BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65790.1
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496816 jgi|Araly1|496816|fgenesh2_kg.8__2632__AT5G65790.1 2145 0.0
Ahg897842 jgi|Araly1|897842|Al_scaffold_0005_1808 532 2e-150
Ahg482672 jgi|Araly1|482672|fgenesh2_kg.4__1732__AT2G36890.1 259 4e-68
> Ahg496816 jgi|Araly1|496816|fgenesh2_kg.8__2632__AT5G65790.1
Length=1325
Score = 2145 bits (1161), Expect = 0.0
Identities = 1276/1330 (96%), Gaps = 14/1330 (1%)
Strand=Plus/Plus
Query 72 ATCAAGAATCAAGAAAATGGGAAGAGCACCGTGTTGTGATAAGGCCAACGTGAAGAAAGG 131
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCAAGAATCAAGAAGATGGGAAGAGCACCGTGTTGTGATAAGGCCAACGTGAAGAAAGG 60
Query 132 GCCTTGGTCTCCTGAGGAAGACGCCAAACTCAAAGATTACATCGAGAATAGTGGCACAGG 191
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCCTTGGTCGCCTGAAGAAGACGCCAAACTCAAAGATTACATCGAGAATAGTGGCACAGG 120
Query 192 AGGCAACTGGATTGCTTTGCCTCAGAAA-ATTGGTTTAAGGAGATGTGGGAAGAGTTGCA 250
|||||| ||||| ||||||||||| ||| |||||||||||||||||||| ||||||||||
Sbjct 121 AGGCAATTGGATCGCTTTGCCTCA-AAAGATTGGTTTAAGGAGATGTGGAAAGAGTTGCA 179
Query 251 GGCTAAGGTGGCTCAACTATTTGAGACCAAACATCAAACATGGTGGCTTCTCCGAGGAAG 310
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGCTTAGGTGGCTCAACTATTTGAGACCAAACATCAAACATGGTGGCTTCTCCGAGGAAG 239
Query 311 AAGACAACATCATTTGTAACCTCTATGTTACTATTGGTAGCAGGTGGTCTATAATTGCTG 370
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 240 AAGACAACATCATTTGTAACCTTTATGTTACAATTGGTAGCAGGTGGTCTATAATTGCTG 299
Query 371 CACAATTGCCGGGAAGAACCGACAACGATATCAAAAACTATTGGAACACGAGGCTGAAGA 430
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CACAATTGCCGGGAAGAACGGACAACGATATCAAAAACTATTGGAACACGAGGCTGAAGA 359
Query 431 AGAAGCTTCTGAACAAACAAAGGAAAGAGTTCCAAGAAGCGCGAATGAAGCAAGAGATGG 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGAAGCTTCTGAACAAACAAAGGAAAGAGTTCCAAGAAGCGCGAATGAAGCAAGAGATGG 419
Query 491 TGATGATGAAAAGGCAACAACAAGGACAAGGACAAGGTCAAAGTAATGGTAGTACGGATC 550
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 420 TGATGATGAAAAGACAACAACAAGGACAAGGACAAGGTCAAGGTAATGGTAGTACGGATC 479
Query 551 TTTATCTTAACAACATGTTTGGATCATCACCATGGCCATTACTACCACAACTTCCTCCTC 610
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 480 TTTATCTTAACAACATGTTTGGATCATCACCGTGGCCATTACTACCACAGCTTCCTCCTC 539
Query 611 CACATCATCAAATACCTCTTG-GAATGATGGAACCAACAAGCTGTAACTACTACCAAACG 669
| ||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||
Sbjct 540 CTCATCATCAAATACCTCTTGTG-ATGATGGAACCAACAAGCTGTAACTACTATCAAACG 598
Query 670 ACACCGTCTTGTAACCTAGAACAAAAGCCATTGATCACACTCAAGAACATGGTCAAGATT 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ACACCGTCTTGTAACCTAGAACAAAAGCCATTGATCACACTCAAGAACATGGTCAAGATT 658
Query 730 GAAGAAGAACAGGAAAGGACAAACCCTGATCAT---CATCATCAAGATTCTGTCACAAAC 786
