BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G66020.1 Length=1782 Score E Sequences producing significant alignments: (Bits) Value Ahg497020 jgi|Araly1|497020|fgenesh2_kg.8__2836__AT5G66020.1 2804 0.0 Ahg485497 jgi|Araly1|485497|fgenesh2_kg.5__1489__AT3G51460.1 1840 0.0 > Ahg497020 jgi|Araly1|497020|fgenesh2_kg.8__2836__AT5G66020.1 Length=1782 Score = 2804 bits (1518), Expect = 0.0 Identities = 1707/1795 (95%), Gaps = 26/1795 (1%) Strand=Plus/Plus Query 1 ATGGTGAGTAGGCTCAAGATACACTCTGGCTTGCGTTTGTGGGAATTCCCTGATCAGTAC 60 |||| | |||||| |||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 ATGGAGGGTAGGCACAAGTTACACTCTGGCTTGCGTTTATGGGAATTCCCTGATCAGTAC 60 Query 61 GTCATCGAGCCAACCGATGGTTCCTCCGCTTCATGTTTGGATATTAGTCGTCTTGACGGC 120 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 61 GTCATCGAGCCAACCGATGGTTCCTCCGCTTCATGTTTGGACATTAGCCGTCTTGACGGC 120 Query 121 TCCATGAAGCTCATTGATCAAGTAGCAGAATGCAACTCTTTGCGTGTCCCTAAAATCCGC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCCATGAAGCTCATTGATCAAGTAGCAGAATGCAACTCTTTGCGTGTCCCTAAAATCCGC 180 Query 181 TCCATTTTCGGTGTGGTTGGGATGCTGAAGCTCCTGGCAGGATCCTACTTAGTAGTTGTG 240 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCCATTTTCGGTGTGGTCGGGATGCTGAAGCTCCTGGCAGGATCCTACTTAGTAGTTGTG 240 Query 241 ACAGAGAGCGAATCTGTTGGCTCGTTTTTGGGACATCCTATATACAAAATTAATTCGCTC 300 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 241 ACAGAGAGCGAATCTGTTGGCTCGTTTTTGGGACATCCTATATTCAAAATTAATTCGCTC 300 Query 301 AAGTTTCTTCCATGTGATCATTCACTTGAAAACCCGCATGAAGAACAGAAAAAGATGGAG 360 ||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 301 AAGTTTCTTCCTTGTGATCATTCACTTGAAAACTCTCATGAAGAACAGAAAAAGATGGAG 360 Query 361 ACTGATGACTACTCTAGGCTGCTAAGTGTCGCTGAGAGGACAACTGGTCTCTACTTCTCA 420 || ||||| ||||||||||||||| ||||| |||||||||||||| |||||||||||| Sbjct 361 AC---TGACTTCTCTAGGCTGCTAAGCGTCGCAGAGAGGACAACTGGGCTCTACTTCTCA 417 Query 421 TATGAAATTAACTTGACTCTCACTGCACAGCGCTTGCATGATTTGGGTGATGAGTCTAAG 480 |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 418 TATGAAATAAACTTGACTCTCACCGCACAGCGGTTGCATGATTTGGGTGATGAGTCTAAG 477 Query 481 TTGCTTCCTTTGTGGAGACAGGCTGAGCCTAGATTTCTATGGAACAATTATATGTTAGAA 540 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 478 TTGCTTCCTTTGTGGAGACAGGCTGAGCCTAGATTTCTATGGAACAACTATATGTTAGAA 537 Query 541 GTTCTTATCGATAATAAGCTTGATCAGTTCTTGCTTCCTGTAA--TT-C--AA----G-- 589 ||||||||||| ||||||||||||||||||||||||||| || || | || | Sbjct 538 GTTCTTATCGAAAATAAGCTTGATCAGTTCTTGCTTCCTACAATTTTCCTTAACCCTGCA 597 Query 590 GGA-GTTTTCATAGTTTTCAAACAGCCATTGGAAGAGATATCGTTGACATTACTCTGATT 648 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 