BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G65760.1 Length=1718 Score E Sequences producing significant alignments: (Bits) Value Ahg496814 jgi|Araly1|496814|fgenesh2_kg.8__2630__AT5G65760.1 2525 0.0 > Ahg496814 jgi|Araly1|496814|fgenesh2_kg.8__2630__AT5G65760.1 Length=1682 Score = 2525 bits (1367), Expect = 0.0 Identities = 1590/1695 (94%), Gaps = 25/1695 (1%) Strand=Plus/Plus Query 33 AGTTATGGCGAGCCATTTTTGCTTGCTTCTGATCTTCACTTTCTTCACTCTAGTGTTTCC 92 ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 AGTTATGGCGAACCATTTTTGCTTGCTTCTGATCTTCACTTTCTTCACTCTATTGTTTCC 60 Query 93 GTCAAACGGATCTTCACTGTCTTCTTCCAAGCTTTTACCTCGTTTCCCTCGCTACACTTT 152 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GTCAAACGGATCGTCACTGTCTTCTTCCAAGCTTTTACCTCGTTTCCCTCGCTACACTTC 120 Query 153 CCAGAACCGAGAAGCCAGAATCCAGCAGTTCCGGGGAGATCGAAACGAGTATCGATACGA 212 || ||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 121 CCGGAACC--G-AGCCAGAATCCAGCAGTTCCGGGGAGATCGAAACGAGTACCGATACGA 177 Query 213 GACTAAGTTCTTCTCACAGCAGCTGGACCACTTCAGCTTCGCCGATCTTCCCAAA-TTCT 271 ||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||| Sbjct 178 GACTAAGTTCTTCTCTCAGCAGCTTGACCACTTCAGCTTCGCCGATCTTCCCAAATTTC- 236 Query 272 CTCAACGCTACCTCATCAATTCCGATCACTGGCTTGGTGCTTCTGCGCTTGGACCTATCT 331 | ||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 237 CGCAACGCTACTTGATCAATTCCGATTACTGGCTTGGTGCTTCTGCGCTTGGACCTATCT 296 Query 332 TCCTTTACTGCGGCAACGAAGGTGATATTGAATGGTTTGCTACAAACTCTGGATTCATTT 391 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 297 TCCTATACTGCGGCAACGAAGGTGATATTGAGTGGTTTGCTACAAACTCTGGATTCATTT 356 Query 392 GGGATATCGCTCCCAAGTTCGGTGCCTTGCTTGTTTTCCCCGAGCATAGGTATTATGGAG 451 |||||||||||||||||||||||||||||||||||||||| ||| | | | | | | Sbjct 357 GGGATATCGCTCCCAAGTTCGGTGCCTTGCTTGTTTTCCCTGAGGTTCGTTCGTGTTTAT 416 Query 452 AGTCTATGCCTTATGGAAGCAGGGAAGAAGCTTACAAGAACGCTACCACTTTATCATATC 511 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 417 TTTGTATGCCTTATGGAAGCATGGAAGAAGCTTACAAGAACGCTACCACTTTATCATATC 476 Query 512 TCACTACTGAGCAAGCTCTTGCTGATTTTGCTGTTTTTGTCACTGATTTGAAACGCAACT 571 |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 477 TCACAACTGAACAAGCTCTGGCTGATTTTGCTGTTTTTGTCACTGATTTGAAACGCAACT 536 Query 572 TGTCTGCGGAAGCTTGCCCAGTTGTGTTGTTTGGTGGATCATATGGTGGAATGTTAGCAG 631 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 TGTCTGCCGAAGCTTGCCCAGTTGTGTTGTTTGGTGGATCATATGGTGGAATGTTAGCAG 596 Query 632 CATGGATGAGGCTCAAGTATCCTCACATTGCAATAGGAGCTTTAGCTTCCTCAGCTCCAA 691 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 597 CATGGATGAGGCTCAAGTATCCTCACATTGCAATTGGAGCTTTAGCTTCCTCAGCTCCAA 656 Query 692 TTCTTCAGTTTGAAGATGTTGTACCTCCTGAGACGTTCTATGACATTGCATCAAATGATT 751 ||||||||||||||||| ||||||| ||||||||||| || ||||||||||| ||||||| Sbjct 657 TTCTTCAGTTTGAAGATATTGTACCCCCTGAGACGTTTTACGACATTGCATCCAATGATT 716 Query 752 TCAAGCGTGAGAGTAGCAGCTGCTTCAATACCATTAAGGACTCGTGGGATGCAATAATAG 811 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 717 TCAAGCGTGAGAGTAGCAGCTGCTTCAACACCATTAAGGACTCGTGGGATGCAATAATAG 776 Query 812 CAGAGGGTCAGAAGGAAAATGGCCTTCTGCAGTTGACGAAAACTTTTCACTTTTGCCGGG 871 |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||| Sbjct 777 