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 659 GAAGAAGAACAAGAAAGGACAAACCCTGATCATCACCATCATCAAGATTCTGTCACAAAC 718
Query 787 CCTTTTGATTTCTCTTTCTCTCAGCTTTTGTTAGATCCCAATTACTATCTGGGATCAGGA 846
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 719 CCTTTTGATTTCTCTTTCTCTCAGCTTTTGTTAGATCCCAATTACTATTTGGGATCAGGA 778
Query 847 GGGGGAGGAGAAGGAGATTTTGCTATCATGAGCAGCAGCACAAACTCACCATTACCAAAC 906
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 779 GTGGGAGGAGAAGGAGATTTTGCTATCACGAGCAGCAGCACAAACTCACCATTACCAAAC 838
Query 907 ACAAGTAGTGATCAACATCCAAGTCAACAGCAAGAGATTCTTCAATGGTTTGGGAGCAGT 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ACAAGTAGTGATCAACATCCAAGTCAACAGCAAGAGATTCTTCAATGGTTTGGGAGCAGT 898
Query 967 AACTTTCAGACAGAAGCAATCAACGATATGTTCATAAACAACAACAACAACATAGTGAAT 1026
||||||||||| ||||||||||||||||||||| ||||||||||||||| | ||||||
Sbjct 899 AACTTTCAGACTGAAGCAATCAACGATATGTTCTTAAACAACAACAACA---TGGTGAAT 955
Query 1027 CTTGAGACCATCGAGAACACAAAAGTCTATGGAGACGCCTCAGTAGCCGGAGCCGCTGTC 1086
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 956 CTTGAGACCAACGAGAACACAAAAGTCTATGGAGACTCCTCAGTAGCCGGAGCCGCGGTC 1015
Query 1087 CGAGCAGCTTTGGGCGGAGGGACAACGAGTACATCGGCGGATCAAAGTACAATAAGTTGG 1146
|||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1016 GGAGCAGCTTTTGCCGGAGGGACGACGAGTACATCGGCGGATCAAAGTACAATAAGTTGG 1075
Query 1147 GAGGATATAACTTCTCTAGTTAATTCCGAAGATGCAAGTTACTTCAATGCGCCAAATCAT 1206
||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1076 GAGGATATAACCTCTCTTGTTAATACCGAAGATGCAAGTTACTTCAATGCGCCAAATCAT 1135
Query 1207 GTGTAACATTTTGTTTAAAACTTTATTTGTACTTAAA-TACATAAAGAGGGGTTTTCTAT 1265
|||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 1136 GTGTAACATTTTGTTTAAAACTTTATTTTTACTTAAAATATATAAAGAGGGGTTTTCTAT 1195
Query 1266 TTTGTATAAATCTGTGTCTTTAGGG-AGTGGTAGAAAAGTTTTATGGATTGAGATTAGTA 1324
||||||||||| ||||| ||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1196 TTTGTATAAATTTGTGTATTTAGGGGAGTGGTAGAAAAGTTATATGGATTGAGATTAGTA 1255
Query 1325 TTCATGCAGAAATTTGTTTATTTT--AGTTTCAACTTAGCTTTATTCGAACAACTTATAT 1382
||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1256 TTCATGCCGAAATTTGTTTATTTTTTAGTTTCAACTTAGCTTTATTCGAACAATTTATAT 1315
Query 1383 GATATTTTTT 1392
||||||||||
Sbjct 1316 GATATTTTTT 1325
> Ahg897842 jgi|Araly1|897842|Al_scaffold_0005_1808
Length=921
Score = 532 bits (288), Expect = 2e-150
Identities = 385/432 (89%), Gaps = 6/432 (1%)
Strand=Plus/Plus
Query 88 ATGGGAAGAGCACCGTGTTGTGATAAGGCCAACGTGAAGAAAGGGCCTTGGTCTCCTGAG 147
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGAGCACCGTGTTGTGACAAAGCAAACGTGAAGAAAGGGCCTTGGTCTCCTGAG 60
Query 148 GAAGACGCCAAACTCAAAGATTACATCGAGAATAGTGGCACAGGAGGCAACTGGATTGCT 207
||||| || ||||||||| |||||| || || ||||| ||||||||||| ||||| |||