TCACGTTTTCATAGTTTTCAAACAGCCATTGGAAGAGATATCGTTGACATTACTCTGATT 657 Query 649 GCTAGGAGGTGCTCTAGAAGAAATGGTACACGCATGTGGCGACGAGGAGCTGACCCTGAT 708 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 658 GCTAGGAGATGCTCTAGAAGAAATGGTACGCGCATGTGGCGACGAGGAGCTGACCCTGAT 717 Query 709 GGTTATGTTGCTAATTTTGTGGAGACTGAGCAAATTGTACGCATGAACGGATACACATCA 768 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 718 GGTTATGTTGCTAATTTTGTGGAGACTGAGCAAATTGTGCGCATGAACGGATACACATCA 777 Query 769 TCCTTTGTTCAGATTAGAGGATCCATGCCTTTTATGTGGGAGCAAATTGTAGATCTGACC 828 || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 TCATTTGTTCAGGTTAGAGGATCCATGCCTTTTATGTGGGAGCAAATTGTAGATCTGACC 837 Query 829 TACAAGCCCAAGTTTGAGATTGTCCAACCTGAAGAAGCTGCGAGGATAGCTGAGCGTCAC 888 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 838 TACAAGCCCAAGTTTGAGATTGTCCAACCTGAAGAAGCTGTGAGGATAGCTGAGCGTCAC 897 Query 889 TTTCTCGACTTAAGGAAAAAATATGGATCAGTTTTGGCGGTTGATCTTGTCAATAAGCAT 948 ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 TTTCTCGGCGTAAGGAAAAAATATGGATCAGTTTTGGCGGTTGATCTTGTCAATAAGCAT 957 Query 949 GGAGGTGAAGGGCGCCTAAGTGAGAGGTTTGCAGGTGCTATGCAGCACATCACTGGTGAT 1008 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 958 GGAGGTGAGGGGCGCCTAAGTGAAAGGTTTGCAGGTGCTATGCAGCACATCACTGGTGAT 1017 Query 1009 GATGTAAGATACCTGCACTTTGATTTCCATCACATCTGTGGCCATATTCACTTTGAGCGC 1068 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1018 GATGTAAGATACCTGCACTTTGATTTCCATCACATATGTGGCCATATTCACTTTGAGCGC 1077 Query 1069 TTAGCAATTCTGTATGAGCAGATGGAGGATTTCCTCGAGAAAAACGGGTACTTTTTGTTG 1128 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 TTAGCAATTTTGTATGAGCAGATGGAGGATTTCCTCGAGAAAAACGGGTACTTTTTGTTT 1137 Query 1129 AATGAAAAGGGTGAGAAAATGAAGGAGCAGCTTGGTATTGTGCGAACCAACTGCATAGAT 1188 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1138 AATGAAAAGGGTGAGAAAATGAAGGAGCAGCTTGGTATTGTGCGAACAAACTGCATAGAT 1197 Query 1189 TGCTTAGACCGTACTAATGTCACCCAGAGTATGATAGGCCGAAAGC-TGTTGGAACTTCA 1247 |||||||||||||||||| | | | | |||||||||||| | |||||||| |||| Sbjct 1198 TGCTTAGACCGTACTAAT---AGC-A---T--GATAGGCCGAAA-CATGTTGGAATTTCA 1247 Query 1248 ACTCAAAAGGATTGGTGTTTTTGGTGCCGAAGAGACCATACGCTCGCATCAAAACTTTGA 1307 |||||||||||||||||||||||||||||||||| | ||| |||||||| |||| ||||| Sbjct 1248 ACTCAAAAGGATTGGTGTTTTTGGTGCCGAAGAGGCTATAAGCTCGCATAAAAATTTTGA 1307 Query 1308 CGAATGCTATAAGATATTGTGGGCTAATCACGGTGATGACATTAGCATTCAGTACTCCGG 1367 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1308 TGAATGCTATAAGATATTGTGGGCTAATCACGGTGATGACATTAGCATTCAATACTCCGG 1367 Query 1368 CACTCCTGCACTTAAAGGAGATTTTGTCAGGTATGGTCAAAGGACTATCCAAGGAGTCCT 1427 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1368 CACTCCTGCACTTAAAGGAGATTTTGTCAGGTATGGTCAAAGGACTGTCCAAGGAGTCCT 