BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65940.1
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951654 jgi|Araly1|951654|scaffold_803541.1 1877 0.0
Ahg900847 jgi|Araly1|900847|Al_scaffold_0004_1497 1243 0.0
Ahg481983 jgi|Araly1|481983|fgenesh2_kg.4__1043__AT2G30650.1 832 0.0
> Ahg951654 jgi|Araly1|951654|scaffold_803541.1
Length=1186
Score = 1877 bits (1016), Expect = 0.0
Identities = 1127/1179 (96%), Gaps = 13/1179 (1%)
Strand=Plus/Plus
Query 58 TCTGACCAGTAAGAAAGATGGCAGTCGAGATGGCCTCTCAGTCTCAGGTTTTGGTGGAAG 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TCTGACCAGTAAGAAAGATGGCAGTCGAGATGGCCTCTCAGTCTCAGGTTTTGGTGGAAG 63
Query 118 AGAAATCGAGTGTTAGAATCTTGACACTAAACAGACCAAAGCAGCTGAATGCTCTGTCCT 177
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 64 AGAAATCGAGTGTTAGAATCTTGACACTAAATAGACCAAAGCAGCTGAATGCTCTGTCCT 123
Query 178 TCCACATGATCTCTCGATTGCTGCAACTGTTCCTTGCATTTGAGGAGGACCCTAGTGTGA 237
|||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 124 TCCAAATGATCTCTCGGTTGGTGCAACTGTTCCTTGCATTTGAGGAGGACCCTAGTGTGA 183
Query 238 AACTTGTCATCCTAAAGGGTC-ATGGGAGAGCCTTTTGTGCTGGTGGCGATGTTGCAGCT 296
||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct 184 AACTTGTCATCCTAAAGGG-CAATGGAAGAGCCTTTTGTGCTGGTGGCGATGTTGCAGCT 242
Query 297 GTTGTTCGTGACATC-AATCAAGGTAACTGGAGACTCGGTGCCAATTACTTCTCATCTGA 355
||||||||||||||| || |||||||||||||||||||||||||||| |||||| |||
Sbjct 243 GTTGTTCGTGACATCGAA-CAAGGTAACTGGAGACTCGGTGCCAATTTCTTCTCCGATGA 301
Query 356 ATACATGCTCAACTATGTTATGGCCACATATAGCAAAGCTCAGGTTTCAATCTTGAATGG 415
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 302 ATACATGCTCAACTATGTTATGGCCACATATAGCAAAGCTCAGGTTTCAATTTTGAATGG 361
Query 416 TATCGTCATGGGAGGCGGAGCTGGTGTATCCGTCCATGGTCGATTTCGTATTGCAACTGA 475
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 362 TATCGTCATGGGAGGCGGAGCTGGTGTCTCCATCCATGGTCGATTTCGTATTGCAACTGA 421
Query 476 GAACACGGTTTTTGCCATGCCTGAGACAGCTCTGGGGCTCTTTCCAGATGTAGGCGCCTC 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GAACACGGTTTTTGCCATGCCTGAGACAGCTCTGGGGCTCTTTCCAGATGTAGGCGCCTC 481
Query 536 CTACTTCTTGTCAAGGCTCCCTGGtttttttGGGGAGTATGTTGGCCTCACAGGAGCTAG 595
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 482 CTACTTCTTGTCAAGGCTCCCTGGATTTTTTGGAGAGTATGTTGGCCTCACAGGAGCTAG 541
Query 596 ATTAGATGGTGCTGAAATGCTTGCTTGTGGCCTTGCAACTCATTTTGTGCCTTCAACGAG 655
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 ATTAGATGGCGCTGAAATGCTTGCTTGTGGCCTTGCAACTCATTTTGTGCCTTCAACGAG 601
Query 656 GTTGACTGCATTAGAAGCAGATCTTTGCAGAATTAATTCAAATGATCCAACTTTTGCCTC 715
|||||||||||||||| ||||||||||| || || ||||||||||||||| ||||||||
