BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G65740.2 Length=1161 Score E Sequences producing significant alignments: (Bits) Value Ahg496810 jgi|Araly1|496810|fgenesh2_kg.8__2626__AT5G65740.2 1596 0.0 > Ahg496810 jgi|Araly1|496810|fgenesh2_kg.8__2626__AT5G65740.2 Length=1249 Score = 1596 bits (864), Expect = 0.0 Identities = 1030/1110 (93%), Gaps = 12/1110 (1%) Strand=Plus/Plus Query 50 ATGATGAATGTTTCTGGAGAATGTGTAGGCCGTGAAAGATGCGAGGAATTAGCCAAGTCT 109 |||||||| | ||||||||||||| |||| ||||||||||||||||||||||| |||||| Sbjct 1 ATGATGAAGGGTTCTGGAGAATGTATAGGACGTGAAAGATGCGAGGAATTAGCAAAGTCT 60 Query 110 TCTTCGTTTTACCGGAAAGTTTACTCGGAGATAGAAGAAATTGGATGGGAACCAATAAGG 169 ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 61 TCTTCTTTTTACCGGAAAGTTTACTCGGAGATAGAGGAAATTGGATGGGAACCGCTAAGG 120 Query 170 AGATTAGGTGGAGATTTAACGTTTTTTAGCTTTCACATTCTAGATAAGAAGGGAAGAGCT 229 |||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| Sbjct 121 AGATTAGGTGGAGATTTAACGTTTTTCAGCTTTCAGATTTTAGATAAGAAGGGAAGAGCA 180 Query 230 CACAACTTAGAAATTCAACTGAACAGAGACTATCCTAATTCACCACCTTCTGTTTCTGCG 289 |||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 181 CACAACTTAGAATTTCAACTGAACAGAGACTATCCTAATTCCCCACCTTGTGTTTCTGCG 240 Query 290 GATGTGCCATATATGTTTACACTAGAATGGTCAACAAGTTCAAGATTGAAGGATGTAATG 349 |||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||| Sbjct 241 GATGTGCCATATATGTTTACTTTAGAATGGTCAACAAGTTCAAGGTTGAAGGATGTGATG 300 Query 350 CACCAATTCCAAAAGCATTTGGACTATCTTCAAGAATTTTGGTCTGTCTTGGACAATATC 409 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 301 TACCAATTCCAAAAGCATTTGGACTATCTTCAAGAATTTTGGTCTGTCTTGGACGATATC 360 Query 410 GATAAATCTCTATGTGTTGTTGATGTCAAGCAACCAGCTCGTGCCTCTGCTATTCGCCGG 469 ||||||||||| ||||||||||||| ||| |||||| |||| ||||| ||||| |||||| Sbjct 361 GATAAATCTCTCTGTGTTGTTGATGCCAAACAACCATCTCGCGCCTCCGCTATCCGCCGG 420 Query 470 ATTGATGCTGGGAATGATTGTATCATCATTGTTCATATCGACTTCAAAGACCCTAAATCC 529 ||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 421 ATTCATGCTGGGAATGATTGCATCATCATTGTTCATATCGACTTGAAAGACCCTAAATCC 480 Query 530 CTACCAGAGTCCCGGTTTATTGGTCCTGTGCCTTCAGCTACGCATATGAACAACTTGCAT 589 |||||||| | |||||||||||||||||||||| |||||||||||||||||| ||| ||| Sbjct 481 CTACCAGAATGCCGGTTTATTGGTCCTGTGCCTCCAGCTACGCATATGAACATCTTACAT 540 Query 590 ATGTTATGGAGAAGAAATTGCAAAAGATGGTCAAATGAAAGATCATTTCCTGAGAACCTT 649 |||||||||||||||||| |||||| ||||||||| |||||| |||||||||| ||||| Sbjct 541 ATGTTATGGAGAAGAAATAGCAAAAAATGGTCAAAGGAAAGACCATTTCCTGAAAACCTC 600 Query 650 GAATGTATTCTAGGTACTGAGCTTCCAAAGCCTCTAGGTCTCCAAGTGGAAGACGATCAA 709 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 601 GAATGTATTCTAGGTACTGAGCTTCCAAAGCCTCTAGGTCTCCAAGAGGAAGACAATCAA 660 Query 710 CAACAAGTTGAATGTGGGATTTGCTATGCGCAGTTTCTACCCACCGATGAGGAGCTCGGA 769 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CAACAAGTTGAATGTGGAATTTGCTATGCGCAGTTTCTACCCACCGATGAGGAGCTCGGA 720 Query 770 GCTAGAAGTGGGACACGAACAGATTACACATGTGAAAACATCAGTTGCAACAAGTCTTTC 829 |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 721 GCTAGAAGTGGGACGCGAACAGATTACACATGTGAGAACATCAGTTGCAACAAGTCTTTC 780 Query 830 CATAGCCTCTGCCTCACAGACTGGTTAAGGTCTATCACAACAACAAGACAGTCATTTGAT 889 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 CATAGCCTTTGCCTCACAGACTGGTTAAGGTCTATCACAACAACAAGACAGTCATTTGAT 840 Query 890 GTTCTGTTTGGGAACTGCCCTTATTGTTCAGACCCAGTTGCAGTCAAAACCAGCAACAAA 949 ||||||||||||||||| |||||||||||||||||||| |||||||||| || |||| | Sbjct 841 GTTCTGTTTGGGAACTGTCCTTATTGTTCAGACCCAGTGGCAGTCAAAATCAACAACCAT 900 Query 950 TAGAGTTAGACAAACCATCATCCTAATTAGCTGATATCTGAATGTTGTAATGAAACGTGA 1009 | || || || || | | ||||||||||||| |||||| ||| ||||||||| ||| Sbjct 901 TTGA---AGCCATAC--T--TGCTAATTAGCTGAT-TCTGAAAGTTCTAATGAAACATGA 952 Query 1010 TACAAAGAGAAGAGTTAGTACAGTAATGAGTAGTAGTAGTAAGTGAGGACAAAAGTTCCT 1069 |||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||| Sbjct 953 TACAAAGAGAAGAGTTAGTACAGTGATGAGTAGTAGTA--A-GTGAGGACAAAAGTTCCT 1009 Query 1070 TTTTACTATTTTTCTTCTGTACGTTTAAGATAAGACTCATGTAGCTTTCAAATAAGAGAT 1129 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 1010 TTTTACTATTTTTCTTCTGTACGTTTAAGATAAGACCCATGTAGCTTTCAAATAAGAAAG 1069 Query 1130 GTGAATGTACCTTGtttttttCTTTTGTGG 1159 ||||||||||||| |||||| |||| |||| Sbjct 1070 GTGAATGTACCTTCTTTTTTCCTTT-GTGG 1098 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43307633712 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5