BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66040.1
Length=616
Score E
Sequences producing significant alignments: (Bits) Value
Ahg887724 jgi|Araly1|887724|Al_scaffold_0472_2 377 4e-104
> Ahg887724 jgi|Araly1|887724|Al_scaffold_0472_2
Length=243
Score = 377 bits (204), Expect = 4e-104
Identities = 235/249 (94%), Gaps = 6/249 (2%)
Strand=Plus/Plus
Query 38 ATGGCGGAGGAGAGCAGAGTCCCATCATCGGTGTCGGTAACAGTCGCCCACGACCTTCTT 97
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCGGAGGAGAGTAGAGTCCCATCATCGGTGTCGGTCACAGTCGCCCACGACCTTCTT 60
Query 98 CTAGCCGGCCACCGCTATCTAGACGTCAGGACTCCAGAAGAGTTCAGCCAGGGACATGCC 157
|||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||
Sbjct 61 CTAGCCGGCCACCGCTATCTAGACGTCA---CTCTAGAAGAGTTCAGGCAGGGACATGCC 117
Query 158 TGTGGGGCGATCAACGTGCCTTACATGAATCGAGGAGCATCAGGGATGTCAAAGAACCCC 217
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 118 TGTGGGGCGATCAACGTGCCTTACATGAACCGAGGAGCATCA---ATGTCAAAGAACCCC 174
Query 218 GACTTCCTGGAACAAGTCTCCTCCCATTTCGGACAATCCGATAACATCATTGTTGGCTGC 277
||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 175 GACTTCCTGGAACAAGTGTCCTCCCATTTCGGACAATCCGACAACATCATTATTGGCTGC 234
Query 278 CAGAGCGGT 286
|||||||||
Sbjct 235 CAGAGCGGT 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22530643947
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5