Sbjct 602 GTTGACTGCATTAGAAACAGATCTTTGCCGAGTTGGTTCAAATGATCCAACCTTTGCCTC 661
Query 716 AACAATTCTCGATGCATACACCCAGCATCCGCGCCTGAAACAGCAGAGTGCTTACCGCAG 775
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 662 AACAATTCTCAATGCATACACCCAGCATCCGCGCCTGAAACAGCAGAGTGCTTACCACAG 721
Query 776 GTTAGATGTTATTGATAGGTGTTTCTCAAGGAGAACAGTCGAAGAAATTATATCTGCACT 835
||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||||
Sbjct 722 GTTAGATGTTATTGATAGGTGCTTCTCAAAGAGAACAGTTGAAGAGATTATATCTGCACT 781
Query 836 TGAGAGAGAGGCCACTCAAGAAGCAGATGGTTGGATCTCAGCTACCATTCAAGCATTGAA 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TGAGAGAGAGGCCACTCAAGAAGCAGATGGTTGGATCTCAGCTACCATTCAAGCATTGAA 841
Query 896 GAAGGGTTCACCAGCAAGCCTTAAAATCTCTCTTAGATCGATAAGGGAAGGGCGATTGCA 955
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 842 GAAGGCTTCACCAGCAAGCCTTAAAATCTCTCTTAGATCGATAAGGGAAGGGCGACTGCA 901
Query 956 GGGGGTGGGGCAGTGTCTTATCCGCGAGTATAGAATGGTGTGTCATGTGATGAAGGGAGA 1015
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 902 GGGGGTGGGGCAGTGTCTTATCCGTGAGTATAGAATGGTGTGTCATGTGATGAAGGGAGA 961
Query 1016 AATCAGCAAAGATTTTGTGGAGGGGTGCAGAGCCATATTGGTAGACAAAGATAAGAACCC 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 AATCAGCAAAGATTTTGTGGAGGGGTGCAGAGCCATATTGGTAGACAAAGATAAGAACCC 1021
Query 1076 AAAGTGGGAGCCAAGGCGACTGGAGGACATGAAGGATAGCATGGTGGAGCAGTACTTCGA 1135
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1022 AAAGTGGGAGCCAAGGCGACTGGAGGACATGAATGATAGCATGGTAGAGCAGTACTTCGA 1081
Query 1136 GAGAGTGGA--ACGG-GAGGA-TG--A---TCTAAAGCTTCCGCCAAGGAATAACTTGCC 1186
||||||||| | | ||||| || | |||||||||||||||||| || ||||||||
Sbjct 1082 GAGAGTGGAGGAAGAAGAGGAATGGGAGGATCTAAAGCTTCCGCCAAGAAACAACTTGCC 1141
Query 1187 TGCTTTAGGGATCGCAAAGCTGTGAAGTGGAGAAGGTGA 1225
|||||||| |||||||||||||||||| |||||| ||||
Sbjct 1142 TGCTTTAGCGATCGCAAAGCTGTGAAGGGGAGAAAGTGA 1180
> Ahg900847 jgi|Araly1|900847|Al_scaffold_0004_1497
Length=1149
Score = 1243 bits (673), Expect = 0.0
Identities = 983/1130 (87%), Gaps = 32/1130 (3%)
Strand=Plus/Plus
Query 87 ATGGCCTCTCAGTCTCAGGTTTTGGTGGAAGAGAAATCGAGTGTTAGAATCTTGACACTA 146
||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||| ||
Sbjct 1 ATGGCCTCTCACTCTCAGGTTTTAGTGGAAGATAAATCCAGTGTTAGAATCTTGACATTA 60
Query 147 AACAGACCAAAGCAGCTGAATGCTCTGTCCTTCCACATGATCTCTCGATTGCTGCAACTG 206
|||||||| || || ||||||||||| | ||| ||||||||||||| ||||| ||||||
Sbjct 61 AACAGACCGAATCAACTGAATGCTCTATGCTTAGACATGATCTCTCGGTTGCTACAACTG 120
Query 207 TTCCTTGCATTTGAGGAGGACCCTAGTGTGAAACTTGTCATCC-TAAAGGGTCATGGG-A 264
|||||||||| |||||||||||||||||||||||||||||||| |||| ||||| ||| |
