BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65850.1
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496820 jgi|Araly1|496820|fgenesh2_kg.8__2636__AT5G65850.1 1624 0.0
> Ahg496820 jgi|Araly1|496820|fgenesh2_kg.8__2636__AT5G65850.1
Length=1179
Score = 1624 bits (879), Expect = 0.0
Identities = 1086/1186 (92%), Gaps = 14/1186 (1%)
Strand=Plus/Plus
Query 4 ATGAGAACACTGCGGAGAAATGTTACGGAGAATCGTCTTACCAT---CTCCCGGCGTAGA 60
||||||| || ||||||||||||| || || | ||||||||||| | |||| || ||
Sbjct 1 ATGAGAAGACGGCGGAGAAATGTTTCGAAGGACCGTCTTACCATCAGCACCCGACGCAGT 60
Query 61 ACGGA-GAAGAAGACCTCACCGAATAAAACAGAAAAGTCAGTCCAGATCCCAGTTGATAT 119
| ||| ||||||||||||||||||| || |||||| |||||||||||||||||||||||
Sbjct 61 A-GGAGGAAGAAGACCTCACCGAATGGAATAGAAAACTCAGTCCAGATCCCAGTTGATAT 119
Query 120 CATCATCGAGATACTCCTGAGATTACCGGCAAAATCTATAGCGACATGTCGTTGCGTGTC 179
||| |||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 120 CATTATCGAGATACTCTTGAGATTGCCGGCGAAATCTATAGCGACATGTCGTTGCGTGTC 179
Query 180 GAAACTCTGGATCTCCGTAATTTGCCGTCAAGATTTCACAGAGCTGTTCTTGACCCGATC 239
||| || ||| ||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 180 GAAGCTTTGGGGCTCCGTAATTTGCCGTCAAGATTTCACGGATTTGTTCTTGACCAGATC 239
Query 240 TTTGCATCGACCGCAACTCTTATTCTGCTGCAAAAAAGATGGTAACTTGTTCTTCTTCTC 299
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 240 TTTGCATCGACCGCAACTCTTGTTCTCCTGCAAAAAAGATGGTAACTTGTTCTTCTTCTC 299
Query 300 GTCTCCTCAGCTTCAAAATCCATATGAGAACTCGTCCGCCATTTCTCTAAAGAATTTCTC 359
||| ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||
Sbjct 300 GTCACCTCAGCTTCAAAATCCATATGAGAACTCTTCCGCCATTTCTCTTATGAATTTCTC 359
Query 360 CTTATGCTATAAAATTTCGCGTCCTGTCAATGGCTTGATCTGTTTTAAACGCAAGGAAAT 419
|||| | | ||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 360 CTTAAGTTCTAAAATTTCTCGTCCTGTCAATGGCTTGATCTGTTTTAAACGTAAGGAAAC 419
Query 420 GAACGAAACAGTGACAGTGATATGTAATCCCAGCACTGGACATACCTTAAGCTTACCTAA 479
|||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||
Sbjct 420 GAACGAAACAGTGACAGTGATATGTAATCCTAGTACTGGACATACCTTAAACTTACCTAA 479
Query 480 ACCAATGAAGACGAGTATTGGGCCG-TCAAGATTTTTCGTGTATGAACCGATTCAGAAAC 538
||| | | ||||||||||||| || | || ||| |||||||||||||| || ||||||
Sbjct 480 ACC-A-G-CGACGAGTATTGGGGCGAT-GAGCTTTCTCGTGTATGAACCGGTTGAGAAAC 535
Query 539 AGTTCAAGGTATTGTTGTCATATAAAAGTGATGAGCATCAAGTTCTGACACTAGGAACTG 598
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 536 AGTTCAAGGTATTGTTGTCATATGAAAGTGAGGAGCATCAAGTTCTGACACTAGGAACTG 595
Query 599 GAGAACTGTCATGGAGAATCATCGAATGTTCCATGCCTCACATTCTTGGAATGTCTGAGA 658
||||||||||||||||||| || ||||||||||| ||||| |||| |||| |||||||||
Sbjct 596 GAGAACTGTCATGGAGAATGATTGAATGTTCCATACCTCATATTCCTGGATTGTCTGAGA 655
Query 659 TATGCATCAATGGTGTGTTGTATTATCCAGCGATCAATTTGTCTTCAGGGGATTACATTA 718
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 656 TATGCATCAATGGTGTTTTGTATTATCCAGCGATCGATTTGTCTTCAGGGGATTACATTA 715
Query 719 TCGTTTGCTTCGATGTTAGGTCAGAGAAGTTTAGATTTATTACAGTCATGGAAGAGTTCA 778
||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 716 TCGTTTGCTTCGATGCTAGGTCCGAGAAGTTTAGATTTATTACAGTCATGGAAGATTTCA 775
Query 779 TTAAAGCAGCGCATGATGGAACTCTTATAAACTACAATGGTAAATTAGCTTCACTTGTTT 838
||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 776 TTAAAGCAGCGCATGATGGAATTCTGATTAACTACAATGGTAAATTAGCTTCACTTGTTT 835
Query 839 CTGAAAGATATTGCTTTGTTGATGGACGTAGTAAGAGTATTGAGTTGTGGGTTCTACAAG 898
||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 836 CTGAAAGGGGTTGCTTTGTTGATGGACGTAGTAAAACTATTGAGTTGTGGGTTCTACAAG 895
Query 899 ATGCTGAAAAGAAGGAATGGTCGAAGCATACGTACGTATTACCCGCTTGGTGGCAGCATA 958
||||||||||| ||||||||||||||| || |||||||| ||||||||||||||| |||
Sbjct 896 ATGCTGAAAAGCAGGAATGGTCGAAGCTTATATACGTATTGCCCGCTTGGTGGCAGGATA 955
Query 959 -GGATTGGAACCCT-GAATTTACGCTTTGTTGGAGTGACTCGTACAAATGAGATTATGTT 1016
|| |||||||||| || |||||||||||||||||||||||||||||| || ||||||||
Sbjct 956 TGG-TTGGAACCCTCGA-TTTACGCTTTGTTGGAGTGACTCGTACAAACGAAATTATGTT 1013
Query 1017 GTCGCCGTGCTATCAAACAGTGCCTTTCGACGTCTACTACTTCAATATTGAGAGAAAGAC 1076
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1014 GTCGCCGTGCTATCAAACAGTGCCTTTCGACGTCTTCTACTTCAATATTGAGAAAAAGAC 1073
Query 1077 GATGATGAGCGTTGCAATACAAGGAATGGAAGCGTTTCAGGGTCACTTAGTCTTCACATA 1136
|||||| || |||||||||||||||||||||||||||||||||||| ||||| |||| ||
Sbjct 1074 GATGATAAGTGTTGCAATACAAGGAATGGAAGCGTTTCAGGGTCACATAGTCCTCACCTA 1133
Query 1137 TTTAGACCATGTAGAAAACGTGAAGCTTCTGCATAACATGTTTTAA 1182
||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1134 TTTAGACCATGTAGAAAACGTGAAGCTTCTGCAAAACATTTTTTAA 1179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48492350424
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5