BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66020.1
Length=1782
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497020 jgi|Araly1|497020|fgenesh2_kg.8__2836__AT5G66020.1 2804 0.0
Ahg485497 jgi|Araly1|485497|fgenesh2_kg.5__1489__AT3G51460.1 1840 0.0
> Ahg497020 jgi|Araly1|497020|fgenesh2_kg.8__2836__AT5G66020.1
Length=1782
Score = 2804 bits (1518), Expect = 0.0
Identities = 1707/1795 (95%), Gaps = 26/1795 (1%)
Strand=Plus/Plus
Query 1 ATGGTGAGTAGGCTCAAGATACACTCTGGCTTGCGTTTGTGGGAATTCCCTGATCAGTAC 60
|||| | |||||| |||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGAGGGTAGGCACAAGTTACACTCTGGCTTGCGTTTATGGGAATTCCCTGATCAGTAC 60
Query 61 GTCATCGAGCCAACCGATGGTTCCTCCGCTTCATGTTTGGATATTAGTCGTCTTGACGGC 120
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 61 GTCATCGAGCCAACCGATGGTTCCTCCGCTTCATGTTTGGACATTAGCCGTCTTGACGGC 120
Query 121 TCCATGAAGCTCATTGATCAAGTAGCAGAATGCAACTCTTTGCGTGTCCCTAAAATCCGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCATGAAGCTCATTGATCAAGTAGCAGAATGCAACTCTTTGCGTGTCCCTAAAATCCGC 180
Query 181 TCCATTTTCGGTGTGGTTGGGATGCTGAAGCTCCTGGCAGGATCCTACTTAGTAGTTGTG 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCATTTTCGGTGTGGTCGGGATGCTGAAGCTCCTGGCAGGATCCTACTTAGTAGTTGTG 240
Query 241 ACAGAGAGCGAATCTGTTGGCTCGTTTTTGGGACATCCTATATACAAAATTAATTCGCTC 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 ACAGAGAGCGAATCTGTTGGCTCGTTTTTGGGACATCCTATATTCAAAATTAATTCGCTC 300
Query 301 AAGTTTCTTCCATGTGATCATTCACTTGAAAACCCGCATGAAGAACAGAAAAAGATGGAG 360
||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 301 AAGTTTCTTCCTTGTGATCATTCACTTGAAAACTCTCATGAAGAACAGAAAAAGATGGAG 360
Query 361 ACTGATGACTACTCTAGGCTGCTAAGTGTCGCTGAGAGGACAACTGGTCTCTACTTCTCA 420
|| ||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 361 AC---TGACTTCTCTAGGCTGCTAAGCGTCGCAGAGAGGACAACTGGGCTCTACTTCTCA 417
Query 421 TATGAAATTAACTTGACTCTCACTGCACAGCGCTTGCATGATTTGGGTGATGAGTCTAAG 480
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 418 TATGAAATAAACTTGACTCTCACCGCACAGCGGTTGCATGATTTGGGTGATGAGTCTAAG 477
Query 481 TTGCTTCCTTTGTGGAGACAGGCTGAGCCTAGATTTCTATGGAACAATTATATGTTAGAA 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 478 TTGCTTCCTTTGTGGAGACAGGCTGAGCCTAGATTTCTATGGAACAACTATATGTTAGAA 537
Query 541 GTTCTTATCGATAATAAGCTTGATCAGTTCTTGCTTCCTGTAA--TT-C--AA----G-- 589
||||||||||| ||||||||||||||||||||||||||| || || | || |
Sbjct 538 GTTCTTATCGAAAATAAGCTTGATCAGTTCTTGCTTCCTACAATTTTCCTTAACCCTGCA 597
Query 590 GGA-GTTTTCATAGTTTTCAAACAGCCATTGGAAGAGATATCGTTGACATTACTCTGATT 648
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TCACGTTTTCATAGTTTTCAAACAGCCATTGGAAGAGATATCGTTGACATTACTCTGATT 657