Sbjct 121 TTCCTTGCATATGAGGAGGACCCTAGTGTGAAACTTGTCATCCTTAAA-GGTCA-GGGAA 178
Query 265 GAGCCTTTTGTGCTGGTGGCGATGTTGC-AGCTGTTGTTCGTGACATCAAT-CAAGGTAA 322
||||||||||||||||||| || | | | | || |||||||||||||| | ||||| ||
Sbjct 179 GAGCCTTTTGTGCTGGTGGTGACGCT-CTACCTCTTGTTCGTGACATC-GTACAAGGCAA 236
Query 323 CTGGAGACTCGGTGCCAATTACTTCTCATCTGAATACATGCTCAACTATGTTATGGCCAC 382
|||||||||| ||||||| ||| ||| | |||||| ||| ||||||||| |||||||
Sbjct 237 ATGGAGACTCGCCGCCAATTTCTTAACATATCAATACACGCTTAACTATGTTTTGGCCAC 296
Query 383 ATATAGCAAAGCTCAGGTTTCAATCTTGAATGGTATCGTCATGGGAGGCGGAGCTGGTGT 442
||||||||| |||||||||| || || |||||||| ||||||||||| ||||||||| |
Sbjct 297 GTATAGCAAACCTCAGGTTTCGATTTTTAATGGTATTGTCATGGGAGGTGGAGCTGGTCT 356
Query 443 ATCCGTCCATGGTCGATTTCGTATTGCAACTGAGAACACGGTTTTTGCCATGCCTGAGAC 502
|| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 357 CTCTATCCATGGTCGATTTCGTATTGCAACTGAAAACACGGTTTTTGCAATGCCTGAGAC 416
Query 503 AGCTCTGGGGCTCTTTCCAGATGTAGGCGCCTCCTACTTCTTGTCAAGGCTCCCTGGttt 562
|| | |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 417 AGTTTTGGGACTCTTTCCAGATGTAGGCGCCTCCTACTTCTTGTCAAGACTCCCTGGATT 476
Query 563 ttttGGGGAGTATGTTGGCCTCACAGGAGCTAGATTAGATGGTGCTGAAATGCTTGCTTG 622
|||||| ||||||||||||||||| |||||||| |||||||| |||||||||||||| ||
Sbjct 477 TTTTGGAGAGTATGTTGGCCTCACTGGAGCTAGGTTAGATGGGGCTGAAATGCTTGCGTG 536
Query 623 TGGCCTTGCAACTCATTTTGTGCCTTCAACGAGGTTGACTGCATTAGAAGCAGATCTTTG 682
||| ||||||||||||||||||||||||| |||||||||||| |||||| |||||||||
Sbjct 537 TGGTCTTGCAACTCATTTTGTGCCTTCAATTAGGTTGACTGCACTAGAAGAAGATCTTTG 596
Query 683 CAGAA-TTAATTCAAATGATCCAA-CTTTTGCCTCAACAATTCTCGATGCATACACCCAG 740
|| || || ||||| |||||||| |||| | |||||||||||| ||||||||||| |||
Sbjct 597 CA-AAGTTGGTTCAAGTGATCCAAGCTTT-GTCTCAACAATTCTTGATGCATACACTCAG 654
Query 741 CATCCGCGCCTGAAACAGCAGAGTGCTTACC---G-CA-G-GTTAGATGTTATTGATAGG 794
||||| | ||| |||||| |||||||||||| | || | |||||||||||||||||||
Sbjct 655 CATCCCCACCTTAAACAGAAGAGTGCTTACCTCAGGCAAGTGTTAGATGTTATTGATAGG 714
Query 795 TGTTTCTCAAGGAGAACAGTCGAAGAAATTATATCTGCACTTGAGAGAGAGGCCACTCA- 853
|| |||||||| |||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 715 TGCTTCTCAAGAAGAACAGTCGAAGAAATTCTATCTGCACTTGAGAGAGAGACCGCTCAT 774
Query 854 -AG-AAGCAGATGGTTGGATCTCAGCTACCATTCAAGCATTGAAGAAGGGTTCACCAGCA 911
|| || || ||| |||||||||| | | || | |||||||||||||| ||||||| ||
Sbjct 775 CAGGAACCAAATGATTGGATCTCAACCATCACTGGAGCATTGAAGAAGGCTTCACCATCA 834
Query 912 AGCCTTAAAATCTCTCTTAGATCGATAAGGGAAGGGCGATTGCAGGGGGT-GGGGCAGTG 970
||||||||||| ||||||||||||||||| ||||| ||||||| || || |||| ||||
Sbjct 835 AGCCTTAAAATATCTCTTAGATCGATAAGAGAAGGAAGATTGCAAGGCGTTGGGG-AGTG 893
