BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65860.1
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496822 jgi|Araly1|496822|fgenesh2_kg.8__2638__AT5G65860.1 1378 0.0
> Ahg496822 jgi|Araly1|496822|fgenesh2_kg.8__2638__AT5G65860.1
Length=1280
Score = 1378 bits (746), Expect = 0.0
Identities = 961/1056 (91%), Gaps = 49/1056 (5%)
Strand=Plus/Plus
Query 14 CTCCTATTATCTCATGTTCCATT-GTTTGTTGATTTC-AATTTGAAATATTAGTTTC-TT 70
||||||||||||||||||||||| |||||| | ||| |||||||||||||| |||| ||
Sbjct 1 CTCCTATTATCTCATGTTCCATTATTTTGTT-AATTCTAATTTGAAATATTAATTTCGTT 59
Query 71 TCTTCTTCCCTTCATTCCTTCAACTTTTATACCATTTTCCTGTTATCTATTGATTTGAAA 130
||||||| || | | | || || | ||| ||||||||||||||||| |||
Sbjct 60 TCTTCTT-CC-T-A-----T--AC-----TA--A-TTTACTGTTATCTATTGATTTCAAA 101
Query 131 GTTTT-AATTTTTAAGAGGCGGTGATGACAAAAAACATTTCTCGATGCTGAAACTTACTC 189
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 102 GTTTTAAATTTTTTAGAGGCGGTGATGACAAAAAACATTTCTCGATGCTGAAACTTACTC 161
Query 190 GAGAGACCAAATCACTCTTGTAATCTTTCGTGATGCTTGTTTTTATGCGTGTCTGAGCCT 249
||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 162 GAGGGACCAATTCACTCTTGTAATCTTTCATGATGCTTGTTTTTATGCGTGTCTGAGCCT 221
Query 250 AAACCAAA-AAATCTT-TCATTTATGCTTTGATTATCATAGATCCCAATTTATGCGTTTC 307
||| ||| | || ||||||||| ||||||||||||||||| | | |
Sbjct 222 AAA--AAATGCTTTTTCTCATTTATGATTTGATTATCATAGATCTC-A---A-------- 267
Query 308 TTTTATTGCTTTTCAATTTGTAATGCGAGTTTTGCTTTATTTT-GTCCAGCCATGGAAGA 366
|||| ||||||||||||| |||| ||||||||||| ||||| | |||||||||||||
Sbjct 268 -TTTA-TGCTTTTCAATTTCTAATTAGAGTTTTGCTTCATTTTCAT-CAGCCATGGAAGA 324
Query 367 AGCAGATCAGTTATGTTTAGCTGCTAAATCCGGCGACTTGAAAAAGGTTCAAACTTTAAT 426
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 325 AGCAGATCAGTTATGTTTAGCTGCTAAATCCGGCGACTTGAAAAAGGTTCAATCTTTAAT 384
Query 427 TTACTCCGGCGCCGACGTTACTCACTTTGATAACGACGGTTTAACGCCGTTAATGCACGC 486
|||||||||||||| ||||||||||||| || |||||| |||||||||||||||||||
Sbjct 385 AAACTCCGGCGCCGACCTTACTCACTTTGACAAGGACGGTCTAACGCCGTTAATGCACGC 444
Query 487 CGCTAAAATCGGAAACGCAGAGATAGTAACGGCGTTACTCGAATCCGGAGCTCCATGGAA 546
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CGCTAAAATCGGAAACGCGGAGATAGTAACGGCGTTACTCGAATCCGGAGCTCCATGGAA 504
Query 547 CGCATTATCTCCATCAAATCTCTCAGCAGGAGATTTCGCCATGGAAGCAGGACATCAAGA 606
||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 505 CGCATTAACTCCATCAAATCTCTCAGCGGGAGATTTCGCCATGGAAGCAGGACACCAAGA 564
Query 607 AA-CTTTCGATCTTCTTCTCAAAACCGGGATCCAATCAGAGCTAATCTTAGGAACAATCG 665
|| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 565 AACCTTT-GATCTTCTTCTCAAAACCGGAATCCAATCAGAGCTAATCTTAGGAACAATCG 623
