query 1571 CGAGTTCAGTGAGTTCGTGCACCGAGTTAACCGAATTAAATCTCTCCAACAACCGTTTAC 1630
| ||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||
Sbjct 1574 CTAGTTCAGTGAGTTCGTGCACCGAGTTAGCCGAGTTAAATCTCTCGAACAACCGTTTAC 1633
Query 1631 GAGGCGGGATACCACCGGAACTCGGTGATTTACCGGTTTTAAACTACCTGGATCTCTCTA 1690
| ||||| || |||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 1634 GCGGCGGAATTCCACCGGAGCTCGGTGATTTACCGGTTTTAAACTATCTGGATCTCTCCA 1693
Query 1691 ACAACCAACTCACCGGTGAGATTCCGGCGGAGCTGTTGAGGCTCAAGCTTAATCAATTCA 1750
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1694 ACAACCAACTCACCGGTGAGATTCCGGCGGAGCTGTTGAGGCTGAAGCTTAATCAATTCA 1753
Query 1751 ACGTCTCCGATAACAAACTCTATGGTAAGATTCCTTCTGGATTTCAGCAAGATATTTTTC 1810
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1754 ACGTCTCCGATAACAAACTCTACGGTAAGATCCCTTCTGGATTTCAGCAAGATATTTTTC 1813
Query 1811 GACCCAGTTTCTTAGGTAACCCGAATCTCTGTGCCCCAAATTTGGATCCGATTAGACCTT 1870
||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1814 GACCCAGTTTCTTGGGTAACCCGAATCTCTGTGCCCCGAATTTGGATCCGATTCGACCTT 1873
Query 1871 GCCGATCCAAACGGGAAACCCGGTACATTCTCCCAATCTCAATCCTCTGCATCGTTGCAC 1930
|||||||||||| |||||||||||||| || || |||||| |||||||||||||||
Sbjct 1874 GCCGATCCAAACCAGAAACCCGGTACATCCTTGTGATATCAATCATCTGCATCGTTGCAC 1933
Query 1931 TAACCGGAGCTTTGGTTTGGCTATTCATCAAAACCAAACCGTTATTCAAGAGAAAACCGA 1990
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1934 TAACCGGAGCTTTGGTTTGGCTGTTCATCAAAACCAAACCGTTATTCAAGAGAAAACCGA 1993
Query 1991 AACGGACCAACAAAATAACCATCTTCCAGCGGGTCGGGTTCACGGAGGAAGACATATACC 2050
|||||||||| ||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1994 AACGGACCAATAAAATAACCATTTTTCAACGGGTCGGGTTCACGGAGGAAGACATATACC 2053
Query 2051 CGCAATTAACAGAAGATAACATAATTGGGTCGGGCGGGTCGGGTTTGGTTTATAGAGTGA 2110
||||||||||||||||||||||||| || || |||||||||||||||||||| ||||| |
Sbjct 2054 CGCAATTAACAGAAGATAACATAATCGGATCAGGCGGGTCGGGTTTGGTTTACAGAGTAA 2113
Query 2111 AACTCAAATCAGGTCAAACGCTTGCGGTGAAGAAACTCTGGGGAGAAACGGGTCAAAAAA 2170
|||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||
Sbjct 2114 AACTCAAATCAGGTCAAACGCTTGCGGTTAAGAAACTCTGGGGAGGATCGGGTCAAAAGC 2173
Query 2171 CGGAATCTGAATCTGTTTTTCGATCCGAAGTAGAGACGT-TGGGTCGGGTCAGACATGGA 2229
| ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 2174 CCGAATCCGAATCTGTTTTTCGATCCGAAGTAGAGAC-TCTGGGTCGGGTCAGACATGGA 2232
Query 2230 AACATCGTGAAACTTCTTATGTGCTGCAACGGCGAGGAGTTTCGGTTCTTAGTGTACGAG 2289
||||||||||| || || |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 2233 AACATCGTGAAGCTACTCATGTGCTGCAACGGAGAGGAGTTTCGGTTCTTAGTATACGAG 2292