Query 971 TCTTATCCGCGAGTATAGAATGGTGTGTCATGTGATGAAGGGAGAAATCAGCAAAGATTT 1030
||||||||| ||||||||||||| |||||||||| | ||||||||||| |||||||| ||
Sbjct 894 TCTTATCCGTGAGTATAGAATGGCGTGTCATGTGTTCAAGGGAGAAATAAGCAAAGACTT 953
Query 1031 TGTGGAGGGGTGCAGAGCCATATTGGTAGACAAAGATAAGAACCCAAAGTGGGAGCCAAG 1090
|||||||||||||||||| |||||| |||||||||||| ||||||||||||| |||||||
Sbjct 954 TGTGGAGGGGTGCAGAGCGATATTGATAGACAAAGATAGGAACCCAAAGTGGAAGCCAAG 1013
Query 1091 GCGACTGGAGGACATGAAGGATAGCATGGTGGAGCAGTACTTCGAGAGAGTGGA--ACG- 1147
|||||| ||||||||||||||||||||||| || ||||||| ||||||||||| | |
Sbjct 1014 GCGACTAGAGGACATGAAGGATAGCATGGTAGATAAGTACTTTGAGAGAGTGGAGGAAGA 1073
Query 1148 GGAGG-ATG--A---TCTAAAGCTTCCGCCAAGGAATAACTTGCCTGCTT 1191
||||| ||| | | |||||||| ||||||||| ||||| | |||||
Sbjct 1074 GGAGGGATGGGAGGATTTAAAGCTTTTGCCAAGGAACAACTTTCATGCTT 1123
> Ahg481983 jgi|Araly1|481983|fgenesh2_kg.4__1043__AT2G30650.1
Length=1176
Score = 832 bits (450), Expect = 0.0
Identities = 615/695 (88%), Gaps = 10/695 (1%)
Strand=Plus/Plus
Query 87 ATGGCCTCTCAGTCTCAGGTTTTGGTGGAAGAGAAATCGAGTGTTAGAATCTTGACACTA 146
||||| ||||| ||||||||||||||||| |||||||| |||||| ||||||||||| ||
Sbjct 1 ATGGCATCTCAATCTCAGGTTTTGGTGGAGGAGAAATCAAGTGTTGGAATCTTGACATTA 60
Query 147 AACAGACCAAAGCAGCTGAATGCTCTGTCCTTCCACATGATCTCTCGATTGCTGCAACTG 206
|||||||| |||||||| |||||||||| |||| ||||||||||||| ||||||||||||
Sbjct 61 AACAGACCCAAGCAGCTTAATGCTCTGTGCTTCAACATGATCTCTCGGTTGCTGCAACTG 120
Query 207 TTCCTTGCATTTGAGGAGGACCCTAG-TGTGAAACTTGTCATCCTAAAGGGTCATGGGAG 265
|||||||||| ||| ||||||||| | ||||||||||||||||||||||||||| || ||
Sbjct 121 TTCCTTGCATATGAAGAGGACCCT-GCTGTGAAACTTGTCATCCTAAAGGGTCAAGGAAG 179
Query 266 AGCCTTTTGTGCTGGTGGCGATGTTGCAGCTGTTGTTCGTGACATCAAT-CAAGGTAACT 324
|||||||||||| |||||||| ||| || |||||||| | |||| | |||||||| |
Sbjct 180 AGCCTTTTGTGCAGGTGGCGACGTTCCACCTGTTGTTAATAACAT-GGTACAAGGTAAAT 238
Query 325 GGAGACTCGGTGCCAATTACTTCTCATCTGAATACATGCTCAACTATGTTATGGCCACAT 384
||||||| |||||| ||| |||| | | |||||| ||||||||||||||||||||| |
Sbjct 239 GGAGACTTGGTGCCGATTTCTTCAGAGATCAATACACGCTCAACTATGTTATGGCCACGT 298
Query 385 ATAGCAAAGCTCAGGTTTCAATCTTGAATGGTATCGTCATGGGAGGCGGAGCTGGTGTAT 444
|||||||| | ||||||||||| ||||||||||| |||||||||| ||||||||||| |
Sbjct 299 ATAGCAAACCCCAGGTTTCAATTTTGAATGGTATTGTCATGGGAGCCGGAGCTGGTGCCT 358
Query 445 CCGTCCATGGTCGATTTCGTATTGCAACTGAGAACACGGTTTTTGCCATGCCTGAGACAG 504
|| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 359 CCATCCATGGTCGATTTCGCATTGCAACTGAGAACACGGTTTTTGCCATGCCGGAGACAG 418
Query 505 CTCTGGGGCTCTTTCCAGATGTAGGCGCCTCCTACTTCTTGTCAAGGCTCCCTGGttttt 564
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 419 CTCTGGGGCTCTTTCCAGATGTAGGCGCCTCCTATTTCTTGTCAAGGCTCCCAGGATTTT 478