1427 Query 1428 TCAAGATGGCTGGAATGCCCTCGCACGCTACTACCTGAACAATTTTGCTGATGGAACTAA 1487 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1428 TCAAGATGGCTGGAATGCCCTCGCACGCTACTATCTGAACAATTTTGCTGATGGAACTAA 1487 Query 1488 GCAGGATGCAATTGATCTTGTGCAAGGACACTATATAGTTGCTGTGAGCCGAGACATGGC 1547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1488 GCAGGATGCAATTGATCTTGTGCAAGGACACTATATAGTTGCTGTGAGCCGAGACATGGC 1547 Query 1548 TCCTGTGCCTCGAAAGCGAGGTCTTGAGGCTGTAGCTAACTTTCCAGTGGCTTTGACGGT 1607 |||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||| Sbjct 1548 TCCTGTGCCTCGAAAGGGAGGTCTTGAGGCTGTAGCTAACTTTCCGGTGGCTTTGATGGT 1607 Query 1608 GATTCTGATCAGTTTCTGGTTTGCAACAATGTCTGTGAAACAAGTTGGGAGTGGTTATAA 1667 |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 1608 GATTCTGATCAGTTTCTGGTTTGCAACAATGTCTGTCAAACAAGTTGGGAGTAGTTATAA 1667 Query 1668 GCACTTGCTTTTCTCACTGGTTTGGGCGGGCATCAGTGTAGCTGTCGCGGCACTCGTGAG 1727 |||||| |||||||| | ||||||||||||||||||||||||||||| ||||||||||| Sbjct 1668 GCACTTATTTTTCTCATTTGTTTGGGCGGGCATCAGTGTAGCTGTCGCAGCACTCGTGAG 1727 Query 1728 GGCCAATGGCCGTATCTTCTGCAACCGGCCTAGTCTGCACAAGCCCAGATCTTGA 1782 |||||||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 1728 GGCCAATGGCCGGATCTTCTGCAACCGGCCTTGTCTGCACAAGCCCAGATCTTGA 1782 > Ahg485497 jgi|Araly1|485497|fgenesh2_kg.5__1489__AT3G51460.1 Length=2162 Score = 1840 bits (996), Expect = 0.0 Identities = 1523/1774 (86%), Gaps = 50/1774 (3%) Strand=Plus/Plus Query 34 CGTTTGTGGGAATTCCCTGATCAGTACGTCATCGAGCCAACCGATGGTTCCTCCGCTTCA 93 ||||| ||||||||||| ||||||||| ||||||||||| | |||||||| ||||||| Sbjct 189 CGTTTATGGGAATTCCCCGATCAGTACATCATCGAGCCAGCTGATGGTTCAGGCGCTTCA 248 Query 94 TGTTTGGATATTAGTCGTCTTGACGGC-TCCATGAAGCTCATTGATCAAGTAGCAGAATG 152 |||||||||||||||||| |||| || |||||||||||||| ||||| || ||||| | Sbjct 249 TGTTTGGATATTAGTCGTGTTGA-TGCTTCCATGAAGCTCATCGATCATGTCCCAGAAAG 307 Query 153 CAACTCTTTGCGTGTCCCTAAAATCCGCTCCATTTTCGGTGTGGTTGGGATGCTGAAGCT 212 ||| || |||| |||||||||||||| |||||||| ||||||||||||||| ||||||| Sbjct 308 CAATTCCGTGCGAGTCCCTAAAATCCGTTCCATTTTTGGTGTGGTTGGGATGTTGAAGCT 367 Query 213 CCTGGCAGGATCCTACTTAGTAGTTGTGACAGAGAGCGAATC-TGTTGGCTCGTTTTTGG 271 ||| |||||||| ||||| || ||||| || ||||| ||| | |||||| |||||| ||| Sbjct 368 CCTTGCAGGATCATACTTGGTGGTTGTAACCGAGAGTGAA-CGTGTTGGATCGTTTCTGG 426 Query 272 GACATCCTATATACAAAATTA-ATTCGCTCAAGTTTCTTCCATGTGATCATTCACTTGAA 330 | |||||||||| |||||||| | |||| ||| ||||||| ||||||||||||||| || Sbjct 427 GCCATCCTATATTCAAAATTACA-ACGCTTAAGGTTCTTCCTTGTGATCATTCACTTCAA 485 Query 331 AACCCGCATGAAGAACAGAAAAAGATGGAGACTGATGACTACTCTAGGCTGCTAAGTGTC 390 ||| | | ||||||||||||||||||||||||||| | | ||| | |||||| |||||| Sbjct 