Query 2290 TTCATGGAAAACGGCAGCTTAGGTGACGTTTTGCATTCGGAGAAAGAACATCGTGCCGTT 2349
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 2293 TTCATGGAAAACGGAAGTTTGGGTGACGTTTTGCATTCGGAGAAAGAACATCGTGCCGTT 2352
Query 2350 TCTCCACTTGATTGGACGACACGATTTTCGATCGCGGTTGGTGCTGCTCAAGGACTTTCT 2409
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2353 TCTCCGCTTGATTGGACGACACGATTTTCGATCGCGGTTGGTGCTGCTCAAGGACTTTCT 2412
Query 2410 TATCTACATCATGACTCTGTTCCGCCTATTGTTCACCGTGACGTCAAAAGCAATAATATA 2469
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2413 TATCTACATCATGACTCTGTTCCGCCGGTTGTTCACCGTGACGTCAAAAGCAATAATATA 2472
Query 2470 TTGTTGGACCATGAGATGAAGCCACGTGTCGCCGA-TTTCGGTTTAGCTAAACCGTTGAA 2528
|||||||||||||||||||||||||||||||| || ||| |||||||||||| | |||||
Sbjct 2473 TTGTTGGACCATGAGATGAAGCCACGTGTCGCGGACTTT-GGTTTAGCTAAATCATTGAA 2531
Query 2529 GAGAGAAGACAATGATGGTGTCTCCGATG-TT-T-CAATGTCTTGTGTTGCTGGATCCTA 2585
|||||||||||||||||||||||||||| || | | |||||||||||||||||||||||
Sbjct 2532 CAGAGAAGACAATGATGGTGTCTCCGATGTTTCTCCCATGTCTTGTGTTGCTGGATCCTA 2591
Query 2586 CGGCTACATTGCTCCGGAATATGGTTATACGTCAAAAGTGAATGAGAAGAGCGATGTCTA 2645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2592 CGGCTACATTGCTCCGGAATATGGTTATACGTCAAAAGTGAATGAGAAGAGCGATGTCTA 2651
Query 2646 TAGCTTCGGGGTGGTTTTACTCGAACTGATTACGGGAAAAAGACCGAACGATTCGTCTTT 2705
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 2652 TAGCTTCGGGGTGGTTTTACTCGAATTGATTACCGGAAAAAGACCGAACGATTCGTCTTT 2711
Query 2706 TGGGGAGAATAAGGACATTGTTAAGTTTGCAATGGAAGCAGCTTTGTGTTACCCTTCTCC 2765
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2712 TGGGGAGAATAAGGATATTGTTAAGTTTGCAATGGAAGCAGCTTTGTGTTACCCTTCTCC 2771
Query 2766 ATCAGCAGAAGACGGAGCCATGAATCAAGATTCACTTGGAAACTATCGAGATCTTAGCAA 2825
||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||
Sbjct 2772 ATCAGCAGAAGACGGAGCCATGAATCAAGATTCACCTGGAAATTATCGAGACCTTAGCAA 2831
Query 2826 GCTTGTTGATCCAAAGATGAAACTTTCGACGAGAGAGTATGAAGAGATAGAGAAAGTTCT 2885
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 2832 AATTGTGGATCCAAAGATGAAACTTTCGACGAGAGAATATGAAGAGATAGAAAAAGTTCT 2891
Query 2886 TGACGTTGCATTGCTCTGTACGTCGTCTTTTCCTATCAACAGGCCGACCATGAGGAAAGT 2945
||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 2892 TGACGTTGCATTGCTTTGTACGTCGTCGTTTCCGATTAACAGGCCGACCATGAGGAAAGT 2951
Query 2946 AGTAGAGTTGCTTAAAGAGAAGAAATCACTAGAGTGA 2982
|||||||||||||||||||||||| ||||||||||||
Sbjct 2952 AGTAGAGTTGCTTAAAGAGAAGAAGTCACTAGAGTGA 2988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112594764220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5