BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65920.1
Length=1984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496828 jgi|Araly1|496828|fgenesh2_kg.8__2644__AT5G65920.1 2734 0.0
> Ahg496828 jgi|Araly1|496828|fgenesh2_kg.8__2644__AT5G65920.1
Length=1885
Score = 2734 bits (1480), Expect = 0.0
Identities = 1725/1839 (94%), Gaps = 34/1839 (2%)
Strand=Plus/Plus
Query 144 TTTTTGTTCTGTTCCGAGATTTCAAGGTTCACTATCGATTCTGAAACTCTTGGAACAATC 203
||||| ||||||||| ||||||||||||| |||||| |||||| ||||| |||||||||
Sbjct 64 TTTTT-TTCTGTTCCTAGATTTCAAGGTTTACTATC--TTCTGAGACTCTGGGAACAATC 120
Query 204 CAGATTCTTGGTTAGCAGGTGGGGA-AGCATTAATCATGTATTTATGATACACTGCTCCA 262
|||||| ||||||||||||| |||| ||||||||||||||||||||||||||| |||| |
Sbjct 121 CAGATTTTTGGTTAGCAGGT-GGGAGAGCATTAATCATGTATTTATGATACACCGCTCTA 179
Query 263 TTATTATTACGAGAGAGTTGAAAGTTTCCTTTTTGACTCGTTTTTAAAGGC-AAGGAAGA 321
|||||||||| ||||||||| |||||||||||||| |||||||||| || ||||||||
Sbjct 180 TTATTATTAC--CAGAGTTGAATGTTTCCTTTTTGAC-CGTTTTTAAAAGCTAAGGAAGA 236
Query 322 AGAAAGACTTTGTTTTTAAAATGCCAATGTTTCAGCCTTCTAAGAACGGTGGGTTTGATG 381
||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 237 AGAAAGACTTTGTCTTTAAAATGCCAATGTTTCAGCCTTTTAAGACCGGTGGGTTTGATG 296
Query 382 GGCATATCTTAGATCTACACTCGGCGGTTAAAGACGGTGT--T---C--TT--GGCGGCG 432
|||||||||||||||||||| ||||||||||||||||||| | | || |||||||
Sbjct 297 GGCATATCTTAGATCTACACACGGCGGTTAAAGACGGTGTGCTCGGCGGTTGCGGCGGCG 356
Query 433 GAGATGGGAAATTTCTGGTGGTTGTTACCGATGAGAAGAAGAAATTGGATTTGAAGGAGA 492
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 357 GAGATGGGAAATTTGTGGTGGTTGTTACCGATGAGAAGAAGAAATTGGATTTGATGAAGA 416
Query 493 TGATTTCTGAGCTGGAATTACCTGAAATACCCTCTGTTTTCATCTGTCCTATCTCTCTAG 552
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 417 TGATTTCTGAGCTGGAATTACCTGAAATACCCTCTGTTTTCATCTGTCCAATCTCTCTAG 476
Query 553 AGCCGATGCAAGATCCAGTGACCTTGTGTACTGGTCAAACCTACGAGAGGTCCAACATTC 612
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 477 AGCCGATGCAAGATCCAGTGACCTTGTGTACTGGTCAAACCTACGAGAGGTCTAACATTC 536
Query 613 TCAAATGGTTCAATATAGGGCATTGTACTTGCCCAACGACGATGCAAGAGCTTTGGGATG 672
|||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 537 TCAAATGGTTTAATTTAGGGCATTGTACATGCCCAACGACGATGCAAGAGCTTTGGGATG 596
Query 673 ATTTGGTCACTCCTAACAAGACTCTTCACCAATTGATCTACACTTGGTTTTCACAGAAGT 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 597 ATTTGGTCACTCCTAACAAGACTCTTCACCAATTGATCTACACTTGGTTTTCACAAAAGT 656
Query 733 ATGTTTTGATGAAGAAACGATCTGAAGATGTGCAAGGACGTGCTATTGAGAT-TCTGGGT 791
|||||||||||||||||||||||||||||||||||||| | ||||||||||| | |||||
Sbjct 657 ATGTTTTGATGAAGAAACGATCTGAAGATGTGCAAGGAAGAGCTATTGAGATAT-TGGGT 715
Query 792 ACGTTGAGAAAGGCTAAAGGGAAAGCAAAGGTTCATGCTTTAAGCGAGCTTAAGCAAGTT 851
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ACATTGAGAAAGGCTAAAGGGAAAGCAAAGGTTCATGCTTTAAGCGAGCTTAAGCAAGTT 775
Query 852 GTGATGGCTCACGCTATTGCTAAGAAGACTGTTGTTGATGAAGGTGGAGTCTTTGTGATC 911
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GTGATGGCTCACACTATTGCTAAGAAGACTGTTGTTGATGAAGGTGGAGTCTTTGTGATC 835
Query 912 TCTTCTCTTTTAAGTCCTTTTACTTCTCACGCTGTTGGATCTGAGGCTATAGCTATTCTT 971
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 836 TCTTCTCTTTTAAGTCCTTTTACTTCTCATGCTGTTGGATCTGAGGCTATCGCGATTCTT 895
Query 972 GTTAATCTTGAGCTTGACTCTGATTCCAAAGCTGGATTGATGCAACCAGCTAGGGTCTCG 1031
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 896 GTTAATCTTGAGCTTGATTCTGATTCCAAAGCTGGATTGATGCAACCAGCTAGAGTTTCG 955