Query 565 ttGGGGAGTATGTTGGCCTCACAGGAGCTAGATTAGATGGTGCTGAAATGCTTGCTTGTG 624
|||| |||||||| |||||||| |||||||| |||||||| |||||||||||||| ||||
Sbjct 479 TTGGAGAGTATGTCGGCCTCACCGGAGCTAGGTTAGATGGCGCTGAAATGCTTGCATGTG 538
Query 625 GCCTTGCAACTCATTTTGTGCCTTCAACGAGGTTGACTGCATTAGAAGCAGATCTTTGCA 684
| |||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||
Sbjct 539 GTCTTGCAACTCATTTTGTGCCTTCATCGAGGTTGACAGCACTAGAAGCAGATCTTTGCA 598
Query 685 GAA-TTAATTCAAATGATCCAA-CTTTTGCCTCAACAATTCTCGATGCATACACCCAGCA 742
|| || ||||| |||||||| |||| | |||||||||||| ||||||||||| |||||
Sbjct 599 -AAGTTGGTTCAAGTGATCCAAGCTTT-GTCTCAACAATTCTTGATGCATACACTCAGCA 656
Query 743 TCCGCGCCTGAAACAGCAGAGTGCTT-ACCGCAGG 776
||| | ||| |||||| | ||| ||| ||| ||||
Sbjct 657 TCCCCACCTTAAACAGAACAGT-CTTTACCACAGG 690
Score = 503 bits (272), Expect = 2e-141
Identities = 377/426 (88%), Gaps = 13/426 (3%)
Strand=Plus/Plus
Query 777 TTAGATGTTATTGATAGGTGTTTCTC-AAGGAGAACAGTCGAAGAAATTATATCTGCACT 835
|||||||||||||||||||| ||||| || ||||||| | ||||||||||||||||||||
Sbjct 730 TTAGATGTTATTGATAGGTGCTTCTCGAA-GAGAACAATGGAAGAAATTATATCTGCACT 788
Query 836 TGAGAGAGAGGCCACTCAAGAAGC-AGATGGTTGGATCTCAGCTACCATTCAAGCATTGA 894
||||||||| |||||||||||| | ||||| |||||||| | ||||||||| ||| ||||
Sbjct 789 TGAGAGAGATGCCACTCAAGAA-CTAGATGATTGGATCTTAACTACCATTCGAGCTTTGA 847
Query 895 AGAAGGGTTCACCAGCAAGCCTTAAAATCTCTCTTAGATCGATAAGGGAAGGGCGATTGC 954
||||| ||||||| ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 848 AGAAGTCTTCACCATCAAGCCTTAAAATCTCTCTTAGATCGATAAGAGAAGGAAGATTGC 907
Query 955 AGGGGGTGGGGCAGTGTCTTATCCGCGAGTATAGAATGGTGTGTCATGTGATGAAGGGAG 1014
| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 908 AAGGGGTGGGGCATTGTCTTATCCGTGAGTATAGAATGGTGTGTCATGTGATGAAGGGAG 967
Query 1015 AAATCAGCAAAGATTTTGTGGAGGGGTGCAGAGCCATATTGGTAGACAAAGATAAGAACC 1074
| || |||||||| |||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct 968 ACATAAGCAAAGACTTTGTGCAGGGGTGCAGAGCCATATTGATAGACAAAGATAGGAACC 1027
Query 1075 CAAAGTGGGAGCCAAGGCGACTGGAGGACATGAAGGATAGCATGGTGGAGCAGTACTTCG 1134
|||||||||||||||||||||| |||||| |||||||||||||||| || |||||||| |
Sbjct 1028 CAAAGTGGGAGCCAAGGCGACTAGAGGACGTGAAGGATAGCATGGTAGATCAGTACTTTG 1087
Query 1135 AGAGAGTGGAACG-G-G-AGG-ATG--ATC-TA--AAGCTTCCGCCAAGGAATAACTTGC 1185
|||| ||||| | | | ||| ||| | || ||| ||||||||||||| |||||||
Sbjct 1088 AGAGGGTGGAGGGAGAGGAGGGATGGGAGGATATTAAGTTTCCGCCAAGGAACAACTTGC 1147
Query 1186 CTGCTT 1191
||||||
Sbjct 1148 CTGCTT 1153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53516794225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5