BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65950.1
Length=4001
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497029 jgi|Araly1|497029|fgenesh2_kg.8__2845__AT5G65950.1 6165 0.0
> Ahg497029 jgi|Araly1|497029|fgenesh2_kg.8__2845__AT5G65950.1
Length=3907
Score = 6165 bits (3338), Expect = 0.0
Identities = 3745/3937 (95%), Gaps = 45/3937 (1%)
Strand=Plus/Plus
Query 76 CAAAGGCCCGTTAAAAGCCCACGTAAAATGAATGTGTCAGATCCTTCCTTGCTCGATTCA 135
|||||||||||||||||||||||| | | ||||||||||| ||||||||||||||||
Sbjct 1 CAAAGGCCCGTTAAAAGCCCACGT---A-G--TGTGTCAGATCTTTCCTTGCTCGATTCA 54
Query 136 ACGCGTCCGAGTCTCAGACACTCCCCGGCGAGATGGAGGAATACCCGGAAGAGCTCAGGA 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 ACGCGTCCGAGTCTCAGACACTCCCCGGCGAGATGGAGGAATACCCGGAAGAGCTCAGGA 114
Query 196 CGCCACCGGTAAGTCTGGTGGCTCTCTTCGGATACGCGGAGCTACACGCGTCCATTACTA 255
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 115 CGCCGCCGGTAAGTCTGGTGGCTCTCTTCGGATACTCGGAGCTACACGCGTCCATCACTA 174
Query 256 AGTATCTCCACTCCCAGCAGCCTCCCATCAACGCTCTGGCCTTCCCCGACTTCTCTCAAA 315
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 175 AGTATCTCCACTCCCAGCAGCCTCCCATCAACGCTCTGGCCTTTCCCGACTTCTCTCACA 234
Query 316 TCTCTCTCCTCCTTGCTCATGATGATCAGATCAGCCGAACCTCCTCCTTCAGAGATCCTC 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TCTCTCTCCTCCTTGCTCATGATGATCAGATCAGCCGAACCTCCTCCTTCAGAGATCCTC 294
Query 376 TCAGCGTCT-CCGATTCTGCTTCTCCCATTCCTTCCAGATGCGGCGGTATTTTGAAACGG 434
||||||| | |||||||| | |||||||||||||||||||||||||| || || ||||||
Sbjct 295 TCAGCGT-TGCCGATTCTTCCTCTCCCATTCCTTCCAGATGCGGCGGCATCTTAAAACGG 353
Query 435 GACTGGTTGCTTAAGCATCGCACCAAGGTCCCTGCACTTGTCGCCGCCTTCTTTCCCTCA 494
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 354 GACTGGTTGCTTAAGCATCGCACCAAGGTCCCTGCACTTGTCGCGGCCTTCTTTCCCTCA 413
Query 495 CATCACATCTTCGGCGATCCAACTCAATGGCTACAGGTCTGCTCCGATCTCGACAGCCTC 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CATCACATCTTCGGCGATCCAACTCAATGGCTACAGGTCTGCTCCGATCTCGACAGCCTC 473
Query 555 AAATCCGTAATCCGTCCCAAAAACATCAAACTGGTGGTTGTCGTGGTCCAGTCTTCTCCC 614
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 474 AAATCCGTAATCCGTCCCAAATACATCAAACTGGTGGTTGTCGTGGTCCAGTCCTCTCCC 533
Query 615 CACGAGGACATTAGCGACGATCGTCTGGTGGCATTGCGAAAGCGGGCAGAATTAGATTCT 674
|| ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 534 CATGAGGAAATTAGCGAAGATCGTCTGGTGGCATTGCGAAAGCGGGCAGAGTTAGATTCT 593
Query 675 AAGTACGTGCTCTTCTTCAATTCCAGCATAGTCTCTGAACTCACGCTCTCTCTCTCCAGA 734
||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| |
Sbjct 594 AAGTACGTGCTCTTCTTCAATTCCAGCATAGACTCTGAACTCACACACTCTCTCTCC--A 651
Query 735 CTCGCTTCTGCTTTTGCAGAGTTGGCACTTTCTTATTACAGAGAAGAAGGACGGAGAATC 794
| || | ||||| ||| |||||||||||||||||||||||||||||
Sbjct 652 ---------G-----GC--ATTTGGCCCTTGCTTATTACAGAGAAGAAGGACGGAGAATC 695
