BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65760.1
Length=1718
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496814 jgi|Araly1|496814|fgenesh2_kg.8__2630__AT5G65760.1 2525 0.0
> Ahg496814 jgi|Araly1|496814|fgenesh2_kg.8__2630__AT5G65760.1
Length=1682
Score = 2525 bits (1367), Expect = 0.0
Identities = 1590/1695 (94%), Gaps = 25/1695 (1%)
Strand=Plus/Plus
Query 33 AGTTATGGCGAGCCATTTTTGCTTGCTTCTGATCTTCACTTTCTTCACTCTAGTGTTTCC 92
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 AGTTATGGCGAACCATTTTTGCTTGCTTCTGATCTTCACTTTCTTCACTCTATTGTTTCC 60
Query 93 GTCAAACGGATCTTCACTGTCTTCTTCCAAGCTTTTACCTCGTTTCCCTCGCTACACTTT 152
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTCAAACGGATCGTCACTGTCTTCTTCCAAGCTTTTACCTCGTTTCCCTCGCTACACTTC 120
Query 153 CCAGAACCGAGAAGCCAGAATCCAGCAGTTCCGGGGAGATCGAAACGAGTATCGATACGA 212
|| ||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 CCGGAACC--G-AGCCAGAATCCAGCAGTTCCGGGGAGATCGAAACGAGTACCGATACGA 177
Query 213 GACTAAGTTCTTCTCACAGCAGCTGGACCACTTCAGCTTCGCCGATCTTCCCAAA-TTCT 271
||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||
Sbjct 178 GACTAAGTTCTTCTCTCAGCAGCTTGACCACTTCAGCTTCGCCGATCTTCCCAAATTTC- 236
Query 272 CTCAACGCTACCTCATCAATTCCGATCACTGGCTTGGTGCTTCTGCGCTTGGACCTATCT 331
| ||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 237 CGCAACGCTACTTGATCAATTCCGATTACTGGCTTGGTGCTTCTGCGCTTGGACCTATCT 296
Query 332 TCCTTTACTGCGGCAACGAAGGTGATATTGAATGGTTTGCTACAAACTCTGGATTCATTT 391
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 297 TCCTATACTGCGGCAACGAAGGTGATATTGAGTGGTTTGCTACAAACTCTGGATTCATTT 356
Query 392 GGGATATCGCTCCCAAGTTCGGTGCCTTGCTTGTTTTCCCCGAGCATAGGTATTATGGAG 451
|||||||||||||||||||||||||||||||||||||||| ||| | | | | | |
Sbjct 357 GGGATATCGCTCCCAAGTTCGGTGCCTTGCTTGTTTTCCCTGAGGTTCGTTCGTGTTTAT 416
Query 452 AGTCTATGCCTTATGGAAGCAGGGAAGAAGCTTACAAGAACGCTACCACTTTATCATATC 511
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 417 TTTGTATGCCTTATGGAAGCATGGAAGAAGCTTACAAGAACGCTACCACTTTATCATATC 476
Query 512 TCACTACTGAGCAAGCTCTTGCTGATTTTGCTGTTTTTGTCACTGATTTGAAACGCAACT 571
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TCACAACTGAACAAGCTCTGGCTGATTTTGCTGTTTTTGTCACTGATTTGAAACGCAACT 536
Query 572 TGTCTGCGGAAGCTTGCCCAGTTGTGTTGTTTGGTGGATCATATGGTGGAATGTTAGCAG 631
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGTCTGCCGAAGCTTGCCCAGTTGTGTTGTTTGGTGGATCATATGGTGGAATGTTAGCAG 596
Query 632 CATGGATGAGGCTCAAGTATCCTCACATTGCAATAGGAGCTTTAGCTTCCTCAGCTCCAA 691
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 597 CATGGATGAGGCTCAAGTATCCTCACATTGCAATTGGAGCTTTAGCTTCCTCAGCTCCAA 656
Query 692 TTCTTCAGTTTGAAGATGTTGTACCTCCTGAGACGTTCTATGACATTGCATCAAATGATT 751
||||||||||||||||| ||||||| ||||||||||| || ||||||||||| |||||||
Sbjct 657 TTCTTCAGTTTGAAGATATTGTACCCCCTGAGACGTTTTACGACATTGCATCCAATGATT 716
Query 752 TCAAGCGTGAGAGTAGCAGCTGCTTCAATACCATTAAGGACTCGTGGGATGCAATAATAG 811
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 717 TCAAGCGTGAGAGTAGCAGCTGCTTCAACACCATTAAGGACTCGTGGGATGCAATAATAG 776
Query 812 CAGAGGGTCAGAAGGAAAATGGCCTTCTGCAGTTGACGAAAACTTTTCACTTTTGCCGGG 871
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 777 CAGAGGGTCAGAAGGAGAATGGCCTTCTGCAATTGACGAAAACTTTTCACTTTTGTCGGG 836