Query 649 GCTAGGAGGTGCTCTAGAAGAAATGGTACACGCATGTGGCGACGAGGAGCTGACCCTGAT 708
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 658 GCTAGGAGATGCTCTAGAAGAAATGGTACGCGCATGTGGCGACGAGGAGCTGACCCTGAT 717
Query 709 GGTTATGTTGCTAATTTTGTGGAGACTGAGCAAATTGTACGCATGAACGGATACACATCA 768
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 718 GGTTATGTTGCTAATTTTGTGGAGACTGAGCAAATTGTGCGCATGAACGGATACACATCA 777
Query 769 TCCTTTGTTCAGATTAGAGGATCCATGCCTTTTATGTGGGAGCAAATTGTAGATCTGACC 828
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TCATTTGTTCAGGTTAGAGGATCCATGCCTTTTATGTGGGAGCAAATTGTAGATCTGACC 837
Query 829 TACAAGCCCAAGTTTGAGATTGTCCAACCTGAAGAAGCTGCGAGGATAGCTGAGCGTCAC 888
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 838 TACAAGCCCAAGTTTGAGATTGTCCAACCTGAAGAAGCTGTGAGGATAGCTGAGCGTCAC 897
Query 889 TTTCTCGACTTAAGGAAAAAATATGGATCAGTTTTGGCGGTTGATCTTGTCAATAAGCAT 948
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TTTCTCGGCGTAAGGAAAAAATATGGATCAGTTTTGGCGGTTGATCTTGTCAATAAGCAT 957
Query 949 GGAGGTGAAGGGCGCCTAAGTGAGAGGTTTGCAGGTGCTATGCAGCACATCACTGGTGAT 1008
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 958 GGAGGTGAGGGGCGCCTAAGTGAAAGGTTTGCAGGTGCTATGCAGCACATCACTGGTGAT 1017
Query 1009 GATGTAAGATACCTGCACTTTGATTTCCATCACATCTGTGGCCATATTCACTTTGAGCGC 1068
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1018 GATGTAAGATACCTGCACTTTGATTTCCATCACATATGTGGCCATATTCACTTTGAGCGC 1077
Query 1069 TTAGCAATTCTGTATGAGCAGATGGAGGATTTCCTCGAGAAAAACGGGTACTTTTTGTTG 1128
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TTAGCAATTTTGTATGAGCAGATGGAGGATTTCCTCGAGAAAAACGGGTACTTTTTGTTT 1137
Query 1129 AATGAAAAGGGTGAGAAAATGAAGGAGCAGCTTGGTATTGTGCGAACCAACTGCATAGAT 1188
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1138 AATGAAAAGGGTGAGAAAATGAAGGAGCAGCTTGGTATTGTGCGAACAAACTGCATAGAT 1197
Query 1189 TGCTTAGACCGTACTAATGTCACCCAGAGTATGATAGGCCGAAAGC-TGTTGGAACTTCA 1247
|||||||||||||||||| | | | | |||||||||||| | |||||||| ||||
Sbjct 1198 TGCTTAGACCGTACTAAT---AGC-A---T--GATAGGCCGAAA-CATGTTGGAATTTCA 1247
Query 1248 ACTCAAAAGGATTGGTGTTTTTGGTGCCGAAGAGACCATACGCTCGCATCAAAACTTTGA 1307
|||||||||||||||||||||||||||||||||| | ||| |||||||| |||| |||||
Sbjct 1248 ACTCAAAAGGATTGGTGTTTTTGGTGCCGAAGAGGCTATAAGCTCGCATAAAAATTTTGA 1307
Query 1308 CGAATGCTATAAGATATTGTGGGCTAATCACGGTGATGACATTAGCATTCAGTACTCCGG 1367
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1308 TGAATGCTATAAGATATTGTGGGCTAATCACGGTGATGACATTAGCATTCAATACTCCGG 1367
Query 1368 CACTCCTGCACTTAAAGGAGATTTTGTCAGGTATGGTCAAAGGACTATCCAAGGAGTCCT 1427
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1368 CACTCCTGCACTTAAAGGAGATTTTGTCAGGTATGGTCAAAGGACTGTCCAAGGAGTCCT 1427
