BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G65810.1 Length=1124 Score E Sequences producing significant alignments: (Bits) Value Ahg332797 jgi|Araly1|332797|fgenesh1_pm.C_scaffold_8002140 1297 0.0 Ahg485334 jgi|Araly1|485334|fgenesh2_kg.5__1326__AT3G49720.1 765 0.0 > Ahg332797 jgi|Araly1|332797|fgenesh1_pm.C_scaffold_8002140 Length=777 Score = 1297 bits (702), Expect = 0.0 Identities = 752/777 (97%), Gaps = 0/777 (0%) Strand=Plus/Plus Query 180 ATGTCAAGAAGGCAAGTAAGGCGTGTAGGGGATAGTGGAAGCTTCCCATTTGTAGGAGCT 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCAAGAAGGCAAGTAAGGCGTGTAGGGGATAGTGGAAGCTTCCCATTTGTAGGAGCT 60 Query 240 CTGCATTCAAAATCACGTTCGTCTCCTCTGTTATCAGTTTGCCTTGTTCTCGTGGGAGCA 299 ||||||| ||||| |||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 61 TTGCATTCGAAATCGCGTTCGTCTCCTTTGTTATCTGTTTGCCTTGTTCTCGTGGGAGCA 120 Query 300 TGCCTTCTCATTGGTTATGCTTACAGTGGTCCAGGTATGTTCAAAAGTATCAGAGAAGTC 359 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 121 TGCCTTCTCATTGGTTATGCTTACAGTGGTCCAGGTATGTTCAAAAGTATAAGAGAAGTC 180 Query 360 AGCAAGATTACAGGTGACTATTCTTGCACAGCAGAAGTTCAAAGAGCCATTCCTATTCTT 419 |||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 181 AGCAAGATCACAGGTGACTATTCTTGCACAGCAGAAGTTCATAGAGCCATTCCTGTTCTT 240 Query 420 AAGAGTGCGTATGGAGATAGCATGCGCAAAGTCCTGCACGTGGGTCCTGAAACATGCTCA 479 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AAGAGTGCGTATGGAGACAGCATGCGCAAAGTCCTGCACGTGGGTCCTGAAACATGCTCA 300 Query 480 GTGGTCTCGAGTCTGTTGAATGAAGAAGAGACAGAAGCATGGGGTGTTGAACCATATGAT 539 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 301 GTCGTCTCGAGTCTGTTGAATGAAGAAGAGACGGAAGCATGGGGTGTTGAACCATATGAT 360 Query 540 GTGGAGGATGCAGACTCTAACTGCAAAAGTCTTTTGCACAAGGGCCTTGTACGTGTGGCT 599 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 361 GTGGAGGATGCAGATTCTAACTGCAAAAGTCTTTTGCACAAAGGCCTTGTACGTGTGGCT 420 Query 600 GACATCAAATTCCCTCTTCCTTACCGGTCAAAGTCGTTTTCTCTTGTGATCGTCTCAGAC 659 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GACATCAAATTCCCTCTGCCTTACCGGTCAAAGTCGTTTTCTCTTGTGATCGTCTCAGAC 480 Query 660 GCTTTGGATTACCTCTCACCCAGGTACCTGAACAAAACTGTGCCTGAACTTGCTCGCGTC 719 || |||||||||||||| |||||||||||||||||||| |||||||||||||| || ||| Sbjct 481 GCATTGGATTACCTCTCGCCCAGGTACCTGAACAAAACCGTGCCTGAACTTGCACGGGTC 540 Query 720 GCTTCAGATGGTGTCGTTCTTTTAGCAGGTAACCCTGGTCAACAAAAGGCTAAAGGTGGG 779 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 541 GCTTCAGATGGTGTCGTTCTTTTTGCAGGTAACCCTGGTCAACAAAAGGCTAAAGGTGCG 600 Query 780 GAATTGTCGAAATTTGGACGGCCTGCTAAAATGCGTAGCTCGTCGTGGTGGATCCGTTTC 839 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 601 GAATTGTCGAAATTTGGACGACCGGCTAAAATGCGTAGCTCGTCGTGGTGGATCCGTTTC 660 Query 840 TTCTCACAGACGAACTTAGAGGAAAACGAAGCAGCAAGCAAGAAATTCGAACAAGCAGCT 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TTCTCACAGACGAACTTAGAGGAAAACGAAGCAGCAAGCAAGAAATTCGAACAAGCAGCT 720 Query 900 TCCAAGAGTTCATACAAACCAGCTTGTCAAGTTTTCCACCTCAAGCCATTACATTAG 956 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 721 TCCAAGAGTTCATACAAACGAGCTTGTCAAGTTTTCCACCTCAAGCCATTACATTAG 