BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G65870.1

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg887840 jgi|Araly1|887840|Al_scaffold_0334_2                       322    2e-87
  Ahg332802 jgi|Araly1|332802|fgenesh1_pm.C_scaffold_8002145           322    2e-87


> Ahg887840 jgi|Araly1|887840|Al_scaffold_0334_2
Length=234

 Score =  322 bits (174),  Expect = 2e-87
 Identities = 215/235 (91%), Gaps = 2/235 (1%)
 Strand=Plus/Plus

Query  86   ATGGTTAAGTTCACAACTTTCCTCTGCATCATCGCTCTTCTTCTCTGCTCCACGCTAACA  145
            |||| ||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCTAATTTCACAACTTTCTTCTTCATCATCGCTCTTCTTCTCTGCTCCACGCTAACA  60

Query  146  CACGCATCAGCTCGGCTCAATCCAACATCCGTTTATCCAGAAGAAAACTCCTTCAAGAAA  205
             |||||||||| ||||||| ||| || ||||||||||| ||||| | |||| ||||||||
Sbjct  61   TACGCATCAGCCCGGCTCACTCCGACCTCCGTTTATCCTGAAGATATCTCCGTCAAGAAA  120

Query  206  CTAGAAC-AGGGAGAGGTAATCTGTGAAGGTGTTGGAGAAGAAGAATGCTTCTTGATACG  264
             | |||| |||| |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct  121  ATGGAACAAGGG-GAGGGAAACTGTGAAGGTGTTGGAGAAGAAGAATGCTTCTTGATACG  179

Query  265  AAGAACTTTAGTTGCTCACACTGATTACATCTACACTCAAAACCACAATCCCTAA  319
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  180  AAGAACTTTAGTTGCTCACACTGATTACATCTACACTCAAGACCACAATCCCTAA  234


> Ahg332802 jgi|Araly1|332802|fgenesh1_pm.C_scaffold_8002145
Length=234

 Score =  322 bits (174),  Expect = 2e-87
 Identities = 215/235 (91%), Gaps = 2/235 (1%)
 Strand=Plus/Plus

Query  86   ATGGTTAAGTTCACAACTTTCCTCTGCATCATCGCTCTTCTTCTCTGCTCCACGCTAACA  145
            |||| ||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCTAATTTCACAACTTTCTTCTTCATCATCGCTCTTCTTCTCTGCTCCACGCTAACA  60

Query  146  CACGCATCAGCTCGGCTCAATCCAACATCCGTTTATCCAGAAGAAAACTCCTTCAAGAAA  205
             |||||||||| ||||||| ||| || ||||||||||| ||||| | |||| ||||||||
Sbjct  61   TACGCATCAGCCCGGCTCACTCCGACCTCCGTTTATCCTGAAGATATCTCCGTCAAGAAA  120

Query  206  CTAGAAC-AGGGAGAGGTAATCTGTGAAGGTGTTGGAGAAGAAGAATGCTTCTTGATACG  264
             | |||| |||| |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct  121  ATGGAACAAGGG-GAGGGAAACTGTGAAGGTGTTGGAGAAGAAGAATGCTTCTTGATACG  179

Query  265  AAGAACTTTAGTTGCTCACACTGATTACATCTACACTCAAAACCACAATCCCTAA  319
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  180  AAGAACTTTAGTTGCTCACACTGATTACATCTACACTCAAGACCACAATCCCTAA  234



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19421194801


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5