BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65960.1
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951652 jgi|Araly1|951652|scaffold_803539.1 1975 0.0
> Ahg951652 jgi|Araly1|951652|scaffold_803539.1
Length=1227
Score = 1975 bits (1069), Expect = 0.0
Identities = 1178/1230 (96%), Gaps = 9/1230 (1%)
Strand=Plus/Plus
Query 46 GGCGAAGTTGGAGAAGATTGATGGAAAGCCGACCGGGAGTTTTGGTCGTCGGATCCTCTG 105
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 GGCGAAGTTGGAGGAGATTGATGGAAAGCCGGCCGGGAGTTTTGGTCGTCGGATCCTCTG 60
Query 106 GCGTCGGCAAGCGCACCCTCCTCTCTCGATTGCTCTCTGTGGAATTTGAGGATTCATCGG 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCGTCGGCAAGCGCACCCTCCTCTCTCGATTGCTCTCTGTGGAATTTGAGGATTCATCGG 120
Query 166 AGTCATCATCTCAAACAGAAGTTCATGGCTGGACGATTAACACTAAGTATTACACTGCGG 225
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGTCACCATCGCAAACAGAAGTTCATGGCTGGACGATTAACACTAAGTATTACACTGCGG 180
Query 226 ATGTTTCTGTATGTATATCACATATTTGCGATGAATACTCTCTACCCAATCTCCCTAACT 285
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 181 ATGTTTCTGTATGTATATCACATATTTGCGATGACTACTCTCTACCCAATCTCCCTCACT 240
Query 286 CACATCCACTGGTGGCGTTAGTTATGGTCTTCGACTTGAGTGAGCTGTCAACCCTTGTTG 345
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 CACATCCACTGGTGGCGTTAGTTATGGTCTTCGACTTGAGTGAGCTGTCAACTCTTGTTG 300
Query 346 CTCTTCAAGACTGGGTTTCTCATACTGACATCAACAGTTTTGATATATTGTTGTGCATTG 405
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 301 CTCTTCAAGACTGGGTTTCTCATACCGACATCAACAATTTTGATATATTGTTGTGCATTG 360
Query 406 GTAACAAAGTAGATCGTGTCCCTCATCACCTTGCTCATGATGAATATAGACGGCGCCTTT 465
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 361 GTAACAAAGTAGATCGTGTCCCTCATCACCTAGCTCATGATGAATATAGACGACGCCTTT 420
Query 466 TGAAGGCATCAGACCCCTCTAGAGA-TCTGTATTCGGACATTGATGACTTTGGGATCTCC 524
|||||||| |||||||||||||| | | ||||||| ||||||||||||||||||||||||
Sbjct 421 TGAAGGCAACAGACCCCTCTAGA-ATTATGTATTCAGACATTGATGACTTTGGGATCTCC 479
Query 525 GAAACTGAAGGAAGCAGCTTGTTGGGAAGTGAAGATGCATCACTAGATATCAGGGGAGCA 584
|||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 480 GAAACTGAAGGAAGCAGCTTGTTGGGAAGTCAAGATACATCACTGGATATCAGGGGAGCA 539
Query 585 TGTCTTGAGTGGTGCTCTGAGAATAACATTGAGTTCATTGAGGCTTGTGCCTCTAATCCT 644
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 TGTCTTGAGTGGTGCTCTGAGAATAACATCGAGTTCATTGAGGCTTGTGCCTCTAATCCT 599
Query 645 GATTTTGACAAGTGTTTATCAGTCGATGGGGATTCTCAAGGGGTTGAACGTCTATTTGGT 704
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 600 GATTTTGACAAGTGTTTGTCAGTCGATGGGGATTCTCAAGGGGTTGAACGCCTATTTGGT 659
Query 705 GCTCTTTCGGCTCATATGTGGCCTGGGATGATTCTGAAATCTGGTGATAGGATAAATGAA 764
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 660 GCTCTTTCGGCTCATATGTGGCCTGGGATGATTCTGAAATCGGGTGATAAGATAAATGAT 719
Query 765 CCTGTGTTACCTCAAGGGGAAGAGTTGTCAGAAGAAGAATCTGAATATGAATTGGAGTAT 824
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CCGGTGTTAGCTCAAGGGGAAGAGTTGTCAGAAGAAGAATCTGAATATGAATTGGAGTAT 779
Query 825 GAAGTGCTATCAGCAGGCTCAGGTGATCCATGGGATAATATTGAAGAAAGATGGGTTTCT 884
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 780 GAAGTGCTATCAGCAGGCTCAGGTGATCCATGGGAAAATATGGACGAAAGATGGGTTTCT 839
Query 885 GCAAGTGAAACGCATTCACATGCCGATGCTGGCGGATCCACTTCACAGGAAAACCTCCAT 944
|||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 840 GCAAGTGAAACGCATTCACATGGAGATGCTGGCGGTTCCACGTCACAGGAAAACCTCCAT 899
Query 945 GTAGAAAATAGTATGGTGAAACCGAATAAAG-T-T-GATGAAGAGCTGCTGCCGTCAGGG 1001
|||||||||| |||||||||| ||||||||| | | ||||||||||||| ||||||||||
Sbjct 900 GTAGAAAATAATATGGTGAAATCGAATAAAGTTGTGGATGAAGAGCTGCGGCCGTCAGGG 959
Query 1002 TCA-AGGTTAGAGCTGCAAAATGACACTGACAGAGCAATAGTAACAGATGAAAAACCTTT 1060
||| | |||||||| |||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 960 TCACA-GTTAGAGCCGCAAAATGACACTGACAGAGCAATAGTAACAGATGAAAGATCTTT 1018
Query 1061 GGGCACAGAAAATGAAAAATGTTACGAGTTTGAAGATGTGGAACAGTTGATGTCAGAAAT 1120
|| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1019 GGACACAGAAAATGAAAAATGTTATGAGTTTGAAGACGTGGAACAGTTGATGTCAGAAAT 1078
Query 1121 AGGAAACATCCGGGACAACTTGCGATTGATGCCTGATTTCCAGAGGAGGGAAATAGCTGC 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AGGAAACATCCGGGACAACTTGCGATTGATGCCTGATTTCCAGAGGAGGGAAATAGCTGC 1138
Query 1181 AAATTTAGCGATGAAAATGGCTTCCATGTTTGGAGGTGACACTGATGACGAGGAAGAACC 1240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1139 AAATTTAGCGATGAAAATGGCTTCCATGTTTGGAGGTGACAGTGATGACGAGGAAGAACC 1198
Query 1241 TGAGTGAGTCTGTTTATATCAGAT-ATTGT 1269
||||||||| ||||||||||| || |||||
Sbjct 1199 TGAGTGAGTGTGTTTATATCA-ATTATTGT 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56030750395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5