Query 795 AAAAGCCGAATTGAGAAAAGGAGTTCCAATTCTCTTGATTTGAATGTTCGCTACTGTTTT 854
||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 696 AAAAGCCGAGTTGAGAAAAAGAGTTCCAATTCTCTTGATTTCAATGTTCGCTACTGTTTT 755
Query 855 AAAGTCGCTGTATATGCAGAGTTTCGTAGAGATTGGGGTGAAGCACTGAAGTTTTATGAA 914
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 756 AAAGTCGCTGTATATGCAGAGTTTCGTAGAGATTGGGGTGAAGCACTCAAGTTTTATGAA 815
Query 915 GACGCATACCATTCCTTGCACGAGATGATCGGGACATCGACTAGGTTGCCTGCAATACAA 974
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 GACGCATATCATTCCTTGCACGAGATGATCGGGACATCGACTAGGTTGCCTGCAATACAA 875
Query 975 CGCTTGGTCGAGATCAAAATCATAGCTGAGCAATTGCATTTCAAGATATCAACGCTTTTG 1034
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 876 CGCTTGGTCGAGATCAAGATCATAGCTGAGCAATTGCATTTCAAGATATCGACGCTTTTG 935
Query 1035 TTGCATGGTGGAAAACTCATAGAAGCAGTGACATGGTTTCATCAACATAAAACATCATAT 1094
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 936 TTGCATGGTGGAAAACTCATAGAAGCAGTGACATGGTTTCATCAACATAAAGCATCATAT 995
Query 1095 GAAAAGGTTGTCGGATCCACAGAATTTATTTTTCTCCATTGGGACTGGATGAGTAGGCAG 1154
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 996 GAAAAGGTTGTTGGATCCACAGACTTTATTTTTCTCCATTGGGACTGGATGAGTAGGCAG 1055
Query 1155 TTTCTTGTCTTTGCTGAGTTGCTGGAGACAAGCTCAGCAACTGGTCAGAGCTTAACATCC 1214
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1056 TTTCTTGTCTTTGCTGAGTTGCTGGAGACAAGCTCAGCAACTGGTCAGAACTTTTCATCC 1115
Query 1215 TCAAACCAAGGAACTGCGGAAATATCTTTGACTGAGTTTGAGTTTTACCCTGCCTATTAT 1274
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1116 TCGAACCAAGGAACTGCGGAAATATCTTTGACTGAGTTTGAGTTTTATCCTGCCTATTAT 1175
Query 1275 TATCAGTTGGCTGCTCATTACTTGAAGGATAAGAAATCTGCCCTGGAACTGTTGTTGTCA 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 TATCAGTTGGCTGCTCATTACTTGAAGGATAAGAAATCTGCCCTGGAACTGTTGTTGTCA 1235
Query 1335 ATGTCTGAAATAGCTCAAGAGATTGATAGCAGCTCTGCATCTATTACTCCTTCAGTCTAT 1394
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1236 ATGTCTGAAATAGCTCAAGAGATTGATACCAGCTCTGCATCCATTACTCCTTCAGTCTAT 1295
Query 1395 GTGGGTCAGTTCGCTCAGTTGCTTGAGAAGGGAGAAGCTATTACACTTCACTCTATAACG 1454
|||||||||||||||||||| ||||||||||||||| || |||| |||||||||||||||
Sbjct 1296 GTGGGTCAGTTCGCTCAGTTACTTGAGAAGGGAGAAACTCTTACTCTTCACTCTATAACG 1355
Query 1455 GATGAAGAGTACACACGGTATACAATTTCAGAAGCAAAGAGAGTTCAGGATTCCCTTCAA 1514
|||||||| |||| |||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 1356 GATGAAGAATACAGACGGTATACATTTTCAGAAGCAAAGAGATTTCAGGATTCCCTTGAA 1415
Query 1515 ATTATTGCTTGGCTGAAGAGATCTTATGAATCATTTACCAACCTTAAAGCCCAGAGGATG 1574
|||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||
Sbjct 1416 ATTATTGCTTGGCTGAAGAGATCTTATGAATCATTTACGAACCTTAAAGCGCGGAGGATG 1475
Query 1575 GCTGCTCTTTGTGCCTTTGAAGTAGCCCGGGAGTACTTTGATTTGGCTGATCCCAACAAC 1634
||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||
