BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65925.1
Length=707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358793 jgi|Araly1|358793|fgenesh1_pg.C_scaffold_8002580 573 6e-163
Ahg897864 jgi|Araly1|897864|Al_scaffold_0005_1830 99.0 4e-20
> Ahg358793 jgi|Araly1|358793|fgenesh1_pg.C_scaffold_8002580
Length=459
Score = 573 bits (310), Expect = 6e-163
Identities = 414/460 (90%), Gaps = 23/460 (5%)
Strand=Plus/Plus
Query 93 ATGAAGAAAGAAAGCAATTTAGCAAGGTTGGTGAAATCTCCGGTTCGTTTCTTGATCATG 152
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGAAAGAGAGCAACTTAGCAAGGTTGGTGAAATCTCCGGTTCGTTTCTTGATCATG 60
Query 153 GCACGTGACGCTTACATACGTAGCATGACGTCATGCTCCGCCGGTTTCATCCGCGGTGGT 212
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 61 GCACGTGACGCTTACATACGCAGCATGACGTCATGTTCCGCCGGTTTCATCCGCGGTGGT 120
Query 213 GGTGGCTCCGGCGCTTTTGGCTTACCACCCGGTAATTTCCAAATCTGCGAAGCACCAACC 272
||||||||||||| |||||||||||| |||||||||||||||||||||||||||| | |
Sbjct 121 GGTGGCTCCGGCGGTTTTGGCTTACCGGCCGGTAATTTCCAAATCTGCGAAGCACCGAGC 180
Query 273 AC-CGTTCTCCCTCGTAGCTTCACCCTAAATTCGGCCACGACAACACGTGAACGTTGCCG 331
|| | |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 181 ACTC-TTCTCCCTCGTAGCTTCACCCTGAATTCCGCCACGACAACACGTGAACGTTGCCG 239
Query 332 GTTTGTCACA--C-------GTGGCGCCAGCAGCGGAGAAATCACGGTGGAGACGACGGC 382
|||||||||| | |||||||| |||||||||||||||||||||| ||| ||||
Sbjct 240 GTTTGTCACAAGCTACTCACGTGGCGCCGGCAGCGGAGAAATCACGGTGGAAACGGCGGC 299
Query 383 TATGAAACGACAGATGGATCTCCGGAGAAATTATAGTTGTATGGTTATGGGAAGGATTGA 442
|||| |||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 300 GATGAGACGACAAATGGATCTCCGGAGAAATTACAGTTGTATGGTTATGGGAAGGATCGA 359
Query 443 TGAAGAGAAGGTTTGTGATCAGTTTGAAG-A-AG-A---G------GATTATAGCaaaaa 490
|||||||||||||||||| ||||||||| | || | | ||||||| ||||||
Sbjct 360 CGAAGAGAAGGTTTGTGATGAGTTTGAAGCAGAGGATTTGTTATTTGATTATACCAAAAA 419
Query 491 aagaaaaaTCGGTGGAGTTTTCACTACTCATCAACAATAA 530
||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 AAGAAAAATCGGTAGAGTTTTCACTACTCATCAACAATAA 459
> Ahg897864 jgi|Araly1|897864|Al_scaffold_0005_1830
Length=426
Score = 99.0 bits (53), Expect = 4e-20
Identities = 144/186 (77%), Gaps = 14/186 (8%)
Strand=Plus/Plus
Query 118 GGTTGGTGAAATCTCCGGTTCGTTTCTTGATCATGGCACGTGACGCTTACATACGTAGCA 177
||||||| || |||| |||||||||||||||||||||||||||| || ||||||||||
Sbjct 41 GGTTGGTTAAGGCTCCTTTTCGTTTCTTGATCATGGCACGTGACGCCTATATACGTAGCA 100
Query 178 TGACGTCATGCTCC-GC-C-GGTTTCATC-CGCGGTGGTGG-TGGCTCCGGCGCTTTTGG 232
| |||||||||||| || | || || | | ||||||||| | |||||| ||||||
Sbjct 101 TTACGTCATGCTCCCGCGCCGGAATCCTTAC-CGGTGGTGGATC-CTCCGG---TTTTGG 155
Query 233 CTTACCAC-CCGGTAATTTCCAAATCTGCGAAGCACCAACCACCGTTCT-CCCTCGTAGC 290
| | | | |||| || |||||||| || || | || | |||||| || ||| || |||
Sbjct 156 -TCAGCGCTCCGGAAACTTCCAAATATGTGATCCGCCTAGCACCGTCCTTCCC-CGGAGC 213
Query 291 TTCACC 296
|| |||
Sbjct 214 TTTACC 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25999829394
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5