CAGAGGGTCAGAAGGAGAATGGCCTTCTGCAATTGACGAAAACTTTTCACTTTTGTCGGG 836 Query 872 TGTTGAACAGTACTGATGACCTTTCAGACTGGCTGGACTCTGCCTATAGTTATTTGGCAA 931 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 837 TGTTGAACAGTACTGATGACCTTTCAGACTGGCTGGACTCTGCTTATAGTTATTTGGCAA 896 Query 932 TGGTGGATTATCCGTATCCTGCTGACTTCATGATGCCTTTGCCTGGACATCCCATTAGAG 991 ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| Sbjct 897 TGGTGGATTATCCGTATCCCGCAGACTTCATGATGCCTTTGCCTGGAAATCCCATTAGAG 956 Query 992 AGGTCTGCAGAAAAATTGACGGTGCTGGTAGTAATGCTAGCATCCTAGATCGCATATATG 1051 ||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| Sbjct 957 AGGTCTGCAGAAAAATTGATGGTGCTCATAGTGATGCTAGCATCCTAGATCGCATATATG 1016 Query 1052 CAGGGATAAGTGTGTACTACAACTATACTGGAAATGTTGACTGCTTCAAGTTGGATGATG 1111 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1017 CAGGAATAAGTGTGTACTATAACTATACTGGAAATGTTGACTGCTTCAAGTTGGATGATG 1076 Query 1112 ACCCTCATGGGTTGGATGGATGGAATTGGCAGGCATGCACGGAGATGGTAATGCCCATGT 1171 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 ACCCTCATGGTTTGGATGGATGGAATTGGCAGGCATGCACGGAGATGGTAATGCCCATGT 1136 Query 1172 CTAGCAACCAAGAAAACAGCATGTTTCCAGGTTATGGTTTTAATTACTCTTCATACAAAG 1231 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1137 CTAGCAACCAAGAAAACAGCATGTTTCCAGCTTATGATTTTAATTACTCTTCATACAAAG 1196 Query 1232 AGGAATGCTGGAATACATTCCGAGTTAATCCAAGACCCAAATGGGTCACAACAGAGTTCG 1291 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1197 AGGAATGCTGGAATACATTCCGAGTCAATCCAAGACCCAAATGGGTCACAACAGAGTTTG 1256 Query 1292 GTGGACATGATATAGCGACCACCTTGAAGTCATTTGGAAGTAACATCATTTTCTCAAATG 1351 ||||||||||||| | ||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 1257 GTGGACATGATATTGAGACCACCCTGAAGTCGTTTGGAAGTAACATCATTTTCTCAAATG 1316 Query 1352 GTCTGTTAGATCCTTGGAGTGGTGGCAGTGTTCTCAAGAACTTATCTGATACCATTGTTG 1411 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1317 GTCTGTTAGATCCTTGGAGTGGTGGCAGTGTTCTCAAGAACTTATCCAATACCATTGTTG 1376 Query 1412 CTCTCGTCACAAAAGAAGGTGCACATCACTTGGATCTACGACCTTCAACACCAGAAGACC 1471 |||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 1377 CTCTTGTCACAAAAGAAGGTGCACATCACTTGGATTTACGACCTTCAACAGCAGAAGACC 1436 Query 1472 CGAAATGGCTTGTGGACCAGCGGGAAGCCGAGATACGGTTGATTCAAGGATGGATCGAAA 1531 |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| Sbjct 1437 CGAAATGGCTTGTGGACCAGCGAGAAGCGGAGATACGGTTGATTCAAGGATGGATAGAAA 1496 Query 1532 CTTATCGAGTAGAAAAAGAAGCTAAGGTTTCTCTGTTAAAACGTTCTTGGTAAGAGAACA 1591 |||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 1497 CTTATCGACTAGAAAAAGAAGCTAAGGTTTCGCTCTTAAAACGTTCTTGGTAAGAGAACA 1556 Query 1592 ATGAAAAGAATCGTCTCAGTGTGT-----A--A--CTCGGAATCTGCAAACTTTGTATTG 1642 ||| |||||||||||||||||||| | | || ||||||||||||||||||||| Sbjct 1557 ATGTAAAGAATCGTCTCAGTGTGTTTTCCACGAAACTTAGAATCTGCAAACTTTGTATTG 1616 Query 1643 CGAACACAT--GCTTTGAATAAATCCATGTAACTATGTAAACTCTCAATGATCACTAATC 1700 ||||||| | ||||||||||| ||||||| | ||||||||||||||||||| Sbjct 1617 T-AACACATCTGGTTTGAATAAATTCATGTAA----G----CTCTCAATGATCACTAATC 1667 Query 1701 TTTTCTACTAGCTTA 1715 ||||||||| ||||| Sbjct 1668 TTTTCTACTTGCTTA 1682 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64448694540 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5