Sbjct 1476 GCTGCCCTTTGTGCCTTTGAACTAGCCCGGGAGTACTTTGATTCGGCTGATCCCAGCAAC 1535
Query 1635 GCAAAATTCTTTTTCGATATTGCTGCAAACTTGTACAGACAAGAAGGTTGGGTAACTTTG 1694
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1536 GCAAAATTCTTTTTCGATATTTCTGCAAACTTGTACAGACAAGAAGGTTGGGTAACTTTG 1595
Query 1695 CTCTGGGAGGTGTTGGGTTACCTGCGAGAGTGTTCGAGAAACCTTGATGCTTTGAAAGAT 1754
|||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1596 CTCTGGGAAGTGTTGGGTTACCTGCGAGAGTGTTCGAGAAATCTTGGTGCTTTGAAAGAT 1655
Query 1755 TTTGTAGAGTTTTCACTTGAAATGGTTGCCCTGCCTGTAACATCTTATGAGAATTCTGGG 1814
|||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 1656 TTTGTAGAGTTTTCACTTGAAATGGTGGCACTGCCTGTAACATCTTATGACAATTCTGGG 1715
Query 1815 AACTTAAGAAACAAAAATTATGGTCCTGGAGGTCCTGCAACAATTTCAGGAAGAGAAAGT 1874
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1716 AACTTGAGAAACAAAAATTATGGTCCTGGAGGTCCTGCAACCATTTCAGGAAGAGAAAGT 1775
Query 1875 ATACATCAAGAAGTTTTTACTCTTGTTTGTCGTGAAGCCGAGCTGTTATCATCTACCGAA 1934
|||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||
Sbjct 1776 ATACATCAAGAAGTTTTTACTCTTGTCTGTCGTGAAGCCGAGCCGTTATCCTCTACCGAA 1835
Query 1935 GGAAGTGGGTTCAAATTAGCCACTGATAGCCCTCTTCATCTCGAGATTGATCTTGTCAGT 1994
||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 1836 GGAAGTGGGTTCAAATTAGCCACCGATAGCCCTCTTCATCTTGATATTGATCTTGTCAGT 1895
Query 1995 CCTCTGAGACCTGTTCTCCTAGCTTCAGTTGCTTTTCACGATCAAATGATCAAGCCTCAC 2054
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1896 CCTCTGAGACCCGTTCTCCTAGCTTCAGTTGCTTTTCACGAGCAAATGATCAAGCCTTGC 1955
Query 2055 GCTTTGTGCTCTTTTACGTTGTCACTACTTTCTCATTTACCTCTTCCAGTTGAAATAGAT 2114
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1956 ACTTTGTGCTCTTTTACATTGTCACTACTTTCTCATCTACCTCTTCCAGTTGAAATAGAT 2015
Query 2115 CATCTAGAAGTTCAGTTTAATCAATCTACATGCAACTTTGTCATCAGAAATTCCCAGAGG 2174
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 2016 CATCTAGAAGTTCAGTTCAACCAATCTACGTGCAACTTTGTCATCAGAAATTCCCAGAGG 2075
Query 2175 CCTCTGTGGGCTTCGGCGTCTAACACTGTGAAAAGTGGTAGCCAAGTGGAGAATGCGCCA 2234
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 2076 CCTCTGTGGGCTTCTGCGTCTAACACTGTGAAAAGTGGTAGCCAAGTAGAGAATGAGCCA 2135
Query 2235 TTGCTGGTGCTTGTGCCGAATAATTGGTTAAGGTTGACATATGCAATCAAGTCTGAGCAA 2294
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2136 TCGCTGGTGCTTGTGCCGAATAATTGGTTAAGGTTGACATATGCAATCAATTCTGAGCAA 2195
Query 2295 AGCGGCAAGCTTGAGTGTCTTTCAGTTCTTGCAAAATTGGGGCCTCTTTTCACAATCTGT 2354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2196 AGCGGCAAGCTTGAGTGTCTTTCAGTTCTTGCAAAATTGGGGCCTCTTTTCACAATCTGT 2255
Query 2355 TCAAGAGCCGAGAGTCCTGCTGCAATGGAGGATTTACCTGTCTGGAAGCATGAAAATCGT 2414
|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| |
Sbjct 2256 TCAAGAGCCGAGAGTCCTGCTGCAATGGAGGAATTGCCTGTCTGGAAGCATGAGAATAGC 2315
Query 2415 GTTGAATCTCTGCCAACAAAGGACCCAGTTCTTGCAGTATTTGGCCAGAAAGCTACTCAA 2474
|| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 2316 GTGGAATCTCTGCCAACGAAGGACCCTGTTCTTGCAGTATTTGGCCAGAAAGCTACTCAA 2375
Query 2475 GTTGATGAACCCGAACCACAGGTGGACGTCAGTCTAGGTGCTTCTGGTCCTGCCCTAGTT 2534
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2376 ATTGATGAACCTGAACCACAGGTGGACGTCAGTCTAGGTGCTTCTGGTCCTGCCCTAGTT 2435
Query 2535 GGAGAAGATTTTGCGATGCCAATCGTGGTAACTTCAAAGGGTCATGCCGTATACAGTGGT 2594
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2436 GGAGAAGATTTTACGATGCCTATCGTGGTAACTTCAAAGGGTCATGCCGTATACAGTGGT 2495
Query 2595 GAATTGAAGATTAATCTAGTTGATGTGGGTGGTGGTGGTTTGTTTAGCCCAAGAGAAGCA 2654
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 2496 GAATTGAAGATTAATCTAGTTGATGTGGGTGGTGGGGGTTTGTTTAGCCCTAGAGAAGCA 2555
Query 2655 GAACCGTTTTCTCTAGAAAGCCATCATGTTGAAATCTGTGGTATTGATGGGGCAGAGGGC 2714
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2556 GAACCGTTTTCTCTAGAAAGCCATCATGTTGAAATCTGTGGTATTGATGGGGCAGAGGGA 2615
Query 2715 AACAATGAATCCGAGTCTGAAACAGGGAGCATAAAGAAAATTCAGCAATCTTTTGGGCTG 2774
||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2616 AACGATGAGTCCGAGTCTGAAACAGGGGGCATAAAGAAAATTCAGCAATCTTTTGGGCTG 2675
Query 2775 GTTTCTGTTCCATACCTGAAGGAAGGAGAATCATGGTCGTGCAAACTGGAAATCAAGTGG 2834
|||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 2676 GTTTCTGTTCCAGACCTGAAGGAAGGAGAATCATGGTCGTGCAAACTAGAAATAAAGTGG 2735
Query 2835 CATAGACCCAAGCCTGTGATGCTTTTTGTGTCATTGGGTTACTTGCCACATGGCAGTGAA 2894
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2736 CATAGACCCAAGCCTGTCATGCTTTTTGTGTCATTGGGTTACTTGCCACATGGCAGTGAA 2795
Query 2895 GCCAATACCCAAAAAGTTCACATACACAAGAGCTTGCAGATTGAAGGGAAGATGCCTCTT 2954
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2796 GCCAATACCCAAAAACTTCACATACACAAGAGCTTGCAGATCGAAGGGAAGATGCCTCTT 2855
Query 2955 TTAATAAGCAATCGTTTTATGTTGCCATATAGAAGGGATCACCTATTGCTCAATAGGATA 3014
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2856 TTAATAAGCAATCGGTTTATGTTGCCATATAGAAGGGATCACCTATTGCTCAATAGGATC 2915
Query 3015 AAGCCAGCCCCTGATTCTGAAGACGTGTCTTCTCTGCCGCTGAACGAAAAAAGTGTGTTA 3074
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 2916 AAGCCAGCCCCTGATTCTGAAGACATGTCTTCTCTGCCTCTGAACGAAAAAAGTGTGTTA 2975
Query 3075 GTTGTCAGTGCCAAAAATTGCTCAGAAATAGCGCTGAAACTGGTGTCCATGTCCATTGAA 3134
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 2976 GTTGTCAGTGCCAAAAATTGCTCAGAAATAGCACTGGAACTGGTGTCCATGTCCATTGAA 3035
Query 3135 TTTGATGATGAACAAGGGGAAACTTCATGTTTGATTCAGCAGGGTGGTGGGTGTGGAGAC 3194
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 3036 TTTGATGATGAACTAGGGGAAACTTCATGTTTGATTCAGCAGGGTAGTGGGTGTGGAGAT 3095
Query 3195 TCCCCAAGCTCTGCAAATCTTGCGCCAGGGGAAGAGTTCAAAAAGGTTTTCACAGTCATA 3254
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3096 TCCCCAAGCTCTGCTAATCTTGCGCCAGGGGAAGAGTTCAAAAAGGTTTTCACAGTCATA 3155
