BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65730.1
Length=1115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496809 jgi|Araly1|496809|fgenesh2_kg.8__2625__AT5G65730.1 1676 0.0
> Ahg496809 jgi|Araly1|496809|fgenesh2_kg.8__2625__AT5G65730.1
Length=1049
Score = 1676 bits (907), Expect = 0.0
Identities = 1004/1050 (96%), Gaps = 10/1050 (1%)
Strand=Plus/Plus
Query 49 ATGGCTAAGATATATTCCCCTTCTTTTCCCGGTACTCTCTGTCTTTGCATTTTTACTCTC 108
||||||||||||| ||||||||||||||||| ||||| || ||||| |||||| ||||||
Sbjct 1 ATGGCTAAGATATGTTCCCCTTCTTTTCCCGATACTCCCTTTCTTTACATTTTCACTCTC 60
Query 109 TTGAC-GCTAATGTTCATTCGGGTTTCCGCTCGACCCGCGACATTCGTCGAGGATTTCAA 167
|| || | |||||||||||||| |||||||||| ||||||||||||||||| ||||||||
Sbjct 61 TTTACAG-TAATGTTCATTCGGATTTCCGCTCGGCCCGCGACATTCGTCGATGATTTCAA 119
Query 168 AGCCGCCTGGTCGGAATCTCACATCCGTCAAATGGAAGACGGAAAAGCTATCCAGCTCGT 227
|||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 120 AGCCGCGTGGTCGGAATCTCACATCCGTCAAATGGACGGTGGAAAAGCTATCCAGCTCGT 179
Query 228 CCTTGATCAGAGCACTGGATGTGGATTTGCTTCCAAAAGAAAATATCTATTCGGACGAGT 287
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 180 CCTTGATCAGAGCACTGGATGTGGATTTGCTTCCAAAAGAAAGTATTTATTCGGACGAGT 239
Query 288 GAGCATGAAGATCAAACTCATTCCCGGAGACTCTGCCGGTACGGTCACCGCTTTCTACAT 347
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 GAGCATGAAGATCAAACTCATTCCAGGAGACTCTGCCGGTACGGTCACCGCTTTCTACAT 299
Query 348 GAACTCCGATACGGCCACGGTGAGAGACGAGCTAGATTTTGAGTTCTTGGGAAACAGAAG 407
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 GAACTCCGATACGGCCACGGTGAGAGACGAGCTAGATTTCGAGTTCTTGGGAAACAGAAG 359
Query 408 TGGTCAACCTTACTCAGTGCAAACAAACATATTTGCTCATGGCAAAGGAGATAGAGAACA 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGGTCAACCTTACTCAGTGCAAACAAACATATTTGCTCATGGCAAAGGAGATAGAGAACA 419
Query 468 AAGAGTTAATCTTTGGTTCGACCCATCTATGGATTACCACACTTACACTATCTTATGGTC 527
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 AAGAGTTAATCTTTGGTTCGACCCATCTTTGGATTACCACACTTACACTATCTTATGGTC 479
Query 528 ACACAAACACATTGTTTTTTACGTAGACGATGTGCCAATAAGAGAATACAAAAACAACGA 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACACAAACACATTGTTTTTTACGTAGACGATGTGCCAATAAGAGAATACAAAAACAACGA 539
Query 588 AGCCAAGAACATAGCTTACCCAACATCACAACCTATGGGAGTATACTCAACATTATGGGA 647
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 AGCCAAGAACATTGCTTACCCAACATCACAACCTATGGGAGTTTACTCAACATTATGGGA 599
Query 648 AGCAGATGACTGGGCAACACGTGGTGGATTAGAGAAAATTGATTGGAGCAAAGCTCCATT 707
||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 600 AGCCGATGACTGGGCGACACGTGGCGGATTAGAGAAAATTGATTGGAGCAAAGCTCCGTT 659
Query 708 TTATGCTTATTACAAAGATTTCGACATCGAAGGTTGTCCTGTTCCTGGACCAACCTTTTG 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTATGCTTATTACAAAGATTTCGACATCGAAGGTTGTCCTGTTCCTGGACCAACCTTTTG 719
Query 768 TCCATCGAACCCTCATAATTGGTGGGAAGGTTATGCCTATCAGTCTCTTAACGCCGTTGA 827
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 720 TCCATCGAACCCTCACAATTGGTGGGAAGGTTATGCCTATCAGTCTCTTAACGCCCTCGA 779
Query 828 AGCTCGACGTTACCGGTGGGTTAGAGTAAACCATATGGTTTATGATTATTGTACTGACCG 887
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 780 AGCTCGACGTTACCGGTGGGTTAGAGTAAACCATATGGTTTATGATTATTGTACCGACCG 839
Query 888 GTCTAGGTTTCCTGTCCCACCACCCGAGTGTCGTGCTTGAAAATAATTGCATA----CGT 943
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 840 GTCTAGGTTTCCTGTCCCACCACCCGAGTGTCGTGCTTGAAAATAATTCCATATATACGT 899
Query 944 ACGTTGCAATGATCATGTTTCGTCTTGTACGAGATTTTATATATA-A--A-TTGTGGGAA 999
||||| |||||||||||||||||||||||||| |||||||||||| | | |||||||||
Sbjct 900 ACGTTACAATGATCATGTTTCGTCTTGTACGATATTTTATATATATATTAATTGTGGGAA 959
Query 1000 AATGTGGATTGTATTGTCCTCTTACGCAATTGTGCAGACGTACGTGAGTGTGTATAGATA 1059
|||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||
Sbjct 960 AATGTGGATTGTATTGTCCTCTTATGCAATTGTGCAGACGTACGTGAGTATATATAGATA 1019
Query 1060 TAATTGTGATTTGTGGTTATTTGAAATTTT 1089
|||||||||||||||||||||||||| |||
Sbjct 1020 TAATTGTGATTTGTGGTTATTTGAAAATTT 1049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41553979530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5