BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65800.1
Length=1877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332796 jgi|Araly1|332796|fgenesh1_pm.C_scaffold_8002139 2410 0.0
Ahg348080 jgi|Araly1|348080|fgenesh1_pg.C_scaffold_5001472 1330 0.0
> Ahg332796 jgi|Araly1|332796|fgenesh1_pm.C_scaffold_8002139
Length=1413
Score = 2410 bits (1305), Expect = 0.0
Identities = 1377/1413 (97%), Gaps = 0/1413 (0%)
Strand=Plus/Plus
Query 115 ATGAAACAGCTTTCGACAAAAGTGACAAGCAATGGTCATGGACAAGACTCATCCTACTTC 174
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAACAGCTTTCAACAAAAGTGACAAGCAATGGTCATGGACAAGACTCATCCTACTTC 60
Query 175 TTGGGATGGGAAGAGTACGAGAAGAATCCTTATGATGAGATCAAGAACCCTAATGGGATG 234
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TTGGGATGGGAAGAGTACGAGAAGAATCCTTACGATGAGATCAAGAACCCTAATGGGATG 120
Query 235 ATCCAGATGGGTCTAGCCGAAAACCAGCTATGTTTCGATCTAATCGAGTCATGGTTAACT 294
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 ATCCAGATGGGTCTTGCCGAAAACCAGCTATGTTTCGATCTAATCGAGTCATGGTTAGTT 180
Query 295 AAGAACCCAGACGCGGCAAGTCTCAAGAGGAACGGTCAATCCATTTTCAGAGAGCTTGCT 354
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGAACCCAGATGCAGCTAGTCTCAAGAGGAACGGTCAATCCATTTTCAGAGAGCTTGCT 240
Query 355 CTATTTCAAGACTATCATGGCATGCCTGAATTCAAAAAAGCTATGGCTGAGTTTATGGAA 414
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCTTTCAAGACTATCATGGCATGCCTGAATTCAAAAAAGCTATGGCTGAGTTTATGGAA 300
Query 415 GAGATAAGAGGAAACCGTGTCACGTTCGATCCAAAAAAGATTGTTTTAGCGGCTGGTTCG 474
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 301 GAGATAAGAGGAAACCGTGTCACGTTCGATCCAAAAAATATTGTTTTAGCCGCTGGTTCG 360
Query 475 ACATCTGCGAATGAGACTCTCATGTTTTGCCTTGCAGAGCCTGGCGATGCTTTCCTTTTG 534
|| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 361 ACCTCTGCGAACGAGACTCTCATGTTTTGTCTTGCAGAGCCTGGTGATGCTTTCCTTTTG 420
Query 535 CCTACTCCTTACTATCCTGGATTTGATAGAGATCTTAAATGGAGAACCGGAGCAGAGATA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCTACTCCTTACTATCCTGGATTTGATAGAGATCTTAAATGGAGAACCGGAGCAGAGATA 480
Query 595 GTACCCATTCACTGCTCAAGCTCTAATGGCTTCCAAATCACGGAATCAGCTCTGCAACAA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTACCCATTCACTGCTCAAGCTCTAATGGCTTCCAAATCACGGAATCAGCTCTGCAACAA 540
Query 655 GCTTACCAACAAGCCCAGAAACTTGATCTCAAAGTCAAAGGAGTTCTTGTCACGAATCCA 714
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 GCTTACCAACAAGCCGAGAAACTTGATCTTAAAGTCAAAGGAGTTCTTGTCACGAATCCA 600
Query 715 TCTAACCCACTTGGCACTGCGTTGACCAGACGTGAACTTAACCTTCTCGTTGACTTCATC 774
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 TCTAACCCACTTGGCACTGCGTTGACCAGACGTGAGCTTAACCTTCTCGTTGACTTCATC 660
