BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65900.1
Length=2223
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496826 jgi|Araly1|496826|fgenesh2_kg.8__2642__AT5G65900.1 2237 0.0
> Ahg496826 jgi|Araly1|496826|fgenesh2_kg.8__2642__AT5G65900.1
Length=1867
Score = 2237 bits (1211), Expect = 0.0
Identities = 1401/1492 (94%), Gaps = 15/1492 (1%)
Strand=Plus/Plus
Query 540 gaagaagaaaaaaaaTTGGAAGAAACTAGCATAATGACTAATAAAACGTTTGAGTCATTG 599
||||||||| | ||| |||| ||||| || |||||||||||| |||||||||||||||||
Sbjct 385 GAAGAAGAAGACAAAGTGGAGGAAACAAGTATAATGACTAATGAAACGTTTGAGTCATTG 444
Query 600 TCATTATCTGATAACACTTATAAATCTATCAAGGAGATGGGTTTTGCACGCATGACTCAG 659
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TCATTATCTGATAACACCTATAAATCTATCAAGGAGATGGGTTTTGCACGCATGACTCAG 504
Query 660 ATACAAGCTAAAGCAATTCCACCATTGATGATGGGAGAAGATGTACTTGGAGCTGCCAGG 719
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 505 ATACAAGCTAAAGCAATTCCACCATTGATGATGGGAAAAGATGTACTTGGAGCTGCCAGG 564
Query 720 ACCGGTTCTGGTAAAACCTTAGCTTTTCTTATTCCTGCTGTTGAGCTTCTTTACCGTGTT 779
|||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||
Sbjct 565 ACCGGTTCTGGTAAAACCTTAGCTTTTCTTATTCCTGCTGCAGAGCTTCTATACCATGTC 624
Query 780 AAGTTTACTCCTCGCAATGGAACTGGTGTTCTTGTTATTTGCCCAACAAGAGAGCTTGCT 839
|||||||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct 625 CGGTTTACTCCTCGCAATGGAACTGGTGTTATCGTCATTTGCCCAACAAGAGAGCTTGCT 684
Query 840 ATTCAGTCTTATGGAGTGGCAAAAGAACTTCTTAAGTATCATTCACAGACTGTGGGAAAA 899
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 ATTCAGTCTTATGGAGTAGCAAAAGAACTTCTTAAGTATCATTCACAGACTGTGGGAAAA 744
Query 900 GTTATTGGCGGTGAGAAAAGAAAGACAGAAGCTGAGATTCTTGCGAAAGGTGTTAATTTA 959
||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||
Sbjct 745 GTTATTGGCGGTGAGAACAGAAAGAAAGAAGCTGAGATTCTTGCCAAAGGTGTTAATTTA 804
Query 960 TTAGTAGCTACCCCTGGAAGACTTCTCGACCACCTTGAAAATACTAATGGTTTTATTTTC 1019
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||
Sbjct 805 TTAGTAGCTACCCCTGGAAGGCTTCTCGACCACCTTGAAAATACAAATGGTTTTGTATTC 864
Query 1020 AAGAACTTAAAG-TTTCTTGTAATGGATGAGGCTGATAGGATATTGGAACAGAACTTTGA 1078
|||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 AAGAACTTGAAGCTTT-TTGTAATGGATGAGGCTGATAGGATATTGGAACAGAACTTTGA 923
Query 1079 AGAAGACCTCAAGAAGATT-TTGAACCTTCTACCAAAGACTAGACAGACGTCACTATTTT 1137
||| ||||| ||||||||| || ||| |||||||||||||||||||||||||||| ||||
Sbjct 924 AGAGGACCTGAAGAAGATTATTAAAC-TTCTACCAAAGACTAGACAGACGTCACTGTTTT 982
Query 1138 CAGCCACACAGAGCGCAAAGGTTGAGGATCTTGCTCGGGTGTCACTTACCTCACCTGTTT 1197
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 983 CCGCCACACAGAGCGCAAAGGTTGAGGATCTTGCTCGGGTGTCACTTGCCTCACCTGTTT 1042
Query 1198 ATATTGATGTGGATGAAGGACGAAAAGAGGTTACAAATGAAGGCTTGGAGCAAGGTTATT 1257
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1043 ATATCGATGTGGATGAAGGACGAAAAAAGGTTACAAATGAAGGCTTGGAGCAAGGTTATT 1102
Query 1258 GCGTTGTGCCAAGTGCGATGCGGTTACtt-tttttACTTACCTTCTTGAAGAGATTCCAA 1316
||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||
Sbjct 1103 GCGTTGTGCCAAGTGGGATGCGGTTA-TTATTTTTACTTACCTTCTTGAAGAGATTCCAT 1161
Query 1317 GGGAAAAAGAAAATTATGGTGTTTTTCTCTACATGCAAGTCGACAAAGTTCCACGCCGAG 1376
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1162 GGGAAAAAGAAAATCATGGTGTTTTTCTCTACATGCAAATCGACAAAGTTCCACGCCGAA 1221
Query 1377 CTCTTTCGATATATCAAATTCGATTGCCTTGAAATCCGTGGAGGGATAGACCAGAACAAA 1436
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1222 CTCTTTCGATATATCAAATTAGATTGCCTTGAAATCCGTGGAGGGATAGACCAGAGCAAA 1281
