BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66010.1
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951646 jgi|Araly1|951646|scaffold_803533.1 1343 0.0
> Ahg951646 jgi|Araly1|951646|scaffold_803533.1
Length=812
Score = 1343 bits (727), Expect = 0.0
Identities = 781/808 (97%), Gaps = 0/808 (0%)
Strand=Plus/Plus
Query 65 GAAGACCTTGGCGGCAGGTCATGTACGGATCTAGGGGGGCCATGTTTGGGAGCGGGGGGT 124
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 5 GAAGACCTTGGCGGCAGGTCATGTACGGATCTAGAGGGGCCATGTTTGGGAGCGGGGGGT 64
Query 125 ACGAGGTGGGATCAAAGAGACAAAGAATGATGCAATCAAATCCCTACTTGGCAGTTGGCA 184
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 ACGAGGTTGGATCAAAGAGACAAAGAATGATGCAATCAAATCCCTACTTGGCAGTTGGCA 124
Query 185 CTGGACCTACCAGCTTTCCACCTTTTGGCTATGCCGGCGGATTCCCAGTCGTTCGCCTCA 244
| ||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 125 CCGGATCTACCAGCTTTCCACCTTTTGGCTATGCCTGCGGATTCCCTGTCGTTCGCCTCA 184
Query 245 GGGGTCTTCCCTTCAACTGCGCTGACATTGACATCTTCGAGTTCTTTGCGGGCCTCAACA 304
|||||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||
Sbjct 185 GGGGTCTTCCCTTCAACTGCGCTGACATTGACATCTTCAAGTTCTTTTCTGGCCTCGACA 244
Query 305 TTGTCGATGTCCTGCTCGTCAGCAAAAACGGTAAATTCTCTGGGGAGGCCTTTGTGGTGT 364
||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 245 TTGTCGATGTCCTCCTAGTCAGCAAAAACGGTAAATTCTCCGGGGAGGCCTTTGTGGTGT 304
Query 365 TTGCCGGCCCTATGCAAGTCGAGATTGCCTTGCAAAGGGACAGACACAATATGGGGAGGA 424
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 305 TTGCCGGCCCTATGCAAGTCGAGATTTCCTTGCAAAGGGACAGACATAATATGGGGAGGA 364
Query 425 GATACGTGGAAGTTTTCCGGTGCTCTAAGCAGGACTACTACAATGCGGTGGCTGCTGAGG 484
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 365 GATACGTGGAAGTTTTCCGGTGCTCTAAGCAGGATTACTACAATGCGGTTGCTGCTGAGG 424
Query 485 AGGGAGCGTATGAGTATGAGGTACGTGCTAGCCCACCTCCCACCGGGCCATCCAGGGCAA 544
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 425 AGGGAGCGTATGAGTACGAGGTCCGTGCTAGCCCACCTCCCACCGGGCCATCCAGAGCAA 484
Query 545 AGAGGTTTAGTGAGAAAGAGAAGCTTGAGTACACAGAGGTTTTGAAGATGCGAGGCCTCC 604
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 485 AGAGGTTAAGTGAGAAAGAGAAGCTCGAGTACACAGAGGTTTTGAAGATGCGAGGCCTCC 544
Query 605 CTTACTCGGTGAACAAACCTCAAATCATAGAGTTTTTCAGCGGGTACAAGGTTATCCAAG 664
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 545 CTTACTCTGTGAACAAACCTCAAATCATAGAGTTTTTCAGCGGGTACAAGGTTATCGAAG 604
Query 665 GACGGGTACAGGTTGTGTGTCGGCCTGATGGGAAGGCCACGGGAGAGGCATTTGTGGAGT 724
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 605 GACGGGTACAGGTTGTGTGTCGACCTGATGGGAAGGCCACGGGAGAGGCATTTGTGGAGT 664
Query 725 TTGAGACGGGGGAGGAGGCGAGGAGGGCAATGGCTAAGGACAAAATGTCGATTGGGTCAA 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TTGAGACGGGGGAGGAGGCGAGGAGGGCAATGGCTAAGGACAAAATGTCGATTGGGTCAA 724
Query 785 GGTATGTGGAGTTGTTTCCAACTACACGTGAAGAGGCTCGAAGGGCTGAGGCCAGATCTA 844
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 725 GGTATGTGGAGTTGTTTCCAACCACACGTGAAGAGGCTCGAAGGGCTGAGGCCAGGTCTA 784
Query 845 GGCAATGACTCTTTCCTTCACTATGTAT 872
||||||||||||||||||||||||||||
Sbjct 785 GGCAATGACTCTTTCCTTCACTATGTAT 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40905889941
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5