Query 775 ACTTCCAAGAACATTCATCTCATTAGCGACGAGATCTATTCAGGCACTATGTTCGGGTTT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACTTCCAAGAACATTCATCTCATTAGCGACGAGATCTATTCAGGCACTATGTTCGGGTTT 720
Query 835 GAACAGTTCATAAGCGTAATGGATGTCTTGAAAGACAAGAAACTCGAAGACACGGAGGTT 894
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 721 GAACAGTTCATAAGCGTAATGGATGTCTTGAAAGACAAGAAACTCGAAAACACCGAGGTT 780
Query 895 TCAAAACGAGTCCACGTCGTTTATAGCCTTTCTAAAGATCTGGGACTTCCTGGTTTCCGT 954
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 781 TCAAAACGAGTCCACGTCGTTTATAGCCTTTCCAAAGATTTGGGACTTCCTGGTTTCCGT 840
Query 955 GTGGGAGCGATCTACTCCAACGACGAAATGATCGTTTCAGCAGCTACAAAAATGTCAAGT 1014
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 841 GTGGGAGCGATCTACTCCAACGAAGAAATGATCGTTTCGGCAGCTACAAAAATGTCAAGT 900
Query 1015 TTTGGTCTTGTTTCTTCTCAGACACAATACCTTCTCTCTGCATTGCTCTCCGACAAGAAG 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTTGGTCTTGTTTCTTCTCAGACACAATACCTTCTCTCTGCATTGCTCTCCGACAAGAAG 960
Query 1075 TTCACTAGCCAATACCTCGAAGAGAACCAGAAACGACTCAAGTCCAGACAGAGACGCCTC 1134
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 961 TTCACAAGCCAATACCTCGAAGAGAATCAGAAACGACTCAAGTCCAGACAGAGACGTCTC 1020
Query 1135 GTGTCTGGTCTTGAGTCTGCAGGGATTACTTGCCTGAGAAGCAACGCGGGTTTGTTCTGT 1194
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GTGTCTGGTCTTGAGTCAGCGGGGATTACTTGCCTGAGAAGCAACGCGGGTTTGTTCTGT 1080
Query 1195 TGGGTCGACATGAGACACCTTTTGGACACAAACACATTTGAAGCAGAGCTTGACCTCTGG 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1081 TGGGTCGACATGAGACACCTTTTGGACACAAACACATTTGAAGCAGAGCTTGATCTCTGG 1140
Query 1255 AAAAAGATTGTTTACAACGTGAAACTAAACATATCACCCGGTTCTTCATGTCACTGCACC 1314
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1141 AAAAAGATTGTTTACAACGTGAAACTAAACATCTCACCCGGTTCGTCATGTCACTGCACC 1200
Query 1315 GAACCGGGTTGGTTTAGGGTTTGTTTCGCTAATATGAGCGAGGACACACTCGATTTGGCC 1374
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1201 GAACCGGGTTGGTTTAGGGTTTGTTTCGCTAATATGAGCGAGGATACACTCGATTTGGCC 1260
Query 1375 TTGAAGAGGCTCAAAACTTTCGTAGAATCCACAGACTGTGGACGAATGATATCAAGAAGC 1434
||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||
Sbjct 1261 TTGAAGAGGCTCAAAACTTTCGTCGAATCCACAGACTGTGGAAGAATGATTTCAAGAAGC 1320
Query 1435 AGCCATGAAAGGCTCAAGAGTTTGAGGAAGAAGACAGTCTCTAACTGGGTTTTCCGGGTT 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 AGCCATGAAAGGCTCAAGAGTTTGAGGAAGAAGACAGTCTCTAACTGGGTTTTCCGGGTT 1380
Query 1495 TCATGGACCGATCGTGTACCTGATGAACGATGA 1527
|||||||||||||||||||||||||||||||||
Sbjct 1381 TCATGGACCGATCGTGTACCTGATGAACGATGA 1413
> Ahg348080 jgi|Araly1|348080|fgenesh1_pg.C_scaffold_5001472
Length=1413
Score = 1330 bits (720), Expect = 0.0
