BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G65880.1

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg918394 jgi|Araly1|918394|Al_scaffold_0008_3145                    272    1e-72


> Ahg918394 jgi|Araly1|918394|Al_scaffold_0008_3145
Length=183

 Score =  272 bits (147),  Expect = 1e-72
 Identities = 169/179 (94%), Gaps = 3/179 (2%)
 Strand=Plus/Plus

Query  101  ATGTTTCGAAGGAACAGGTTTCTGTCTTTGCCAATGGTGATCGGTGCAGTTGTGATTGGT  160
            |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct  1    ATGTTTCGGAGGAACAGGTTTCTGTCTTTGCCAATGGTGGTCGGAGCAGTTGTGATTGGT  60

Query  161  GTGGTTTCAGGGAAAGCTATTTTCGGGCCTCCGCTTGATCAGTACTGGAAAGAGAAGCTC  220
            ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct  61   GTGGTTTCAGGGAAAGCGATTTTCGGACCTCCGCTTGATCAGTACTGGAAAGAGAAGCTC  120

Query  221  GAACGAGAAGAAGCTGTTGTTGCCAAGGAAGAAGTCATTGAAAAGAGCTCAGATTCATC  279
            ||| ||||||||||||||||||||||||| |   |||||||||||||||||||||||||
Sbjct  121  GAAGGAGAAGAAGCTGTTGTTGCCAAGGACG---TCATTGAAAAGAGCTCAGATTCATC  176



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16483214448


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5