Query 1437 AGAACTCCAACATTTTTGCAATTCATAAAGGCGGAAACCGGTATTTTGTTGTGTACTAAT 1496
|||||| ||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1282 AGAACTTCAACATTATTCCAATTCATCAAGGCGGAAACCGGTATTTTGTTGTGTACTAAT 1341
Query 1497 GTCGCTGCCCGAGGTCTTGATTTTCCTCATGTGGACTGGATTGTGCAGTATGATCCTCCT 1556
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1342 GTTGCTGCCCGAGGTCTTGATTTTCCTCATGTGGACTGGATTGTGCAATATGATCCTCCA 1401
Query 1557 GATAACCCAACGGATTATATTCATCGAGTTGGTAGAACAGCTCGTGGTGAAGGAGCAAAA 1616
|||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1402 GATAACCCAACGGAATATATTCATAGAGTTGGTAGAACAGCTCGTGGAGAAGGAGCAAAA 1461
Query 1617 GGAAAGGCTCTGCTTGTCCTAACTCCACAGGAGTTGA-AGTTTATACAGTATCTCAAGGC 1675
|||||||||||||||||||| |||||| | ||||| | ||||||| ||||||||||||||
Sbjct 1462 GGAAAGGCTCTGCTTGTCCTTACTCCAGATGAGTT-ACAGTTTATTCAGTATCTCAAGGC 1520
Query 1676 GGCGAAAATTCCTGTTGAGGAACATGAATTTGAAGAAAAGAAATTGCTCGATGTGAAACC 1735
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
Sbjct 1521 GGCGAAAATTCCTGTTGAGGAACATGAATTTGAAGAAGGGAAATTGCTCGACGTGAAATC 1580
Query 1736 TTTTGTGGAGAATTTGATATCTGAAAACTATGCATTGAAGGAGTCAGCAAAAGAAGCATA 1795
|||| ||||| ||||||||||| ||||||||||||| || ||||||||||||||||||||
Sbjct 1581 TTTTCTGGAGGATTTGATATCTAAAAACTATGCATTAAACGAGTCAGCAAAAGAAGCATA 1640
Query 1796 CAAGACATACATTTCAGGATATGATTCTCACTCTATGAAAGATGTCTTTAATGTTCACCA 1855
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1641 CAAGACTTACATTTCAGGATATGATTCTCACTCTATGAAAGACATCTTTAATGTTCACCG 1700
Query 1856 ACTCAATCTC-ACGGAGGTTGCGACTTCGTTTGGTTTCTCAGATCCTCCCAAAGTTGCTC 1914
|||| ||||| | |||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1701 ACTCGATCTCCA-GGAGGTTGCGGCTTCGTTCGGTTTCTCAGATCCTCCCAAAGTTGCTC 1759
Query 1915 TGAAGATAGATCGAGGAGGGTACA-GAAGTAAGAGAGAACCGGTTAATAAGTTTAAGAGA 1973
|||||| ||||||||||||||||| || |||||||||||||||||||||||||||| |||
Sbjct 1760 TGAAGACAGATCGAGGAGGGTACAAGA-GTAAGAGAGAACCGGTTAATAAGTTTAACAGA 1818
Query 1974 GGTCGTGGTGGTGGTAGACCCGGCGGTAAAAGCAAGTTCGAGAGGTACTAAA 2025
|||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1819 GGTCGTGGTGGT---AGACGCGGCGGTAAAAGCAAGTTCGAGAGGTACTAAA 1867
Score = 370 bits (200), Expect = 3e-101
Identities = 306/354 (86%), Gaps = 19/354 (5%)
Strand=Plus/Plus
Query 50 AATTTCAGACGAATTCCGATTTCTTAATCAAAAATCCGATAAGAGCTTTGGATTTGGCGG 109
|||| |||||||||| ||||||| | |||| | |||||||||||||||||||| |
Sbjct 25 AATTGCAGACGAATTTCGATTTC----T---AAATTCAATAAGAGCTTTGGATTTGGCTG 77
Query 110 CGAATAAGAAAACATGGCGAATTTGGATATGGAGCAACATTCATCcgaaaacgaagagat 169
|||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 78 CGAATAAGAAAACATGGCGAATTTGGATTTGGAGCAGCATTCATCTGAAAACGAAGAGAT 137
Query 170 taagaagaagaagcataagaaaagagcgagagacgaagctaagaaactaaagcAGCCAGC 229
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 138 TAAGAAGAAGAAGCATAAGAAAAGAGCGAGAGACGAAGCTAAGAAACTAAAGCAGCGAGA 197
Query 230 AAT-G--GAAGAAGAACCCGATCATGAAGATGGTGATGCCAAAGAGAACAATGCGTTAAT 286
||| | |||||| ||||||| |||||||||||||||| | |||||||||| ||||| |
Sbjct 198 AATTGATGAAGAAAAACCCGAGCATGAAGATGGTGATGACGAAGAGAACAAACCGTTAGT 257
Query 287 TGACgaagaaccgaagaagaagaagaagaagaaaaataagaagCGTGGAGATACTGATGA 346
||| |||||||||||||||||||||||| ||| | ||||||||||| |||||||
Sbjct 258 TGAAGAAGAACCGAAGAAGAAGAAGAAGCT-AAA-----GCAGCGTGGAGATGCTGATGA 311
Query 347 TG--GA-GAGGACGAAGCGGTAGCagaagaagagccgaagaagaagaagaagaa 397
| | || ||||||| | || ||||||||||||||||||||||||||| |||
Sbjct 312 CGATGCTGATGACGAAGAGATAACAGAAGAAGAGCCGAAGAAGAAGAAGAGGAA 365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83684268265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5