Identities = 1198/1429 (84%), Gaps = 32/1429 (2%)
Strand=Plus/Plus
Query 115 ATGAAACAGCTTTCGACAAAAGTGACAAGCAATGGTCATGGACAAGACTCATCCTACTTC 174
|||||||| || |||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1 ATGAAACAACTGTCGACAAAAGTGACAAGCAATGCTCATGGACAAGACTCTTCCTACTTC 60
Query 175 TTGGGATGGGAAGAGTACGAGAAGAATCCTTATGATGAGATCAAGAACCCTAATGGGATG 234
|||||||||||||| ||||||||||| ||||| | || ||||||||||||||||||||
Sbjct 61 TTGGGATGGGAAGAATACGAGAAGAACCCTTACAACGAAATCAAGAACCCTAATGGGATT 120
Query 235 ATCCAGATGGGTCTAGCCGAAAACCAGCTATGTTTCGATCTAATCGAGTCATGGTTAACT 294
|| || |||||||| |||||||| ||||||||||| ||||| || ||| |||||||| ||
Sbjct 121 ATTCAAATGGGTCTTGCCGAAAATCAGCTATGTTTTGATCTCATAGAGACATGGTTAGCT 180
Query 295 AAGAACCCAGACGCGGCAAGTCTCAAG-AGGAACGGTCAATCCATTTTCAGAGAGCTTGC 353
||||| || ||||| || | |||||| ||| |||| ||||||||||||| |||||||||
Sbjct 181 AAGAATCCGGACGCAGCCGGACTCAAGAAGG-ACGGCCAATCCATTTTCAAAGAGCTTGC 239
Query 354 TCTATTTCAAGACTATCATGGCATGCCTGAATTCAAAAAAGCTATGGCTGAGTTTATGGA 413
||| || ||||||||||||||| | ||||||||||| |||||| ||||||||||||||||
Sbjct 240 TCTCTTCCAAGACTATCATGGCCTACCTGAATTCAAGAAAGCTTTGGCTGAGTTTATGGA 299
Query 414 AGAGATAAGAGGAAACCGTGTCACGTTCGATCCAAAAAAGATTGTTTTAGCGGCTGGTTC 473
|| ||||||||||| | || || || ||||| | |||||||| |||| ||||||||
Sbjct 300 GGAAATAAGAGGAAATAGAGTAACATTTGATCCTAGCAAGATTGTCCTAGCTGCTGGTTC 359
Query 474 GACATCTGCGAATGAGACTCTCATGTTTTGCCTTGCAGAGCCTGGCGATGCTTTCCTTTT 533
|| ||||| || || |||||||||||||| || || || || || || |||||||||||
Sbjct 360 AACCTCTGCCAACGAAACTCTCATGTTTTGTCTCGCCGAACCCGGGGACGCTTTCCTTTT 419
Query 534 GCCTACTCCTTACTATCCTGGATTTGATAGAGATCTT-AAATGGAGAACCGGAGCAGAGA 592
|| ||||||||||| || ||||||||||||||| || ||||||||||| ||||||||||
Sbjct 420 ACCAACTCCTTACTACCCAGGATTTGATAGAGAT-TTGAAATGGAGAACGGGAGCAGAGA 478
Query 593 TAGTACCCATTCACTGCTCAAGCTCTAATGGCTTCCAAATCACGGAATCAGCTCTGCAAC 652
| ||||| || || ||||||||||||||||| |||||||| || || |||||||| ||||
Sbjct 479 TCGTACCTATCCATTGCTCAAGCTCTAATGGGTTCCAAATAACAGAGTCAGCTCTTCAAC 538
Query 653 AAGCTTACCAACAAGCCCAGAAA-CTTGATCTCAAAGTCAAAGGAGTTCTTGTCACGAAT 711
||||||| || ||||| || ||| |||||||| || ||||||||||||||||| || ||
Sbjct 539 AAGCTTATCAGCAAGCTCA-AAAGCTTGATCTTAAGGTCAAAGGAGTTCTTGTTACCAAC 597
Query 712 CCATCTAACCCACTTGGCACTGCGTTGACCAGACGTGAACTTAACCTTCTCGTTGACTTC 771
|| |||||||| |||||||| ||||||| || | ||| ||||||| || |||||||||
Sbjct 598 CCGTCTAACCCTCTTGGCACAATGTTGACCCGAAGGGAAATTAACCTCCTAGTTGACTTC 657
Query 772 ATCACTTCCAAGAACATTCATCTCATTAGCGACGAGATCTATTCAGGCACTATGTTCGGG 831
|| ||||||| |||||||||||||| ||||||||||| |||||||| ||| | || |||
Sbjct 658 ATTTCTTCCAAAAACATTCATCTCATAAGCGACGAGATATATTCAGGTACTGTTTTTGGG 717