486 AACTCACCTGAAGAACAGAAAAAGATGGAGACTGA-G--TTCTCCAAGCTGCTGAGTGTC 542 Query 391 GCTGAGAGGACAACTGGTCTCTACTTCTCATATGAAATTAACTTGACTCTCA-CTGCACA 449 || || | ||||||||||||||| |||||||||||| ||||||| || || | || |||| Sbjct 543 GCAGAAAAGACAACTGGTCTCTATTTCTCATATGAAGTTAACTTAACACTGAGCT-CACA 601 Query 450 GCGCTTGCATGATTTGGGTGATGAGTCTAAGTTGCTTCCTTTGTGGAGACAGGCTGAGCC 509 || |||||||||||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 602 ACGGTTGCATGATTTGGGTGATGAGTCTAAGTCACTTCCTCTGTGGAGACAGGCTGAGCC 661 Query 510 TAGATTTCTATGGAACAATTATATGTTAGAAGTTCTTATCGATAATAAGCTTGATCAGTT 569 || ||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct 662 GAGGTTTCTTTGGAACAATTACATGTTGGAAGTTCTAATCGATAATAAGCTTGATCAGTT 721 Query 570 CTTGCTTCCTGTAATTCAAGGG---A--GTTT-TCAT-AG-T-TTTCAAACAGCCATTGG 620 ||||||||| |||||||||||| | ||| | || || | ||| ||||||||||||| Sbjct 722 CTTGCTTCCAGTAATTCAAGGGAATATCCTTTGTTATCAGTTCTTTGAAACAGCCATTGG 781 Query 621 AAGAGATATCGTTGACATTACTCTGATTGCTAGGAGGTGCTCTAGAAGAAATGGTACACG 680 ||||||||| |||||||||||||||||||||||||| ||| |||| ||||| |||||||| Sbjct 782 AAGAGATATTGTTGACATTACTCTGATTGCTAGGAGATGCACTAGGAGAAACGGTACACG 841 Query 681 CATGTGGCGACGAGGAGCTGACCCTGATGGTTATGTTGCTAATTTTGTGGAGACTGAGCA 740 ||||||||| |||||||||| | |||||| ||||||||||||||||||||||||||||| Sbjct 842 TATGTGGCGAAGAGGAGCTGATCTTGATGGCTATGTTGCTAATTTTGTGGAGACTGAGCA 901 Query 741 AATTGTACGCATGAACGGATACACATCATCCTTTGTTCAGATTAGAGGATCCATGCCTTT 800 |||||||| ||||| ||||| | ||||| ||||| ||| | || |||||||| ||||| Sbjct 902 AATTGTACAAATGAATGGATATTCTTCATCATTTGTGCAGGTCAGGGGATCCATACCTTT 961 Query 801 TATGTGGGAGCAAATTGTAGATCTGACCTACAAGCCCAAGTTTGAGATTGTCCAACCTGA 860 ||||||||||||| |||||||||| || ||||| ||||||||||| |||||||||||||| Sbjct 962 TATGTGGGAGCAAGTTGTAGATCTAACTTACAAACCCAAGTTTGAAATTGTCCAACCTGA 1021 Query 861 AGAAGCTGCGA-GGATAGCTGAGCGTCACTTTCTCGAC-TTAAGGAAAAAATATGGATCA 918 ||||||| | | |||||||||||||||||||| | ||| ||| ||||||||||||||||| Sbjct 1022 AGAAGCTAC-ACGGATAGCTGAGCGTCACTTTTTGGACCTTA-GGAAAAAATATGGATCA 1079 Query 919 GTTTTGGCGGTTGATCTTGTCAATAAGCATGGAGGTGAAGGGCGCCTAAGTGAGAGGTTT 978 |||||||| ||||| ||||| ||||||||||| ||||| |||||| |||| |||| || | Sbjct 1080 GTTTTGGCAGTTGACCTTGTTAATAAGCATGGCGGTGAGGGGCGCTTAAGCGAGAAGTAT 1139 Query 979 GC-AGGTGCTATGCAGCACATCACTGGTGATGATGTAAGATACCTGCACTTTGATTTCCA 1037 || | || |||||| ||||| |||| |||||| |||||||||||||||| |||||||| Sbjct 1140 GCTAC-TGTTATGCAACACATTGCTGGGGATGATATAAGATACCTGCACTTCGATTTCCA 1198 Query 1038 TCACA-TCTGTGGCCATATTCACTTTGAGCGCTTAGCAATTCTGTATGAGCAGATGGAGG 1096 ||| | | ||||| |||||||| |||||||||||| ||||||| || |||||||| |||| Sbjct 1199 TCA-AGTTTGTGGGCATATTCATTTTGAGCGCTTATCAATTCTTTACGAGCAGATCGAGG 