BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65810.1
Length=1124
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332797 jgi|Araly1|332797|fgenesh1_pm.C_scaffold_8002140 1297 0.0
Ahg485334 jgi|Araly1|485334|fgenesh2_kg.5__1326__AT3G49720.1 765 0.0
> Ahg332797 jgi|Araly1|332797|fgenesh1_pm.C_scaffold_8002140
Length=777
Score = 1297 bits (702), Expect = 0.0
Identities = 752/777 (97%), Gaps = 0/777 (0%)
Strand=Plus/Plus
Query 180 ATGTCAAGAAGGCAAGTAAGGCGTGTAGGGGATAGTGGAAGCTTCCCATTTGTAGGAGCT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCAAGAAGGCAAGTAAGGCGTGTAGGGGATAGTGGAAGCTTCCCATTTGTAGGAGCT 60
Query 240 CTGCATTCAAAATCACGTTCGTCTCCTCTGTTATCAGTTTGCCTTGTTCTCGTGGGAGCA 299
||||||| ||||| |||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 61 TTGCATTCGAAATCGCGTTCGTCTCCTTTGTTATCTGTTTGCCTTGTTCTCGTGGGAGCA 120
Query 300 TGCCTTCTCATTGGTTATGCTTACAGTGGTCCAGGTATGTTCAAAAGTATCAGAGAAGTC 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 TGCCTTCTCATTGGTTATGCTTACAGTGGTCCAGGTATGTTCAAAAGTATAAGAGAAGTC 180
Query 360 AGCAAGATTACAGGTGACTATTCTTGCACAGCAGAAGTTCAAAGAGCCATTCCTATTCTT 419
|||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 181 AGCAAGATCACAGGTGACTATTCTTGCACAGCAGAAGTTCATAGAGCCATTCCTGTTCTT 240
Query 420 AAGAGTGCGTATGGAGATAGCATGCGCAAAGTCCTGCACGTGGGTCCTGAAACATGCTCA 479
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGAGTGCGTATGGAGACAGCATGCGCAAAGTCCTGCACGTGGGTCCTGAAACATGCTCA 300
Query 480 GTGGTCTCGAGTCTGTTGAATGAAGAAGAGACAGAAGCATGGGGTGTTGAACCATATGAT 539
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GTCGTCTCGAGTCTGTTGAATGAAGAAGAGACGGAAGCATGGGGTGTTGAACCATATGAT 360
Query 540 GTGGAGGATGCAGACTCTAACTGCAAAAGTCTTTTGCACAAGGGCCTTGTACGTGTGGCT 599
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GTGGAGGATGCAGATTCTAACTGCAAAAGTCTTTTGCACAAAGGCCTTGTACGTGTGGCT 420
Query 600 GACATCAAATTCCCTCTTCCTTACCGGTCAAAGTCGTTTTCTCTTGTGATCGTCTCAGAC 659
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GACATCAAATTCCCTCTGCCTTACCGGTCAAAGTCGTTTTCTCTTGTGATCGTCTCAGAC 480
Query 660 GCTTTGGATTACCTCTCACCCAGGTACCTGAACAAAACTGTGCCTGAACTTGCTCGCGTC 719
|| |||||||||||||| |||||||||||||||||||| |||||||||||||| || |||
Sbjct 481 GCATTGGATTACCTCTCGCCCAGGTACCTGAACAAAACCGTGCCTGAACTTGCACGGGTC 540
Query 720 GCTTCAGATGGTGTCGTTCTTTTAGCAGGTAACCCTGGTCAACAAAAGGCTAAAGGTGGG 779
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 541 GCTTCAGATGGTGTCGTTCTTTTTGCAGGTAACCCTGGTCAACAAAAGGCTAAAGGTGCG 600
Query 780 GAATTGTCGAAATTTGGACGGCCTGCTAAAATGCGTAGCTCGTCGTGGTGGATCCGTTTC 839
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 601 GAATTGTCGAAATTTGGACGACCGGCTAAAATGCGTAGCTCGTCGTGGTGGATCCGTTTC 660
Query 840 TTCTCACAGACGAACTTAGAGGAAAACGAAGCAGCAAGCAAGAAATTCGAACAAGCAGCT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTCTCACAGACGAACTTAGAGGAAAACGAAGCAGCAAGCAAGAAATTCGAACAAGCAGCT 720
Query 900 TCCAAGAGTTCATACAAACCAGCTTGTCAAGTTTTCCACCTCAAGCCATTACATTAG 956
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 721 TCCAAGAGTTCATACAAACGAGCTTGTCAAGTTTTCCACCTCAAGCCATTACATTAG 777