Query 1428 TCAAGATGGCTGGAATGCCCTCGCACGCTACTACCTGAACAATTTTGCTGATGGAACTAA 1487
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1428 TCAAGATGGCTGGAATGCCCTCGCACGCTACTATCTGAACAATTTTGCTGATGGAACTAA 1487
Query 1488 GCAGGATGCAATTGATCTTGTGCAAGGACACTATATAGTTGCTGTGAGCCGAGACATGGC 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 GCAGGATGCAATTGATCTTGTGCAAGGACACTATATAGTTGCTGTGAGCCGAGACATGGC 1547
Query 1548 TCCTGTGCCTCGAAAGCGAGGTCTTGAGGCTGTAGCTAACTTTCCAGTGGCTTTGACGGT 1607
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1548 TCCTGTGCCTCGAAAGGGAGGTCTTGAGGCTGTAGCTAACTTTCCGGTGGCTTTGATGGT 1607
Query 1608 GATTCTGATCAGTTTCTGGTTTGCAACAATGTCTGTGAAACAAGTTGGGAGTGGTTATAA 1667
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1608 GATTCTGATCAGTTTCTGGTTTGCAACAATGTCTGTCAAACAAGTTGGGAGTAGTTATAA 1667
Query 1668 GCACTTGCTTTTCTCACTGGTTTGGGCGGGCATCAGTGTAGCTGTCGCGGCACTCGTGAG 1727
|||||| |||||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1668 GCACTTATTTTTCTCATTTGTTTGGGCGGGCATCAGTGTAGCTGTCGCAGCACTCGTGAG 1727
Query 1728 GGCCAATGGCCGTATCTTCTGCAACCGGCCTAGTCTGCACAAGCCCAGATCTTGA 1782
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1728 GGCCAATGGCCGGATCTTCTGCAACCGGCCTTGTCTGCACAAGCCCAGATCTTGA 1782
> Ahg485497 jgi|Araly1|485497|fgenesh2_kg.5__1489__AT3G51460.1
Length=2162
Score = 1840 bits (996), Expect = 0.0
Identities = 1523/1774 (86%), Gaps = 50/1774 (3%)
Strand=Plus/Plus
Query 34 CGTTTGTGGGAATTCCCTGATCAGTACGTCATCGAGCCAACCGATGGTTCCTCCGCTTCA 93
||||| ||||||||||| ||||||||| ||||||||||| | |||||||| |||||||
Sbjct 189 CGTTTATGGGAATTCCCCGATCAGTACATCATCGAGCCAGCTGATGGTTCAGGCGCTTCA 248
Query 94 TGTTTGGATATTAGTCGTCTTGACGGC-TCCATGAAGCTCATTGATCAAGTAGCAGAATG 152
|||||||||||||||||| |||| || |||||||||||||| ||||| || ||||| |
Sbjct 249 TGTTTGGATATTAGTCGTGTTGA-TGCTTCCATGAAGCTCATCGATCATGTCCCAGAAAG 307
Query 153 CAACTCTTTGCGTGTCCCTAAAATCCGCTCCATTTTCGGTGTGGTTGGGATGCTGAAGCT 212
||| || |||| |||||||||||||| |||||||| ||||||||||||||| |||||||
Sbjct 308 CAATTCCGTGCGAGTCCCTAAAATCCGTTCCATTTTTGGTGTGGTTGGGATGTTGAAGCT 367
Query 213 CCTGGCAGGATCCTACTTAGTAGTTGTGACAGAGAGCGAATC-TGTTGGCTCGTTTTTGG 271
||| |||||||| ||||| || ||||| || ||||| ||| | |||||| |||||| |||
Sbjct 368 CCTTGCAGGATCATACTTGGTGGTTGTAACCGAGAGTGAA-CGTGTTGGATCGTTTCTGG 426
Query 272 GACATCCTATATACAAAATTA-ATTCGCTCAAGTTTCTTCCATGTGATCATTCACTTGAA 330
| |||||||||| |||||||| | |||| ||| ||||||| ||||||||||||||| ||
Sbjct 427 GCCATCCTATATTCAAAATTACA-ACGCTTAAGGTTCTTCCTTGTGATCATTCACTTCAA 485
Query 331 AACCCGCATGAAGAACAGAAAAAGATGGAGACTGATGACTACTCTAGGCTGCTAAGTGTC 390
||| | | ||||||||||||||||||||||||||| | | ||| | |||||| ||||||
