BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65740.2
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496810 jgi|Araly1|496810|fgenesh2_kg.8__2626__AT5G65740.2 1596 0.0
> Ahg496810 jgi|Araly1|496810|fgenesh2_kg.8__2626__AT5G65740.2
Length=1249
Score = 1596 bits (864), Expect = 0.0
Identities = 1030/1110 (93%), Gaps = 12/1110 (1%)
Strand=Plus/Plus
Query 50 ATGATGAATGTTTCTGGAGAATGTGTAGGCCGTGAAAGATGCGAGGAATTAGCCAAGTCT 109
|||||||| | ||||||||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct 1 ATGATGAAGGGTTCTGGAGAATGTATAGGACGTGAAAGATGCGAGGAATTAGCAAAGTCT 60
Query 110 TCTTCGTTTTACCGGAAAGTTTACTCGGAGATAGAAGAAATTGGATGGGAACCAATAAGG 169
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 61 TCTTCTTTTTACCGGAAAGTTTACTCGGAGATAGAGGAAATTGGATGGGAACCGCTAAGG 120
Query 170 AGATTAGGTGGAGATTTAACGTTTTTTAGCTTTCACATTCTAGATAAGAAGGGAAGAGCT 229
|||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||
Sbjct 121 AGATTAGGTGGAGATTTAACGTTTTTCAGCTTTCAGATTTTAGATAAGAAGGGAAGAGCA 180
Query 230 CACAACTTAGAAATTCAACTGAACAGAGACTATCCTAATTCACCACCTTCTGTTTCTGCG 289
|||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 181 CACAACTTAGAATTTCAACTGAACAGAGACTATCCTAATTCCCCACCTTGTGTTTCTGCG 240
Query 290 GATGTGCCATATATGTTTACACTAGAATGGTCAACAAGTTCAAGATTGAAGGATGTAATG 349
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||
Sbjct 241 GATGTGCCATATATGTTTACTTTAGAATGGTCAACAAGTTCAAGGTTGAAGGATGTGATG 300
Query 350 CACCAATTCCAAAAGCATTTGGACTATCTTCAAGAATTTTGGTCTGTCTTGGACAATATC 409
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 TACCAATTCCAAAAGCATTTGGACTATCTTCAAGAATTTTGGTCTGTCTTGGACGATATC 360
Query 410 GATAAATCTCTATGTGTTGTTGATGTCAAGCAACCAGCTCGTGCCTCTGCTATTCGCCGG 469
||||||||||| ||||||||||||| ||| |||||| |||| ||||| ||||| ||||||
Sbjct 361 GATAAATCTCTCTGTGTTGTTGATGCCAAACAACCATCTCGCGCCTCCGCTATCCGCCGG 420
Query 470 ATTGATGCTGGGAATGATTGTATCATCATTGTTCATATCGACTTCAAAGACCCTAAATCC 529
||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 421 ATTCATGCTGGGAATGATTGCATCATCATTGTTCATATCGACTTGAAAGACCCTAAATCC 480
Query 530 CTACCAGAGTCCCGGTTTATTGGTCCTGTGCCTTCAGCTACGCATATGAACAACTTGCAT 589
|||||||| | |||||||||||||||||||||| |||||||||||||||||| ||| |||
Sbjct 481 CTACCAGAATGCCGGTTTATTGGTCCTGTGCCTCCAGCTACGCATATGAACATCTTACAT 540
Query 590 ATGTTATGGAGAAGAAATTGCAAAAGATGGTCAAATGAAAGATCATTTCCTGAGAACCTT 649
|||||||||||||||||| |||||| ||||||||| |||||| |||||||||| |||||
Sbjct 541 ATGTTATGGAGAAGAAATAGCAAAAAATGGTCAAAGGAAAGACCATTTCCTGAAAACCTC 600
Query 650 GAATGTATTCTAGGTACTGAGCTTCCAAAGCCTCTAGGTCTCCAAGTGGAAGACGATCAA 709
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 601 GAATGTATTCTAGGTACTGAGCTTCCAAAGCCTCTAGGTCTCCAAGAGGAAGACAATCAA 660
Query 710 CAACAAGTTGAATGTGGGATTTGCTATGCGCAGTTTCTACCCACCGATGAGGAGCTCGGA 769
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CAACAAGTTGAATGTGGAATTTGCTATGCGCAGTTTCTACCCACCGATGAGGAGCTCGGA 720
Query 770 GCTAGAAGTGGGACACGAACAGATTACACATGTGAAAACATCAGTTGCAACAAGTCTTTC 829
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 721 GCTAGAAGTGGGACGCGAACAGATTACACATGTGAGAACATCAGTTGCAACAAGTCTTTC 780
Query 830 CATAGCCTCTGCCTCACAGACTGGTTAAGGTCTATCACAACAACAAGACAGTCATTTGAT 889
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CATAGCCTTTGCCTCACAGACTGGTTAAGGTCTATCACAACAACAAGACAGTCATTTGAT 840
Query 890 GTTCTGTTTGGGAACTGCCCTTATTGTTCAGACCCAGTTGCAGTCAAAACCAGCAACAAA 949
||||||||||||||||| |||||||||||||||||||| |||||||||| || |||| |
Sbjct 841 GTTCTGTTTGGGAACTGTCCTTATTGTTCAGACCCAGTGGCAGTCAAAATCAACAACCAT 900
Query 950 TAGAGTTAGACAAACCATCATCCTAATTAGCTGATATCTGAATGTTGTAATGAAACGTGA 1009
| || || || || | | ||||||||||||| |||||| ||| ||||||||| |||
Sbjct 901 TTGA---AGCCATAC--T--TGCTAATTAGCTGAT-TCTGAAAGTTCTAATGAAACATGA 952
Query 1010 TACAAAGAGAAGAGTTAGTACAGTAATGAGTAGTAGTAGTAAGTGAGGACAAAAGTTCCT 1069
|||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||
Sbjct 953 TACAAAGAGAAGAGTTAGTACAGTGATGAGTAGTAGTA--A-GTGAGGACAAAAGTTCCT 1009
Query 1070 TTTTACTATTTTTCTTCTGTACGTTTAAGATAAGACTCATGTAGCTTTCAAATAAGAGAT 1129
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1010 TTTTACTATTTTTCTTCTGTACGTTTAAGATAAGACCCATGTAGCTTTCAAATAAGAAAG 1069
Query 1130 GTGAATGTACCTTGtttttttCTTTTGTGG 1159
||||||||||||| |||||| |||| ||||
Sbjct 1070 GTGAATGTACCTTCTTTTTTCCTTT-GTGG 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43307633712
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5