1257 Query 1097 A-TTTCCTCGAGAAAAACGGGTACTTTTTGTTGAATGAAAAGGGTGAGAAAATGAAGGAG 1155 |||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 1258 GGTTTC-TCGAAAAAAATGGGTACTTTCTGTTGAATGAAAAGGGTGAGAAAATGAAGGAC 1316 Query 1156 CAGCTTGGTATTGTGCGAACCAACTGCATAGATTGCTTAGACCGTACTAATGTCACCCAG 1215 ||||||||| |||| ||| | |||||||||||||||||||||||||| |||||||||||| Sbjct 1317 CAGCTTGGTGTTGTCCGATCAAACTGCATAGATTGCTTAGACCGTACAAATGTCACCCAG 1376 Query 1216 AGTATGATAGGCCGAAAGCTGTTGGAACTTCAACTCAAAAGGATTGGTGTTTTTGGTGCC 1275 || |||||||| ||||| |||| ||||||||||||||||||||||| |||||||| || Sbjct 1377 AGCATGATAGGTCGAAAAATGTTAGAACTTCAACTCAAAAGGATTGGAGTTTTTGGCGCT 1436 Query 1276 GAAGAGACCATACGCTCGCATCAAAACTTTGACGAATGCTATAAGATATTGTGGGCTAAT 1335 ||||| |||||| |||| |||| || ||||||||| |||||| ||||| ||||||||| Sbjct 1437 GAAGAAACCATAAGCTCACATCTGAATTTTGACGAACACTATAAAATATTATGGGCTAAT 1496 Query 1336 CACGGTGATGACATTAGCATTCAGTACTCCGGCACTCCTGCACTTAAAGGAGATTTTGTC 1395 || |||||||| || |||||||||||||| || ||||||||||||||||||||||| || Sbjct 1497 CATGGTGATGAAATCAGCATTCAGTACTCTGGTACTCCTGCACTTAAAGGAGATTTCGTT 1556 Query 1396 AGGTATGGTCAAAGGACTATCCAAGGAGTCCTTCAAGATGGCTGGAA-TGCCCTC-GCAC 1453 |||||||| || ||||| ||| || |||||| ||||||| |||| | ||||| | || Sbjct 1557 AGGTATGGGCATCGGACTGCCCATGGTGTCCTTAAAGATGGTTGGAGCT-CCCTCAG-AC 1614 Query 1454 GCTACTACCTGAACAATTTTGCTGATGGAACTAAGCAGGATGCAATTGATCTTGTGCAAG 1513 |||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||| Sbjct 1615 GCTATTACCTGAATAACTTTGCTGATGGAACTAAGCAGGATGCAATTGATCTCCTGCAAG 1674 Query 1514 GACACTATATAGTTGCTGTGAGCCGAGACATGGCTCCTGTGCCTCGAAAGCG-AGGTCTT 1572 | ||||| |||||||||||||||||||||||||||||||| |||| |||| | ||| ||| Sbjct 1675 GGCACTACATAGTTGCTGTGAGCCGAGACATGGCTCCTGTACCTC-AAAGGGGAGGCCTT 1733 Query 1573 GAGGCTGTAGCTAACTTTCCAGTGGCTTTGA-CGGTGATTCTGATCAGTTTCTGGTTTGC 1631 ||||||||||| ||||| |||||||| ||| || || ||||||| |||||||||||||| Sbjct 1734 GAGGCTGTAGCCAACTTCCCAGTGGCATTGTTCG-TGGTTCTGATGAGTTTCTGGTTTGC 1792 Query 1632 AACAATGTCTGTGAAACAAGTTGGGAGTGGTTATAAGCACTT-GC--TT-TTCT-CAC-T 1685 |||| ||||| | ||||||| |||||||| ||||||||| | || || |||| | | | Sbjct 1793 AACAGTGTCTCTAAAACAAGCTGGGAGTGATTATAAGCA-TAAGCACTTATTCTTCTCAT 1851 Query 1686 GGTT-TGGGCGGGCATCAGTGTAG-C-TGTCGCGGCACTCGTGAGGGCCAATGGCCGTAT 1742 ||| ||| |||| || |||| | | || || ||||| |||||||| |||||||| || Sbjct 1852 TGTTGTGGACGGGAATTTGTGTGGGCATG--GCTGCACTGGTGAGGGCAAATGGCCGGAT 1909 Query 1743 CTTCTGCAACCGGCCTAGTCTGCACAAGCCCAGA 1776 |||||||||||||||| ||||||||||||||||| Sbjct 1910 CTTCTGCAACCGGCCTCGTCTGCACAAGCCCAGA 1943 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66886470220 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5