Query 3255 CCAACGACGAGAACTCCAAAGCTTGGTTTGGGATCAATACATTTAAAATGGAGGAGAGAG 3314
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 3156 CCAACGACGAGAACTCCAAAGCTTGGTTTGGGATCAGTACATTTAAAATGGAGGAGACAG 3215
Query 3315 GGAGGTAACATAACAGAGGCATATGTTTCAACAAAGCACAAACTTCCTGAAGTAAATGTG 3374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3216 GGAGGTAACATAACAGAGGCATATGTTTCAACAAAGCACAAACTTCCTGAAGTAAATGTG 3275
Query 3375 GAGGCATCACCACTGGTAATGAGTTTGGACTCTCCTCCATATGCCATTCTTGGAGAACCC 3434
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3276 GAGGCATCACCACTGGTAATGAGTTTGAACTCTCCTCCATATGCCATTCTTGGAGAACCC 3335
Query 3435 TTCACTTACGCTGTTAGAATCTGCAACCAGACACAGTTGCTGCAAGAAGCAAAGTTTGGT 3494
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3336 TTCACTTACGCCGTTAGAATCTGCAACCAGACACAGTTGCTGCAAGAAGCAAAGTTTGCT 3395
Query 3495 CTGGCTGATGCACAGAGTTTTGTCCTGTCTGGGTCTCACAGCAATACGGTTTCAGTCCTT 3554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3396 CTGGCTGATGCACAGAGTTTTGTCCTGTCTGGGTCTCACAGCAATACGGTTTCAGTCCTT 3455
Query 3555 CCCAAGTCAGAACACGTCTTAAGTTATAAGCTAGTGCCTCTGACTTGCGGTGAACAGCAA 3614
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3456 CCCAAGTCAGAACACGTCTTAAGTTATAAGCTAGTGCCTCTGACTTGTGGTGAACAGCAA 3515
Query 3615 CTCCCAAAGATAACTTTGACATCAGCGCGATATGCTGCTGAGTTTCAGCCATCTGCGGTT 3674
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 3516 CTCCCAAAGATAACTGTGACATCAGCGCGATATTCTGCTGAGTTTCAGCCATCTGCGGTT 3575
Query 3675 GCTTCAAGTGTCTTTGTGTTTCCCTCAGCCCCACAAGCCGAGAAAGCCATCTCTACCAGC 3734
|||||||||||||||||||||||||||| ||||||||||||||| || | |||||||| |
Sbjct 3576 GCTTCAAGTGTCTTTGTGTTTCCCTCAGTCCCACAAGCCGAGAACGCTAACTCTACCA-C 3634
Query 3735 AA-GTAGTGTAACTTCGCATGACTTGGGTTTTCAGATGT---CTATGCAGTTTCAGCCAT 3790
|| ||||||||||||| | |||||||||||||| ||||| ||||||||||||||||||
Sbjct 3635 AAAGTAGTGTAACTTCACGTGACTTGGGTTTTCGGATGTTGTCTATGCAGTTTCAGCCAT 3694
Query 3791 ATGTGG-TTAAG-ACAGACATATTGAATCAGTTTGGTAAATTTTGATCCTGAAGTGTCG- 3847
|||||| ||||| | ||||||| |||||||||||||||||||||| |||||||||| |
Sbjct 3695 ATGTGGGTTAAGTA-AGACATACTGAATCAGTTTGGTAAATTTTGGCCCTGAAGTGT-GT 3752
Query 3848 CCT--ATGTTGTATTTTCAT-TTTT----CCTTCTGTTGTTGATAATAATGGATATTTTT 3900
||| ||||||||||||| | |||| |||| |||||||||||||||||| |||||||
Sbjct 3753 CCTCTATGTTGTATTTTCTTCTTTTTTTTCCTTATGTTGTTGATAATAATGGCTATTTTT 3812
Query 3901 TGGAGAACCCAAACTAGACACATAGGATTAGGACACAATCTGTTTTGAGATGTGTTTTGT 3960
| ||||| || ||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 3813 -GAAGAACACATACTAGACACATAGGATTAGGAGACAATCTGTTTTGAGATATGTTT-GT 3870
Query 3961 GGCAACTGTTTTTCTTTCAATGCAAAAAGTGTGTGTG 3997
|||||||||||||||||||||||||||||||||||||
Sbjct 3871 GGCAACTGTTTTTCTTTCAATGCAAAAAGTGTGTGTG 3907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 151240795102
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5