Query 666 CAAGAAACCAAACAAAGAACGAATATTCTAATCAAGAATATCTTCAAGA-CAGAGTTAGT 724
| ||||||||||| |||||||| || ||||||||||||||||||||||| | ||||||||
Sbjct 624 CGAGAAACCAAACCAAGAACGAGTACTCTAATCAAGAATATCTTCAAGATC-GAGTTAGT 682
Query 725 TTCAGTGAAGACAAGTTAATGGATAGTGAAAGCAAAGGTGTGATGATGGCTTGGGAAAAA 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 TTCAGTGAAGACAAGTTAATGGATAGTGAAAGCAAAGGTGTGATGATGGCTTGGGAAAAA 742
Query 785 CCATTAATGGAAGCTCACGCTAAAGCTATTTGTCTCAACGGTGGTCACATTCTTAACGTT 844
||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 743 CCATTAATGGAAGCTCACGCTAAAGCTATTTGTATCAATGGTGGTCACATTCTAAACGTT 802
Query 845 GGTTTCGGTATGGGACTTGTCGATACAGCGATTCAACGATACAATCC-GGTTAAACACAC 903
|| ||||||||||||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct 803 GGATTCGGTATGGGACTTGTCGATACAGCGATTCGACGATACAATCCTAG-TAAACACAC 861
Query 904 GATCATTGAAGCTCATCCTGAAGTTTATAAGCGTATGATTGAATCTGGTTGGGGAGAGAA 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 GATCATTGAAGCTCATCCTGAAGTTTATAAGCGTATGATTGAATCTGGTTGGGGAGAGAA 921
Query 964 AGAGAATGTGAAGATTGTTTTTGGAAGATGGCAAGATGTTCTTGATAAGCTTGATGATAA 1023
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 922 AGAGAATGTGAAGATTGTTTTTGGAAGATGGCAAGATGTTCTTGATAAGCTTGATGATGA 981
Query 1024 TTCTTTTGATGGGATCTTTTTTGATACTTATGGTGA 1059
||| |||||||||||||| ||||| |||||||||||
Sbjct 982 TTCGTTTGATGGGATCTTCTTTGACACTTATGGTGA 1017
Score = 446 bits (241), Expect = 3e-124
Identities = 257/264 (97%), Gaps = 3/264 (1%)
Strand=Plus/Plus
Query 1091 CATCTTCCGA-GGCTGTTGAAGCCTGATGGTG-TTTATTCGTATTTCAATGGGTTTTGTG 1148
|||||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||
Sbjct 1018 CATCTTCCGAGGGCTGTTGAAGCCTGATGG-GATTTATTCGTTTTTCAATGGGTTTTGTG 1076
Query 1149 GAAGCAACGCGTTTTTTCATGTTGTGTATTGCAATTTGGTGACTTTGGAGATTGAGAATT 1208
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GGAGCAATGCGTTTTTTCATGTTGTGTATTGCAATTTGGTGACTTTGGAGATTGAGAATT 1136
Query 1209 TAGGGTTTAGCACTCAGTTGATTCCATTGCCGGTTAAGGATTGTCTTGGGGATGAAGTTT 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TAGGGTTTAGCACTCAGTTGATTCCATTGCCGGTTAAGGATTGTCTTGGGGATGAAGTTT 1196
Query 1269 GGGAAGGTGTCAAGCAAAAGTATTGGCAGCTTGATACTTATTATCTCCCTGTTTGTCAGT 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GGGAAGGTGTCAAGCAAAAGTATTGGCAGCTTGATACTTATTATCTCCCTGTTTGTCAGT 1256
Query 1329 TTAGTGACTGAAGAAGTTTTATGA 1352
| ||||||||||||||||||||||
Sbjct 1257 TCAGTGACTGAAGAAGTTTTATGA 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316689370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5