777 > Ahg485334 jgi|Araly1|485334|fgenesh2_kg.5__1326__AT3G49720.1 Length=1129 Score = 765 bits (414), Expect = 0.0 Identities = 656/771 (85%), Gaps = 24/771 (3%) Strand=Plus/Plus Query 197 AAGGCGTGTAGGGGATAGTGGAAGCTTCCCATTTGTAGGAGCTCTGCATTCAAAATCACG 256 ||| |||||||| ||| ||||||||||||| |||| ||||||| |||||||||| || || Sbjct 186 AAGACGTGTAGGAGATGGTGGAAGCTTCCCGTTTGCAGGAGCTTTGCATTCAAAGTCTCG 245 Query 257 TTCGTCTCCTCTGTTATC-AGTTTGCCTTGTTCTCGTGGGAGCATGCCTTCTCATTGGTT 315 || ||||| || | || | |||||||||| || |||| || |||||||| ||||||| Sbjct 246 ATCTTCTCCACTACTCTCTA-TTTGCCTTGTCCTTTTGGGGGCTTGCCTTCTTATTGGTT 304 Query 316 ATGCTTACAGTGGTCCAGGTATGTTCAAAAGTATCAGAGAAGTCAGC-AAGATTACAGGT 374 |||||||||||||||||||||| || |||||||||| |||||||||| ||| |||||||| Sbjct 305 ATGCTTACAGTGGTCCAGGTATCTTTAAAAGTATCAAAGAAGTCAGCAAAG-TTACAGGT 363 Query 375 GACTATTCTTGCACAGCAGAAGTTCAAAGAGCCATTCCTATTCTTAAGA-GTGCGTATGG 433 ||||||||||||||||||||||| ||||||||||||||| ||||||||| | || ||||| Sbjct 364 GACTATTCTTGCACAGCAGAAGTCCAAAGAGCCATTCCTGTTCTTAAGAAG-GCTTATGG 422 Query 434 AGATAGCATGCGCAAAGTCCTGCACGTGGGTCCTGAAACATGCTCAGTGGTCTCGAGTCT 493 |||| |||||||||||||| |||| ||||| ||||| |||||||||||||| || ||||| Sbjct 423 AGATGGCATGCGCAAAGTCTTGCATGTGGGCCCTGACACATGCTCAGTGGTTTCCAGTCT 482 Query 494 GTTGAATGAAGAAGAGACAGAAGCATGGGGTGTTGAACCATATGATGTGGAGGATGCAGA 553 |||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||| Sbjct 483 ACTGAAAGAAGAAGAGACTGAAGCATGGGGTGTTGAACCATATGACATCGAGGATGCAGA 542 Query 554 CTCTAACTGCAAAAGTCTTT-TGCA-CAAGGGCCTTGTACGTGTGGCTGACATCAAATTC 611 ||| ||||||| ||| ||| || | ||| |||||||||||||||||||| ||||| ||| Sbjct 543 TTCTCACTGCAAGAGT-TTTGTG-AGCAAAGGCCTTGTACGTGTGGCTGATATCAAGTTC 600 Query 612 CCTCTTCCTTACCGGTCAAAGTCGTTT-TCTCTTGTGATCGTCTCAGACGCTTTGGATTA 670 ||||| || |||||| |||| || ||| ||||||||||| || ||||| ||| ||||||| Sbjct 601 CCTCTGCCCTACCGGGCAAAATC-TTTCTCTCTTGTGATTGTGTCAGATGCTCTGGATTA 659 Query 671 CCTCTCACCCAGGTACCTGAACAAAACTGTGCCTGAACTTGCTCGCGTCGCTTCAGATGG 730 |||||||||| |||||||||||| |||||||||||||| || | || |||||||| || Sbjct 660 TCTCTCACCCAAGTACCTGAACAAGACTGTGCCTGAACTCGCAAGGGTGGCTTCAGACGG 719 Query 731 TGTCGTTCTTTTAGCAGGTAACCCTGGTCAACAAA-AGGCTAAAGGTGGGGAATTGTCGA 789 ||| |||||||| |||||| ||||||||| || | || |||||| || ||| |||| | Sbjct 720 TGTTGTTCTTTTTGCAGGTCTCCCTGGTCAGCAGAGAG-CTAAAGTTGCTGAACTGTCTA 778 Query 790 AATTTGGACGGCCTGCTAAAATGCGTAGCT-CGTCGTGGTGGATCCG-TTTCTTC-TCAC 846 |||| || || || |||||||||||||| | | |||||||||| ||| ||| ||| || | Sbjct 779 AATTCGGCCGACCCGCTAAAATGCGTAG-TGCATCGTGGTGGAACCGCTTT-TTCGTC-C 835 Query 847 AGACGAACTTAGAGGAAAACGAAGCAGCAAGCAAGAAATTCGAACAAGCAGCTTCCAA-G 905 |||| |||||||| |||||||||||| |||||||||| ||||| || || | |||||| | Sbjct 836 AGACAAACTTAGAAGAAAACGAAGCACCAAGCAAGAAGTTCGATCAGGCTGTTTCCAAAG 895 Query 906 -AGTTCATACAAACCAGCTTGTCAAGTTTTCCACCTCAAGCCATTACATTA 955 | || |||||||||||| || ||||| ||||||||||||||||||||||| Sbjct 896 GA-TT-ATACAAACCAGCCTGCCAAGTCTTCCACCTCAAGCCATTACATTA 944 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41897085783 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5