Sbjct 486 AACTCACCTGAAGAACAGAAAAAGATGGAGACTGA-G--TTCTCCAAGCTGCTGAGTGTC 542
Query 391 GCTGAGAGGACAACTGGTCTCTACTTCTCATATGAAATTAACTTGACTCTCA-CTGCACA 449
|| || | ||||||||||||||| |||||||||||| ||||||| || || | || ||||
Sbjct 543 GCAGAAAAGACAACTGGTCTCTATTTCTCATATGAAGTTAACTTAACACTGAGCT-CACA 601
Query 450 GCGCTTGCATGATTTGGGTGATGAGTCTAAGTTGCTTCCTTTGTGGAGACAGGCTGAGCC 509
|| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 602 ACGGTTGCATGATTTGGGTGATGAGTCTAAGTCACTTCCTCTGTGGAGACAGGCTGAGCC 661
Query 510 TAGATTTCTATGGAACAATTATATGTTAGAAGTTCTTATCGATAATAAGCTTGATCAGTT 569
|| ||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 662 GAGGTTTCTTTGGAACAATTACATGTTGGAAGTTCTAATCGATAATAAGCTTGATCAGTT 721
Query 570 CTTGCTTCCTGTAATTCAAGGG---A--GTTT-TCAT-AG-T-TTTCAAACAGCCATTGG 620
||||||||| |||||||||||| | ||| | || || | ||| |||||||||||||
Sbjct 722 CTTGCTTCCAGTAATTCAAGGGAATATCCTTTGTTATCAGTTCTTTGAAACAGCCATTGG 781
Query 621 AAGAGATATCGTTGACATTACTCTGATTGCTAGGAGGTGCTCTAGAAGAAATGGTACACG 680
||||||||| |||||||||||||||||||||||||| ||| |||| ||||| ||||||||
Sbjct 782 AAGAGATATTGTTGACATTACTCTGATTGCTAGGAGATGCACTAGGAGAAACGGTACACG 841
Query 681 CATGTGGCGACGAGGAGCTGACCCTGATGGTTATGTTGCTAATTTTGTGGAGACTGAGCA 740
||||||||| |||||||||| | |||||| |||||||||||||||||||||||||||||
Sbjct 842 TATGTGGCGAAGAGGAGCTGATCTTGATGGCTATGTTGCTAATTTTGTGGAGACTGAGCA 901
Query 741 AATTGTACGCATGAACGGATACACATCATCCTTTGTTCAGATTAGAGGATCCATGCCTTT 800
|||||||| ||||| ||||| | ||||| ||||| ||| | || |||||||| |||||
Sbjct 902 AATTGTACAAATGAATGGATATTCTTCATCATTTGTGCAGGTCAGGGGATCCATACCTTT 961
Query 801 TATGTGGGAGCAAATTGTAGATCTGACCTACAAGCCCAAGTTTGAGATTGTCCAACCTGA 860
||||||||||||| |||||||||| || ||||| ||||||||||| ||||||||||||||
Sbjct 962 TATGTGGGAGCAAGTTGTAGATCTAACTTACAAACCCAAGTTTGAAATTGTCCAACCTGA 1021
Query 861 AGAAGCTGCGA-GGATAGCTGAGCGTCACTTTCTCGAC-TTAAGGAAAAAATATGGATCA 918
||||||| | | |||||||||||||||||||| | ||| ||| |||||||||||||||||
Sbjct 1022 AGAAGCTAC-ACGGATAGCTGAGCGTCACTTTTTGGACCTTA-GGAAAAAATATGGATCA 1079
Query 919 GTTTTGGCGGTTGATCTTGTCAATAAGCATGGAGGTGAAGGGCGCCTAAGTGAGAGGTTT 978
|||||||| ||||| ||||| ||||||||||| ||||| |||||| |||| |||| || |
Sbjct 1080 GTTTTGGCAGTTGACCTTGTTAATAAGCATGGCGGTGAGGGGCGCTTAAGCGAGAAGTAT 1139
Query 979 GC-AGGTGCTATGCAGCACATCACTGGTGATGATGTAAGATACCTGCACTTTGATTTCCA 1037
|| | || |||||| ||||| |||| |||||| |||||||||||||||| ||||||||
Sbjct 1140 GCTAC-TGTTATGCAACACATTGCTGGGGATGATATAAGATACCTGCACTTCGATTTCCA 1198
Query 1038 TCACA-TCTGTGGCCATATTCACTTTGAGCGCTTAGCAATTCTGTATGAGCAGATGGAGG 1096
||| | | ||||| |||||||| |||||||||||| ||||||| || |||||||| ||||
Sbjct 1199 TCA-AGTTTGTGGGCATATTCATTTTGAGCGCTTATCAATTCTTTACGAGCAGATCGAGG 1257