Query 872 TGTTGAACAGTACTGATGACCTTTCAGACTGGCTGGACTCTGCCTATAGTTATTTGGCAA 931
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 837 TGTTGAACAGTACTGATGACCTTTCAGACTGGCTGGACTCTGCTTATAGTTATTTGGCAA 896
Query 932 TGGTGGATTATCCGTATCCTGCTGACTTCATGATGCCTTTGCCTGGACATCCCATTAGAG 991
||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||
Sbjct 897 TGGTGGATTATCCGTATCCCGCAGACTTCATGATGCCTTTGCCTGGAAATCCCATTAGAG 956
Query 992 AGGTCTGCAGAAAAATTGACGGTGCTGGTAGTAATGCTAGCATCCTAGATCGCATATATG 1051
||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||
Sbjct 957 AGGTCTGCAGAAAAATTGATGGTGCTCATAGTGATGCTAGCATCCTAGATCGCATATATG 1016
Query 1052 CAGGGATAAGTGTGTACTACAACTATACTGGAAATGTTGACTGCTTCAAGTTGGATGATG 1111
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CAGGAATAAGTGTGTACTATAACTATACTGGAAATGTTGACTGCTTCAAGTTGGATGATG 1076
Query 1112 ACCCTCATGGGTTGGATGGATGGAATTGGCAGGCATGCACGGAGATGGTAATGCCCATGT 1171
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 ACCCTCATGGTTTGGATGGATGGAATTGGCAGGCATGCACGGAGATGGTAATGCCCATGT 1136
Query 1172 CTAGCAACCAAGAAAACAGCATGTTTCCAGGTTATGGTTTTAATTACTCTTCATACAAAG 1231
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1137 CTAGCAACCAAGAAAACAGCATGTTTCCAGCTTATGATTTTAATTACTCTTCATACAAAG 1196
Query 1232 AGGAATGCTGGAATACATTCCGAGTTAATCCAAGACCCAAATGGGTCACAACAGAGTTCG 1291
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1197 AGGAATGCTGGAATACATTCCGAGTCAATCCAAGACCCAAATGGGTCACAACAGAGTTTG 1256
Query 1292 GTGGACATGATATAGCGACCACCTTGAAGTCATTTGGAAGTAACATCATTTTCTCAAATG 1351
||||||||||||| | ||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1257 GTGGACATGATATTGAGACCACCCTGAAGTCGTTTGGAAGTAACATCATTTTCTCAAATG 1316
Query 1352 GTCTGTTAGATCCTTGGAGTGGTGGCAGTGTTCTCAAGAACTTATCTGATACCATTGTTG 1411
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1317 GTCTGTTAGATCCTTGGAGTGGTGGCAGTGTTCTCAAGAACTTATCCAATACCATTGTTG 1376
Query 1412 CTCTCGTCACAAAAGAAGGTGCACATCACTTGGATCTACGACCTTCAACACCAGAAGACC 1471
|||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1377 CTCTTGTCACAAAAGAAGGTGCACATCACTTGGATTTACGACCTTCAACAGCAGAAGACC 1436
Query 1472 CGAAATGGCTTGTGGACCAGCGGGAAGCCGAGATACGGTTGATTCAAGGATGGATCGAAA 1531
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 1437 CGAAATGGCTTGTGGACCAGCGAGAAGCGGAGATACGGTTGATTCAAGGATGGATAGAAA 1496
Query 1532 CTTATCGAGTAGAAAAAGAAGCTAAGGTTTCTCTGTTAAAACGTTCTTGGTAAGAGAACA 1591
|||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1497 CTTATCGACTAGAAAAAGAAGCTAAGGTTTCGCTCTTAAAACGTTCTTGGTAAGAGAACA 1556
Query 1592 ATGAAAAGAATCGTCTCAGTGTGT-----A--A--CTCGGAATCTGCAAACTTTGTATTG 1642
||| |||||||||||||||||||| | | || |||||||||||||||||||||
Sbjct 1557 ATGTAAAGAATCGTCTCAGTGTGTTTTCCACGAAACTTAGAATCTGCAAACTTTGTATTG 1616
Query 1643 CGAACACAT--GCTTTGAATAAATCCATGTAACTATGTAAACTCTCAATGATCACTAATC 1700
||||||| | ||||||||||| ||||||| | |||||||||||||||||||
Sbjct 1617 T-AACACATCTGGTTTGAATAAATTCATGTAA----G----CTCTCAATGATCACTAATC 1667
Query 1701 TTTTCTACTAGCTTA 1715
||||||||| |||||
Sbjct 1668 TTTTCTACTTGCTTA 1682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64448694540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5