BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65840.1
Length=1220
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496819 jgi|Araly1|496819|fgenesh2_kg.8__2635__AT5G65840.1 1539 0.0
> Ahg496819 jgi|Araly1|496819|fgenesh2_kg.8__2635__AT5G65840.1
Length=1141
Score = 1539 bits (833), Expect = 0.0
Identities = 1064/1168 (91%), Gaps = 45/1168 (4%)
Strand=Plus/Plus
Query 16 AATTGAGTTTATGATTTTGGTTTCTGAATCACCAATGGCGATTCTCTCTCTACGATCTTC 75
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1 AATTGAGTTTATGATTTTGGTTTCTGAGTCACCAATGGCGATTTTCTCTCTACGATCTTC 60
Query 76 GAGCTCATTGCCGCTTATTTGTTCCACAATTTCTCCTCTGTGCTCGAAACCCATGTTGTC 135
||||| ||||| || ||||||||||||||||||||| |||||||||||||| ||||
Sbjct 61 AAGCTCCTTGCCACTCATTTGTTCCACAATTTCTCCTATGTGCTCGAAACCC---CTGTC 117
Query 136 TCAG-TTACCATCGAATTTCTCATCGTCGATTGCTTCTGTTCCTGTCACCAAATTAAAAT 194
|| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 118 TC-GATTACCATCGAATTTCTCATCGTCGATTGCTTCTGTTCCTTTCACCAAATTAAAAT 176
Query 195 CCAGTTACAGTTCCTCCGTTTCACCGATTAGTAGGCCTCGTGTGGTTTCCGCGAGAGCTG 254
|||||||||| | ||||||||||||||||| || || ||| ||||||||||||||||||
Sbjct 177 CCAGTTACAG-T--TCCGTTTCACCGATTAGCAGACCCCGTATGGTTTCCGCGAGAGCTG 233
Query 255 CCACTGAGTCCTTCACTGATTACAGAGAAGATATCGGTGAGATACTCGGCGATGTCTCTA 314
||||||||||| ||||||||||||||||||||||||| ||||| ||||| |||||||| |
Sbjct 234 CCACTGAGTCCATCACTGATTACAGAGAAGATATCGGCGAGATTCTCGGAGATGTCTCCA 293
Query 315 TCTTTACTGCTTCAGGCCAACGCGTGCAATTCAGTGATCTCTGGGATCAGAAAGATGGAA 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TCTTTACTGCTTCAGGCCAACGCGTGCAATTCAGTGATCTCTGGGATCAGAAAGATGGAA 353
Query 375 TTGCTGCCGTTGTACTCTTGAGGCATTTCGGATGCGTTTGCTGTTGGGAACTTGCTACTG 434
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TTGCTGCTGTTGTACTTTTGAGGCATTTCGGATGCGTTTGCTGTTGGGAACTTGCTACTG 413
Query 435 CTTTGAAAGAGGCTAAACCGAGATTTGATGCGGCTGGTGTTAAATTGATAGCTGTTGGAG 494
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 414 CTTTGAAAGAGGCTAAACCGAGATTTGATGCGGCTGGTGTTAAATTGGTAGCTGTTGGTG 473
Query 495 TTGGAACTCCTGACAAGGCTCGTATACTTGCAACTCGGTTACCTTTTCCCATGGAATGTC 554
||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 474 TTGGAACTCCTGATAAGGCTCGTATACTTGCTACTCGGTTACCTTTTCCGATGGAATGTC 533
Query 555 TTTATGCGGATCCTGAACGCAAGGCATATGATGTTCTTGGTTTATACT-TCGGTTTGGGC 613
|||||||||||||||||||||||||||||||||||||||||||||||| | |||| || |
Sbjct 534 TTTATGCGGATCCTGAACGCAAGGCATATGATGTTCTTGGTTTATACTATGGGTTAGGAC 593
Query 614 CGCACTTTCTTCAACCCAGCTAGCACCAAGGTCTTCTCAAGATTTAGCGAGATTCGAGAA 673
| ||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||
Sbjct 594 GG-ACTTTCTTCAACCCAGCTAGCGCTAAGGTCTTCTCAAGATTTAACGAGATTCGAGAA 652
Query 674 GCAACAAAAAATTACACCATAGAAGCCACTCCTGAAGACAGAAGCAGTGTGTTGCAACAG 733
|| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 653 GCCACAAAGAATTACACCATAGAAGCTACTCCTGAAGACAGAAGCAGTGTTTTGCAACAG 712
Query 734 GGAGGTACGTTTGTGTTCAGAGGCAAGAAATTATTGTACGGTCGAAAAGACGAAGGCACG 793
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 713 GGAGGTACGTTTGTGTTCAGAGGCAAGAAACTGTTGTACGGTCGAAAAGACGAAGGCACT 772
Query 794 GGAGATCATCCATCTCTGGATGATGTCATTAATGTCTGCTGCAAAGCCACTGTTGCTTGA 853
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 773 GGAGATCATCCATCTCTGGATGATGTCATCAATGTCTGCTGCAAAGCCACTGTCGCTTGA 832
Query 854 AACATATGGGATCAAAGTCTCTCTGGTTTGTCCTCATACTTAAAAATCACTGTATATTTG 913
||||||| |||||||||||||| | | || ||||||||||||||
Sbjct 833 AACATATTGGATCAAAGTCTCT-------------A-A---AA---TCACTGTATATTTG 872
Query 914 TAGCTATGAAATAATGTCTATATTTCTTTAAGCTTTGGAAAAAGTATCAACACTAAGAAG 973
||||||||||||| |||||||||||||| ||| |||||| |||||||||||||| |||||
Sbjct 873 TAGCTATGAAATAGTGTCTATATTTCTT-AAGTTTTGGAGAAAGTATCAACACTCAGAAG 931
Query 974 TTAGAGCAACATATGTCCAAGTCCAGTCTCTCTCAC-C-GCTCATGTAGATTTTTGTAAG 1031
| ||||||||||||||||||||||| ||||||||| | | | || | ||||| |||||
Sbjct 932 TAAGAGCAACATATGTCCAAGTCCAATCTCTCTCATACAGATTAT-TCGATTTG-GTAAG 989
Query 1032 ATGTCGACAATTCATTGAAACCACACAAGTCTTTTCTAATGTAAT----G-CAAGACAAG 1086
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 990 ATGTCGACAATTCATTGAAACCACACAAGTCTTTTCTAATGTAAGACAAGACAAGACAAG 1049
Query 1087 TGTTTGGTTTGTTATTAGGATAAAATTTGTCTTTTTCACTAGTGCATAGAAAATG----- 1141
|||||||||||||||||| |||||||||||| || ||||||||||||||||| |
Sbjct 1050 TGTTTGGTTTGTTATTAGAATAAAATTTGTCGTTCTCACTAGTGCATAGAAATTAAAAAA 1109
Query 1142 TGTTTGTATTTATTTGAACTCTGCACTA 1169
||||||||||||||||||||||||||||
Sbjct 1110 TGTTTGTATTTATTTGAACTCTGCACTA 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45556885815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5