BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66000.1
Length=922
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497021 jgi|Araly1|497021|fgenesh2_kg.8__2837__AT5G66000.1 989 0.0
> Ahg497021 jgi|Araly1|497021|fgenesh2_kg.8__2837__AT5G66000.1
Length=826
Score = 989 bits (535), Expect = 0.0
Identities = 754/854 (88%), Gaps = 37/854 (4%)
Strand=Plus/Plus
Query 78 TTCAGAATTTCGACCTCCAAAACCCTAATTTTGGCGG---ACT--TCTCTTATCTCTTTT 132
||||||||||| ||||||||||||||||||||||||| || |||||||||||| |
Sbjct 1 TTCAGAATTTCAACCTCCAAAACCCTAATTTTGGCGGTCTTCTCCTCTCTTATCTCTCTC 60
Query 133 CGCAGGCGCATTCAAGGTTAGA---GAGATTTGTTGTATGTGTAATTATGGAAGGCGTCA 189
||||||||||||||||| || | ||| | |||||||||| |||||||||||| ||
Sbjct 61 CGCAGGCGCATTCAAGG-TAAACTCTAGA-GT-TTGTATGTGTTATTATGGAAGGCCCCA 117
Query 190 ATGTGCTGACAAAAGAGGTTGATGCTAATGGAGTTCCACATCCTTCCACCAATGTTGATT 249
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 118 ATGTGCTGACAAAAGAGGTTGATGATAATGGAGTTCCACATCCTTCCACCAGTGTTGATT 177
Query 250 ACCATCTTAGCATTCTTTTAGCTTCTCATTTGAGTAATCCAGATCTCACCCCTCAGGAGA 309
||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| |||
Sbjct 178 ACCATCTTAGCTTTCTTTTAGCTTCGCATTTGAGTAACCCAGATCTCACCCCTCAGCAGA 237
Query 310 TTGCAGATGCTTCGAGATGTACTGCTGCCGCTGCTGCTATTGCTGCTAAGGCCGCCAGAG 369
||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 238 TTGCAGAGGCTTCAAGATGTACTGCTGCCGCTGCTTCTATTGCTGCTAAGGCCGCCAGAG 297
Query 370 CTACTGCAGATGAGAAAGCCGCTGCTGCAGCAAAAGCCGTTGCTGCTGCTAAGACCGCTT 429
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 298 CTACTGCAGATGAGAAAGCCGCTGCTGCAGCAAAAGCTGTTGCTGCTGCTAAGTCCGCTT 357
Query 430 TAGATTTGATTGCCTCCTTTCCTCCTAACCAGGGACTCGTACAAGACGCATGTCTCCACA 489
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 358 TAGATTTGATTGCTTCCTTTCCTCCTAACCAGGGACTCGTCCAAGACGCATGTCTCGACA 417
Query 490 AGGACAAGAAGATGAAGAAGAAGCATGTTGCTGCTGACTTGTTGTTTTCCAAGGATGATG 549
||||||| | || ||| || | ||||||||||||||| | | | | ||||
Sbjct 418 AGGACAACATGACGAA-AA-A-GCATGTTGCTGCTGA---G--GAT------G-ATGA-- 460
Query 550 CATTACCCTCCAAGTTGCAACTTGGAGGCGTCGTCAGTCAGGGCATAGTTTCAAACTCTT 609
|||||| |||||||||| ||| |||| |||| |||||||||||| ||||||||||||
Sbjct 461 -ATTACCTTCCAAGTTGCTACTAGGAGACGTC---AGTCAGGGCATAATTTCAAACTCTT 516
Query 610 CTTCGAGTTGTCAACATAAGAACGACGACCAGTGTGCGGTTCCCACATGCTCAAGAGAGA 669
|||| ||||| ||||||||||||||| | |||| | | |||||| | ||||||||||||
Sbjct 517 CTTCCAGTTGCCAACATAAGAACGAC--C-AGTGCGTGCTTCCCATAGGCTCAAGAGAGA 573
Query 670 GGCTGAATACAGAGCATGCCGTTTCCAAGAGGGTGGAATTCGATGGCCTTGGCATGGAGT 729
||||||||||||||| |||| |||||||||||| ||| |||||||||||| |||||||||
Sbjct 574 GGCTGAATACAGAGCCTGCCATTTCCAAGAGGGCGGATTTCGATGGCCTTAGCATGGAGT 633
Query 730 TAGATACCGATAGACTGAACGAATCTGTTAATGGAGAAGGAGCAAAAGAAGAGATTCAGG 789
||||||||||||||||||||||||| || |||||||||||||||||||| | ||||||
Sbjct 634 TAGATACCGATAGACTGAACGAATCAGTCGGTGGAGAAGGAGCAAAAGAAGGGGTTCAGG 693
Query 790 TGACTAGAAAAAGAGGGAGGCCAAAGTCCAAATGATTTGGCTTCTGCAGTTTTGATTTAG 849
|||| || ||||| ||||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct 694 TGACCAGGAAAAGGGGGAGGCCAAAGTCCAAATGATTTGGCGTCTGCAATTTTGGTTTAG 753
Query 850 TCTCTTTGTTG-CGAATAGCCGCAAATGGTGTTTATCAAACTTGATTCTAAGAGTATTTT 908
||| || |||| | || ||||||||||||||||||||| ||||||||||||| | |||||
Sbjct 754 TCTATTGGTTGTC-AACAGCCGCAAATGGTGTTTATCACACTTGATTCTAAGCGCATTTT 812
Query 909 TCTTATTGGTTTTC 922
||||||||||||||
Sbjct 813 TCTTATTGGTTTTC 826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34196256549
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5