BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66030.1
Length=2836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg359610 jgi|Araly1|359610|fgenesh1_pg.C_scaffold_472000001 878 0.0
> Ahg359610 jgi|Araly1|359610|fgenesh1_pg.C_scaffold_472000001
Length=663
Score = 878 bits (475), Expect = 0.0
Identities = 629/696 (90%), Gaps = 39/696 (6%)
Strand=Plus/Plus
Query 231 ATGTCCGAAGACAAGGAATCTGATGTGGTTGGAGAAGAAGAGGAGAGCCATGTGATCAAA 290
|||||||||||||||||||||||||||| | | ||||||||||||||| || || ||
Sbjct 1 ATGTCCGAAGACAAGGAATCTGATGTGG-T--CGCAGAAGAGGAGAGCCA--TG-TCCAA 54
Query 291 GAAGATAAAGAGTTAAATGATGCCTCCAACGAGACTCT---GACAGAAAATGGTGATCAG 347
|||||| || |||||||||| || ||||||| ||| ||||||||||| |||||||
Sbjct 55 GAAGAT---GACATAAATGATGCGTCAAACGAGAATCTGACGACAGAAAATGATGATCAG 111
Query 348 CTACTCCAAATGATTGCTGAACTGAGATTAGAAAATGACTTTCTCAGATCCCAATTTGAG 407
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 112 CTACTCCAAACGATTGCTGAACTGAGATTAGAAAATGACTTTCTCAGATCCCAATTT-AA 170
Query 408 GGACTCAAGGATGAGGTAGCGCAAGGTAGGTCTCTCCAGAAAGCTGAGCAAGTGGAAGCG 467
||| |||| | | | | | |||| ||||| ||| | | | ||||||||||||
Sbjct 171 GGA-TCAA-G-T-A-G-A--GCAAAGTAGG--TCT-C----A-C----CAAGTGGAAGCG 210
Query 468 GACTCTGCTCAGCTGAAACAACTTCAAGAACAGGTCGCATCATTGAGCAGAGAAATTGAT 527
|| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 GA-----C-CAATTGAAACAACTTCAAGAACAGGTCGCATCATTGAGCAGAGAAATTGAT 264
Query 528 GTGGAAAAACAAACTCGAGTTGCAGCTGAGCAAGCTCTTGAGCATCTAAGGGAAGCATAC 587
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 265 GTGGAAAAGCAAACTCGAGTTGCAGCTGAGCAAGCTCTTGAGCATCTTAGGGAAGCATAC 324
Query 588 TCTGAGGCTGATGCTAAATCCCAAGAATACTCCTCTAAGTTTTCCCAAGTTGAACAGAAA 647
|||||||||||||| ||| |||| ||||||||| ||||||||||||||||||||||||||
Sbjct 325 TCTGAGGCTGATGCAAAAGCCCAGGAATACTCCACTAAGTTTTCCCAAGTTGAACAGAAA 384
Query 648 CTGGACCAGGAAATCAAAGAGCGCGACGAGAAATATGCCGACCTGGACGCCAAATTCACC 707
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 385 CTGGACCAGGAAATCAAAGAGCGAGACGAGAAATACGCCGACCTGGACGCCAAATTCACT 444
Query 708 AGGCTTCACAAAAGGGCTAAACAACGCATTCAAGAAATCCAAAAGGAAAAAGATGATCTC 767
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 445 AGGCTTCACAAAAGGGCTAAACAGCGCATTCAAGAAATCCAAAAGGAAAAAGATGATCTC 504
Query 768 GACGCCCGTTTCCGGGAAGTGAATGAAACAGCTGAACGAGCATCTTCTCAACACTCATCC 827
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 505 GACGCCCGTTTCCGGGAAGTGAATGAAACAGCTGAACGAGCATCTTCTCAGCACTCATCC 564
Query 828 ATGCAACAAGAGCTGGAACGCACTAGGCAACAGGCGAATGAAGCACTTAAAGCAATGGAT 887
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 565 ATGCAACAAGAGCTGGAACGCACTAGGCAACAGGCGAATGAAGCACTGAAAGCTATGGAT 624
Query 888 GCGGAGAGGCAACAACTAAGGAGTGCCAATAACAAG 923
|| |||||||||||||||||||||||||||||||||
Sbjct 625 GCAGAGAGGCAACAACTAAGGAGTGCCAATAACAAG 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107033588450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5