Query 832 TTTGAACAGTTCATAAGCGTAATGGATGTCTTGAAAGACAAGAAACTCGAAG-ACACG-G 889
||||||||||| | || || ||||||||||| ||||||||||| || | || ||| | |
Sbjct 718 TTTGAACAGTTTGTTAGTGTCATGGATGTCTTAAAAGACAAGAATCTTG-AGAACA-GCG 775
Query 890 AGGTTTCAAAACGAGTCCACGTCGTTTATAGCCTTTCTAAAGATCTGGGACTT-CCTGGT 948
| || || |||||||| || ||||||||||| ||||| |||||||| || || || |||
Sbjct 776 AAGTCTCCAAACGAGTTCATGTCGTTTATAGTCTTTCCAAAGATCTCGG-TTTACCGGGT 834
Query 949 TTCCGTGTGGGAGCGATCTACTCCAACGACGAAATGATCGTTTCAGCAGCTACAAAAATG 1008
|| || || ||||| || |||||||||||||||||| | ||||| || || |||||||||
Sbjct 835 TTTCGCGTTGGAGCAATATACTCCAACGACGAAATGGTTGTTTCCGCTGCCACAAAAATG 894
Query 1009 TCAAGTTTTGGTCTTGTTTCTTCTCAGACACAATACCTTCTCTCTGCATTGCTCTCCGAC 1068
|||||||| || || || |||||||| ||||| ||||||||||||||||| || ||||||
Sbjct 895 TCAAGTTTCGGCCTCGTGTCTTCTCAAACACAGTACCTTCTCTCTGCATTACTTTCCGAC 954
Query 1069 AAGAAGTTCACTAGCCA-ATACCTCGAA-GAGAACCAGAAACGACTCAAG-TCCAGACAG 1125
|| |||||||| || | ||||||| || || ||||||||| |||||||| | | | |||
Sbjct 955 AAAAAGTTCACAAG-TACATACCTC-AACGAAAACCAGAAAAGACTCAAGATTC-GTCAG 1011
Query 1126 -AGACGCCTCGTGTCTGGTCTTG-AGTCTGCAGGGATTACTTGCCTGAGAAGCAACGCGG 1183
|| | |||||||| ||||| | || |||||||| ||||||| || | ||||||||| |
Sbjct 1012 AAG-CAACTCGTGTCCGGTCTAGAAG-CTGCAGGGGTTACTTGTCTTAAAAGCAACGCTG 1069
Query 1184 GTTTGTTCTGTTGGGTCGACATGAGACACCTTTTGGACACAAACACATTTGAAGCAGAGC 1243
|||| ||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 1070 GTTTATTCTGTTGGGTTGACATGAGACATCTCTTGGACACAAACACATTCGAAGCAGAGC 1129
Query 1244 TTGACCTCTGGAAAAAGATTGTTTA-CAACGTGAAACTAAACATATCACCCGGTTCTTCA 1302
|| | || ||||| |||||||| || || || || ||||| || ||||||||||| ||
Sbjct 1130 TTCAGCTATGGAAGAAGATTGTATATGAA-GTCAAGCTAAATATTTCACCCGGTTCATCG 1188
Query 1303 TGTCACTGCACCGAACCGGGTTGGTTTAGGGTTTGTTTCGCTAATATGAGCGAGGACACA 1362
|| || || || ||||| ||||||||||||||||||||||| || |||||||| || ||
Sbjct 1189 TGCCATTGTACTGAACCAGGTTGGTTTAGGGTTTGTTTCGCCAACATGAGCGAAGATACG 1248
Query 1363 C-TCGATTTGGCCTTGAAGAGGCTCAAAAC-TTTCGTAGAATCCACAGACT-GTGGACGA 1419
| || ||||||| |||||||| || |||| | |||||| || ||||| | || | |
Sbjct 1249 CTTC-ATTTGGCGATGAAGAGGTTC-AAACAGTACGTAGAGTCTACAGA-TAGTAAAAGG 1305
Query 1420 ATGATATCAAGAAGCAGCCATGAAAGGCTCAAGAGTTTGAGGAAGAAG-ACAGTCTCTAA 1478
||||| |||| |||||| ||||||||| ||||||||||||||||| || || ||||||||
Sbjct 1306 ATGATTTCAAAAAGCAGTCATGAAAGGATCAAGAGTTTGAGGAAG-AGAACTGTCTCTAA 1364
Query 1479 CTGGGTTTTCCGGGTTTCATGGACCGATCGTGTACCTGATGAACGATGA 1527
||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1365 CTGGGTTTTCCGGGTTTCATGGACCGACCGCGTACCTGATGAACGATGA 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70505043495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5