Query 1032 TTGATGGTTGATATGTTGAATGATGGTTCGATTGAAACTAAGATCAATTGTGCTAGATTG 1091
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 956 TTGATGGTTGATATGTTGAATGATGGTTCGATTGAAACTAAAATCAATTGTGCTAGATTG 1015
Query 1092 ATTGGAAGGTTGGTGGAGGAGAAAGGTTTTAGAGCAGAGCTTGTTTCTAGTCATAGTTTG 1151
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 ATAGGTAGGTTGGTGGAGGAGAAAGGTTTTAGAGCAGAGCTTGTTTCTAGTCATAGTTTG 1075
Query 1152 CTTGTTGGATTAATGAGATTGGTTAAAGATAGGAGACGAAGAAACGGCGTTTCGCCTGCG 1211
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1076 CTTGTTGGATTAATGAGATTGGTTAAAGATAGGAGACGAAGAAACGGAGTTTCCCCTGCG 1135
Query 1212 TTAACGCTGCTCAAATCGGTTTCTGTTCATAAACAAGTTAGGAACTTGTTGGTTAGGATT 1271
|||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1136 TTAACGTTGCTCAAATCGGTTTCTGTTCATAAGCAAGTTAGAAACTTGTTGGTTAGGATT 1195
Query 1272 GGTGCAGTTCCTCAATTGGTTGATGTTTTGCCATGTTTGGATGTGGAGTGTTTAGAGTCA 1331
|| ||||||||||||||||||||||||||||||||||| ||| |||||||| || |||
Sbjct 1196 GGAGCAGTTCCTCAATTGGTTGATGTTTTGCCATGTTTAGATCCAGAGTGTTTGGAATCA 1255
Query 1332 GCTCTTTTCGTGTTGGATTCGTTATGTTTAGAAAGCGAAGGCAGAATTGCTTTGAAAGAT 1391
||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 1256 GCTCTATTCGTGTTGGATTCGTTGTGTTTAGAAAGCGAAGGGAGAATCGCTTTGAAAGAT 1315
Query 1392 TCGGTTAACACGATTCCGCATACCGTTAGGTTACTGATGAAGGTATCAGAGAAATGCACA 1451
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1316 TCGGTAAACACGATTCCGCATACCGTTAGGTTACTGATGAAGGTATCTGAGAAATGCACA 1375
Query 1452 AACTATGCGATATCGATTCTTTGGTCAGTTTGCAAATTAGCTTCTGAAGAATGTTCATCT 1511
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 1376 AACTATGCGATATCAATACTCTGGTCAGTTTGCAAATTAGCTTCTGAAGAATGTTCATCT 1435
Query 1512 CTTGCTGTTGAAGTTGGTTTGGCTGCAAAGCTTTTGCTTGTGATACAAAGTGGATGTGAT 1571
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 1436 CTTGCTGTTGAAGTTGGTTTGGCTGCAAAGCTTCTGCTTGTGATCCAAAGTGGATGCGAC 1495
Query 1572 CCAGCTTTGAAGCAACGTTCAGCTGAGCTATTGAAGTTATGTAGTCTACATTATTCAGAC 1631
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1496 CCAGCTTTGAAGCAACGTTCGGCTGAGCTATTGAAGTTATGTAGTCTACATTATTCAGAC 1555
Query 1632 TCAATGTTTATCTCCAAATGTAAACTCACAAGAACTATCCAATAAAAGACT-GATCAAGT 1690
||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||
Sbjct 1556 TCAATGTTTATCTCCAAATGTAAACTCACAAGAACAATCCAATAAAAGACTAG-TCAAGT 1614
Query 1691 TTT-CACCTTTCGGGTCAAAATCACACAAC--GGATCTGCCCCATCTTGTTGATGTATAT 1747
||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1615 TTTTCGCCTTTCGGGTCAAAATCACACAAGATGGATCTGCCCCATCTTGTTGATGTATAT 1674
Query 1748 AGAAATGAAGAAGCTCAAGGAGTATGAGAGTAAGAAACGAGTTTCGATGTGTTGAATTCT 1807
||| |||||||| | ||||||||||||| ||||||||||||| | | |||||||||||
Sbjct 1675 AGAGATGAAGAA-C--AAGGAGTATGAGACAAAGAAACGAGTTTGG-T-TGTTGAATTCT 1729
Query 1808 ATTTTGCAATGTTATTTGAATAATAATAGTTAAGTAGAAGTAAACTGTATAAATCTTTTT 1867
| ||||||||| ||| || | |||||| |||||||||| |||||||||||||||||||
Sbjct 1730 ACATTGCAATGTGATTGGA-T--TAATAGCTAAGTAGAAGCAAACTGTATAAATCTTTTT 1786
Query 1868 GTTGTGGTTGGTTCATTATTCAGTAGAAGAATAGATTGAAGAAAGGAATCAttttttt-G 1926
||| || |||||||| ||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1787 GTTATGTTTGGTTCAATATTCAGTAAAAGAATAGATTGAAGAAAGGAATCATTTTTTTTG 1846
Query 1927 GCCTCTTGTAAGTTACTAGCTGTTTGTGAGTCATAATAA 1965
||||||||||| |||||||||||||||||||||||||||
Sbjct 1847 GCCTCTTGTAACTTACTAGCTGTTTGTGAGTCATAATAA 1885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74580699710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5