Sbjct 61 GAAGATGCAAAACTCAAATCTTACATTGAAAAGAGTGGAACAGGAGGCAATTGGATCGCT 120
Query 208 TTGCCTCAGAAAATTGGTTTAAGGAGATGTGGGAAGAGTTGCAGGCTAAGGTGGCTCAAC 267
||||||||||| |||||||||| |||||||||||||||||||||||| |||||||| |||
Sbjct 121 TTGCCTCAGAAGATTGGTTTAAAGAGATGTGGGAAGAGTTGCAGGCTGAGGTGGCTTAAC 180
Query 268 TATTTGAGACCAAACATCAAACATGGTGGCTTCTCCGAGGAAGAAGACAACATCATTTGT 327
||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 181 TATCTGAGACCAAACATCAAACATGGTGGCTTCTCTGAGGAAGAAGAAAACATCATTTGT 240
Query 328 AACCTCTATGTTACTATTGGTAGCAGGTGGTCTATAATTGCTGCACAATTGCCGGGAAGA 387
| ||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| ||
Sbjct 241 AGCCTCTATCTTACTATTGGTAGCAGGTGGTCTATAATCGCTGCTCAATTGCCGGGACGA 300
Query 388 ACCGACAACGATATCAAAAACTATTGGAACACGAGGCTGAAGAAGAAGCTTCTGAACAAA 447
|| ||||||||||| ||||||||||||||||| ||||| |||||||| ||| | ||||||
Sbjct 301 ACAGACAACGATATAAAAAACTATTGGAACACTAGGCTCAAGAAGAAACTTATTAACAAA 360
Query 448 CAAAGGAAAGAGTTCCAAGAAGCGCGAATG-A--AGCAAGAGATG--G-TGATGATGAAA 501
||| | || ||| |||||||||| | ||| | ||||||||||| | ||||||||||
Sbjct 361 CAACGCAAGGAGCTCCAAGAAGCTTGTATGGAGCAGCAAGAGATGATGGTGATGATGAAG 420
Query 502 AGGCAACAACAA 513
|| |||||||||
Sbjct 421 AGACAACAACAA 432
> Ahg482672 jgi|Araly1|482672|fgenesh2_kg.4__1732__AT2G36890.1
Length=952
Score = 259 bits (140), Expect = 4e-68
Identities = 285/355 (80%), Gaps = 10/355 (3%)
Strand=Plus/Plus
Query 88 ATGGGAAGAGCACCGTGTTGTGATAAGGCCAACGTGAAGAAAGGGCCTTGGTCTCCTGAG 147
||||| || || || |||||||| |||| || ||||||| ||| || |||||||||||
Sbjct 43 ATGGGTAGGGCTCCATGTTGTGACAAGGAAAATGTGAAGAGAGGTCCATGGTCTCCTGAA 102
Query 148 GAAGACGCCAAA-CTCAAAGATTACATCGAG-AATAGTGGCACAGGAGGCAACTGGATTG 205
||||| | |||| || ||||||||||||||| || | ||||| || ||||| |||||||
Sbjct 103 GAAGATG-CAAAGCTTAAAGATTACATCGAGAAACA-AGGCACTGGTGGCAATTGGATTG 160
Query 206 CTTTGCCTCAGAAAATTGGTTTAAGGAGATGTGGGAAGAGTTGCAGGCTAAGGTGGCTCA 265
|| | ||||| ||| |||||||||||||||||||||||||||||| || || ||| | |
Sbjct 161 CTCTCCCTCACAAAGCTGGTTTAAGGAGATGTGGGAAGAGTTGCAGACTGAGATGGTTAA 220
Query 266 ACTATTTGAGACCAAACATCAA-ACATGGTGGCTTCTCCGAGGAAGAAGACAACATCATT 324
| ||||||||||| ||||| || |||||| | ||| | |||||||||||||| || ||
Sbjct 221 ATTATTTGAGACCTAACAT-AAGACATGGAGATTTCACTGAGGAAGAAGACAAGATTATC 279
Query 325 TGTAACCTCTATGT-TACTATTGGTAGCAGGTGGTCTA-TAATTGCTGCACAATTGCCGG 382
| | |||||||| | | ||||| ||||||||||| | |||| || || || |||| |
Sbjct 280 TACAGCCTCTATGCCTCC-ATTGGAAGCAGGTGGTC-AGTAATAGCAGCTCACTTGCAAG 337
Query 383 GAAGAACCGACAACGATATCAAAAACTATTGGAACACGAGGCTGAAGAAGAAGCT 437
| ||||| || || || ||||| |||||||||||||| | ||| |||||||||||
Sbjct 338 GTAGAACTGATAATGACATCAAGAACTATTGGAACACTAAGCTCAAGAAGAAGCT 392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52526447855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5