Query 1097 A-TTTCCTCGAGAAAAACGGGTACTTTTTGTTGAATGAAAAGGGTGAGAAAATGAAGGAG 1155
|||| |||| ||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1258 GGTTTC-TCGAAAAAAATGGGTACTTTCTGTTGAATGAAAAGGGTGAGAAAATGAAGGAC 1316
Query 1156 CAGCTTGGTATTGTGCGAACCAACTGCATAGATTGCTTAGACCGTACTAATGTCACCCAG 1215
||||||||| |||| ||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 1317 CAGCTTGGTGTTGTCCGATCAAACTGCATAGATTGCTTAGACCGTACAAATGTCACCCAG 1376
Query 1216 AGTATGATAGGCCGAAAGCTGTTGGAACTTCAACTCAAAAGGATTGGTGTTTTTGGTGCC 1275
|| |||||||| ||||| |||| ||||||||||||||||||||||| |||||||| ||
Sbjct 1377 AGCATGATAGGTCGAAAAATGTTAGAACTTCAACTCAAAAGGATTGGAGTTTTTGGCGCT 1436
Query 1276 GAAGAGACCATACGCTCGCATCAAAACTTTGACGAATGCTATAAGATATTGTGGGCTAAT 1335
||||| |||||| |||| |||| || ||||||||| |||||| ||||| |||||||||
Sbjct 1437 GAAGAAACCATAAGCTCACATCTGAATTTTGACGAACACTATAAAATATTATGGGCTAAT 1496
Query 1336 CACGGTGATGACATTAGCATTCAGTACTCCGGCACTCCTGCACTTAAAGGAGATTTTGTC 1395
|| |||||||| || |||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 1497 CATGGTGATGAAATCAGCATTCAGTACTCTGGTACTCCTGCACTTAAAGGAGATTTCGTT 1556
Query 1396 AGGTATGGTCAAAGGACTATCCAAGGAGTCCTTCAAGATGGCTGGAA-TGCCCTC-GCAC 1453
|||||||| || ||||| ||| || |||||| ||||||| |||| | ||||| | ||
Sbjct 1557 AGGTATGGGCATCGGACTGCCCATGGTGTCCTTAAAGATGGTTGGAGCT-CCCTCAG-AC 1614
Query 1454 GCTACTACCTGAACAATTTTGCTGATGGAACTAAGCAGGATGCAATTGATCTTGTGCAAG 1513
|||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1615 GCTATTACCTGAATAACTTTGCTGATGGAACTAAGCAGGATGCAATTGATCTCCTGCAAG 1674
Query 1514 GACACTATATAGTTGCTGTGAGCCGAGACATGGCTCCTGTGCCTCGAAAGCG-AGGTCTT 1572
| ||||| |||||||||||||||||||||||||||||||| |||| |||| | ||| |||
Sbjct 1675 GGCACTACATAGTTGCTGTGAGCCGAGACATGGCTCCTGTACCTC-AAAGGGGAGGCCTT 1733
Query 1573 GAGGCTGTAGCTAACTTTCCAGTGGCTTTGA-CGGTGATTCTGATCAGTTTCTGGTTTGC 1631
||||||||||| ||||| |||||||| ||| || || ||||||| ||||||||||||||
Sbjct 1734 GAGGCTGTAGCCAACTTCCCAGTGGCATTGTTCG-TGGTTCTGATGAGTTTCTGGTTTGC 1792
Query 1632 AACAATGTCTGTGAAACAAGTTGGGAGTGGTTATAAGCACTT-GC--TT-TTCT-CAC-T 1685
|||| ||||| | ||||||| |||||||| ||||||||| | || || |||| | | |
Sbjct 1793 AACAGTGTCTCTAAAACAAGCTGGGAGTGATTATAAGCA-TAAGCACTTATTCTTCTCAT 1851
Query 1686 GGTT-TGGGCGGGCATCAGTGTAG-C-TGTCGCGGCACTCGTGAGGGCCAATGGCCGTAT 1742
||| ||| |||| || |||| | | || || ||||| |||||||| |||||||| ||
Sbjct 1852 TGTTGTGGACGGGAATTTGTGTGGGCATG--GCTGCACTGGTGAGGGCAAATGGCCGGAT 1909
Query 1743 CTTCTGCAACCGGCCTAGTCTGCACAAGCCCAGA 1776
|||||||||||||||| |||||||||||||||||
Sbjct 1910 CTTCTGCAACCGGCCTCGTCTGCACAAGCCCAGA 1943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66886470220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5