BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G66000.1 Length=922 Score E Sequences producing significant alignments: (Bits) Value Ahg497021 jgi|Araly1|497021|fgenesh2_kg.8__2837__AT5G66000.1 989 0.0 > Ahg497021 jgi|Araly1|497021|fgenesh2_kg.8__2837__AT5G66000.1 Length=826 Score = 989 bits (535), Expect = 0.0 Identities = 754/854 (88%), Gaps = 37/854 (4%) Strand=Plus/Plus Query 78 TTCAGAATTTCGACCTCCAAAACCCTAATTTTGGCGG---ACT--TCTCTTATCTCTTTT 132 ||||||||||| ||||||||||||||||||||||||| || |||||||||||| | Sbjct 1 TTCAGAATTTCAACCTCCAAAACCCTAATTTTGGCGGTCTTCTCCTCTCTTATCTCTCTC 60 Query 133 CGCAGGCGCATTCAAGGTTAGA---GAGATTTGTTGTATGTGTAATTATGGAAGGCGTCA 189 ||||||||||||||||| || | ||| | |||||||||| |||||||||||| || Sbjct 61 CGCAGGCGCATTCAAGG-TAAACTCTAGA-GT-TTGTATGTGTTATTATGGAAGGCCCCA 117 Query 190 ATGTGCTGACAAAAGAGGTTGATGCTAATGGAGTTCCACATCCTTCCACCAATGTTGATT 249 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 118 ATGTGCTGACAAAAGAGGTTGATGATAATGGAGTTCCACATCCTTCCACCAGTGTTGATT 177 Query 250 ACCATCTTAGCATTCTTTTAGCTTCTCATTTGAGTAATCCAGATCTCACCCCTCAGGAGA 309 ||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| ||| Sbjct 178 ACCATCTTAGCTTTCTTTTAGCTTCGCATTTGAGTAACCCAGATCTCACCCCTCAGCAGA 237 Query 310 TTGCAGATGCTTCGAGATGTACTGCTGCCGCTGCTGCTATTGCTGCTAAGGCCGCCAGAG 369 ||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 238 TTGCAGAGGCTTCAAGATGTACTGCTGCCGCTGCTTCTATTGCTGCTAAGGCCGCCAGAG 297 Query 370 CTACTGCAGATGAGAAAGCCGCTGCTGCAGCAAAAGCCGTTGCTGCTGCTAAGACCGCTT 429 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 298 CTACTGCAGATGAGAAAGCCGCTGCTGCAGCAAAAGCTGTTGCTGCTGCTAAGTCCGCTT 357 Query 430 TAGATTTGATTGCCTCCTTTCCTCCTAACCAGGGACTCGTACAAGACGCATGTCTCCACA 489 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct 358 TAGATTTGATTGCTTCCTTTCCTCCTAACCAGGGACTCGTCCAAGACGCATGTCTCGACA 417 Query 490 AGGACAAGAAGATGAAGAAGAAGCATGTTGCTGCTGACTTGTTGTTTTCCAAGGATGATG 549 ||||||| | || ||| || | ||||||||||||||| | | | | |||| Sbjct 418 AGGACAACATGACGAA-AA-A-GCATGTTGCTGCTGA---G--GAT------G-ATGA-- 460 Query 550 CATTACCCTCCAAGTTGCAACTTGGAGGCGTCGTCAGTCAGGGCATAGTTTCAAACTCTT 609 |||||| |||||||||| ||| |||| |||| |||||||||||| |||||||||||| Sbjct 461 -ATTACCTTCCAAGTTGCTACTAGGAGACGTC---AGTCAGGGCATAATTTCAAACTCTT 516 Query 610 CTTCGAGTTGTCAACATAAGAACGACGACCAGTGTGCGGTTCCCACATGCTCAAGAGAGA 669 |||| ||||| ||||||||||||||| | |||| | | |||||| | |||||||||||| Sbjct 517 CTTCCAGTTGCCAACATAAGAACGAC--C-AGTGCGTGCTTCCCATAGGCTCAAGAGAGA 573 Query 670 GGCTGAATACAGAGCATGCCGTTTCCAAGAGGGTGGAATTCGATGGCCTTGGCATGGAGT 729 ||||||||||||||| |||| |||||||||||| ||| |||||||||||| ||||||||| Sbjct 574 GGCTGAATACAGAGCCTGCCATTTCCAAGAGGGCGGATTTCGATGGCCTTAGCATGGAGT 633 Query 730 TAGATACCGATAGACTGAACGAATCTGTTAATGGAGAAGGAGCAAAAGAAGAGATTCAGG 789 ||||||||||||||||||||||||| || |||||||||||||||||||| | |||||| Sbjct 634 TAGATACCGATAGACTGAACGAATCAGTCGGTGGAGAAGGAGCAAAAGAAGGGGTTCAGG 693 Query 790 TGACTAGAAAAAGAGGGAGGCCAAAGTCCAAATGATTTGGCTTCTGCAGTTTTGATTTAG 849 |||| || ||||| ||||||||||||||||||||||||||| |||||| ||||| ||||| Sbjct 694 TGACCAGGAAAAGGGGGAGGCCAAAGTCCAAATGATTTGGCGTCTGCAATTTTGGTTTAG 753 Query 850 TCTCTTTGTTG-CGAATAGCCGCAAATGGTGTTTATCAAACTTGATTCTAAGAGTATTTT 908 ||| || |||| | || ||||||||||||||||||||| ||||||||||||| | ||||| Sbjct 754 TCTATTGGTTGTC-AACAGCCGCAAATGGTGTTTATCACACTTGATTCTAAGCGCATTTT 812 Query 909 TCTTATTGGTTTTC 922 |||||||||||||| Sbjct 813 TCTTATTGGTTTTC 826 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34196256549 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5