> Ahg485334 jgi|Araly1|485334|fgenesh2_kg.5__1326__AT3G49720.1
Length=1129
Score = 765 bits (414), Expect = 0.0
Identities = 656/771 (85%), Gaps = 24/771 (3%)
Strand=Plus/Plus
Query 197 AAGGCGTGTAGGGGATAGTGGAAGCTTCCCATTTGTAGGAGCTCTGCATTCAAAATCACG 256
||| |||||||| ||| ||||||||||||| |||| ||||||| |||||||||| || ||
Sbjct 186 AAGACGTGTAGGAGATGGTGGAAGCTTCCCGTTTGCAGGAGCTTTGCATTCAAAGTCTCG 245
Query 257 TTCGTCTCCTCTGTTATC-AGTTTGCCTTGTTCTCGTGGGAGCATGCCTTCTCATTGGTT 315
|| ||||| || | || | |||||||||| || |||| || |||||||| |||||||
Sbjct 246 ATCTTCTCCACTACTCTCTA-TTTGCCTTGTCCTTTTGGGGGCTTGCCTTCTTATTGGTT 304
Query 316 ATGCTTACAGTGGTCCAGGTATGTTCAAAAGTATCAGAGAAGTCAGC-AAGATTACAGGT 374
|||||||||||||||||||||| || |||||||||| |||||||||| ||| ||||||||
Sbjct 305 ATGCTTACAGTGGTCCAGGTATCTTTAAAAGTATCAAAGAAGTCAGCAAAG-TTACAGGT 363
Query 375 GACTATTCTTGCACAGCAGAAGTTCAAAGAGCCATTCCTATTCTTAAGA-GTGCGTATGG 433
||||||||||||||||||||||| ||||||||||||||| ||||||||| | || |||||
Sbjct 364 GACTATTCTTGCACAGCAGAAGTCCAAAGAGCCATTCCTGTTCTTAAGAAG-GCTTATGG 422
Query 434 AGATAGCATGCGCAAAGTCCTGCACGTGGGTCCTGAAACATGCTCAGTGGTCTCGAGTCT 493
|||| |||||||||||||| |||| ||||| ||||| |||||||||||||| || |||||
Sbjct 423 AGATGGCATGCGCAAAGTCTTGCATGTGGGCCCTGACACATGCTCAGTGGTTTCCAGTCT 482
Query 494 GTTGAATGAAGAAGAGACAGAAGCATGGGGTGTTGAACCATATGATGTGGAGGATGCAGA 553
|||| ||||||||||| |||||||||||||||||||||||||| | |||||||||||
Sbjct 483 ACTGAAAGAAGAAGAGACTGAAGCATGGGGTGTTGAACCATATGACATCGAGGATGCAGA 542
Query 554 CTCTAACTGCAAAAGTCTTT-TGCA-CAAGGGCCTTGTACGTGTGGCTGACATCAAATTC 611
||| ||||||| ||| ||| || | ||| |||||||||||||||||||| ||||| |||
Sbjct 543 TTCTCACTGCAAGAGT-TTTGTG-AGCAAAGGCCTTGTACGTGTGGCTGATATCAAGTTC 600
Query 612 CCTCTTCCTTACCGGTCAAAGTCGTTT-TCTCTTGTGATCGTCTCAGACGCTTTGGATTA 670
||||| || |||||| |||| || ||| ||||||||||| || ||||| ||| |||||||
Sbjct 601 CCTCTGCCCTACCGGGCAAAATC-TTTCTCTCTTGTGATTGTGTCAGATGCTCTGGATTA 659
Query 671 CCTCTCACCCAGGTACCTGAACAAAACTGTGCCTGAACTTGCTCGCGTCGCTTCAGATGG 730
|||||||||| |||||||||||| |||||||||||||| || | || |||||||| ||
Sbjct 660 TCTCTCACCCAAGTACCTGAACAAGACTGTGCCTGAACTCGCAAGGGTGGCTTCAGACGG 719
Query 731 TGTCGTTCTTTTAGCAGGTAACCCTGGTCAACAAA-AGGCTAAAGGTGGGGAATTGTCGA 789
||| |||||||| |||||| ||||||||| || | || |||||| || ||| |||| |
Sbjct 720 TGTTGTTCTTTTTGCAGGTCTCCCTGGTCAGCAGAGAG-CTAAAGTTGCTGAACTGTCTA 778
Query 790 AATTTGGACGGCCTGCTAAAATGCGTAGCT-CGTCGTGGTGGATCCG-TTTCTTC-TCAC 846
|||| || || || |||||||||||||| | | |||||||||| ||| ||| ||| || |
Sbjct 779 AATTCGGCCGACCCGCTAAAATGCGTAG-TGCATCGTGGTGGAACCGCTTT-TTCGTC-C 835
Query 847 AGACGAACTTAGAGGAAAACGAAGCAGCAAGCAAGAAATTCGAACAAGCAGCTTCCAA-G 905
|||| |||||||| |||||||||||| |||||||||| ||||| || || | |||||| |
Sbjct 836 AGACAAACTTAGAAGAAAACGAAGCACCAAGCAAGAAGTTCGATCAGGCTGTTTCCAAAG 895
Query 906 -AGTTCATACAAACCAGCTTGTCAAGTTTTCCACCTCAAGCCATTACATTA 955
| || |||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 896 GA-TT-ATACAAACCAGCCTGCCAAGTCTTCCACCTCAAGCCATTACATTA 944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41897085783
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5