BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66055.1
Length=1607
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497012 jgi|Araly1|497012|fgenesh2_kg.8__2828__AT5G66055.2 1646 0.0
> Ahg497012 jgi|Araly1|497012|fgenesh2_kg.8__2828__AT5G66055.2
Length=1562
Score = 1646 bits (891), Expect = 0.0
Identities = 1019/1079 (94%), Gaps = 15/1079 (1%)
Strand=Plus/Plus
Query 30 AATGCAGTCActctccaccccacacaccatctctcttcttct------ccccagaacctc 83
||||||||| ||| |||| |||||||||||| |||||||||| |||| | |||||
Sbjct 1 AATGCAGTCCCTCGCCACACCACACACCATCACTCTTCTTCTCCCCGGCCCCGGGACCTC 60
Query 84 tccgtctcgtctttctccctctcttcactcccttgctttcccCACTCGATTACGGTCTCT 143
||||||||||||||||||||||||||||||| ||| ||||||||| |||||||| |||||
Sbjct 61 TCCGTCTCGTCTTTCTCCCTCTCTTCACTCCATTGTTTTCCCCACACGATTACGCTCTCT 120
Query 144 TTCCTATTCTTCTCAAACGTCGATCCTCCCCGATGCCGGCGATGATTTCATTGTCGGTGA 203
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 TTCCTATTCTTCTCAGACGTCGATCCTCCCCGATGCCGGCGATGATTTCATCGTCGGTGA 180
Query 204 CTGTCTCGTCTACGAGGACGGCGTCTTCGAAGACCCTTACCTTGATAAGGAGGTCACTCA 263
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 181 CTGTCTCGTCTACGAGGACGGCGTCTTCGAAGACCCTTACCTTGAGACGGAGGTCACTCC 240
Query 264 GGTTGCGAAGCAGGAGCGCAAGAAGAATCGGCGTGGCGGGGCTAAGAGATTAGATGAATC 323
||||||||||| | | |||| ||||| ||| || ||||| |||||||||||||||||
Sbjct 241 GGTTGCGAAGC---A--G-AAGAGGAATCCGCGGGGTGGGGCCAAGAGATTAGATGAATC 294
Query 324 CGAGATTGAGCCCGAGAACCTCGTGCCAGAGGAATGGAGGGATATTCAGGCGGAGGTGAA 383
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 295 CGAGATTGAACCCGAGAACCTCGTGCCGGAGGAATGGAGGGATATTCAGGCGGAGGTGAA 354
Query 384 TCTGACGAAGAAGGACAAGCGCAAAATAGCGCAGGAGATGGAGTTCGGGGTTCGGGTGGA 443
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 355 TCTGACCAAGAAGGACAAGCGCAAGATAGCGCAGGAGATGGAGTTCGGGGTTCGGGTGGA 414
Query 444 GAAGAAGAGGCAAGGGCTAATTCCGCTGAGGAAAGTTGACTTGAATGACTTTCTCACGTA 503
||||||||| |||||||| |||||||||||||| || ||||||||||||||||| |||||
Sbjct 415 GAAGAAGAGACAAGGGCTGATTCCGCTGAGGAACGTCGACTTGAATGACTTTCTGACGTA 474
Query 504 CAAGGAAGCCAAGTTGGCTCAATTGAGGCCTGTCATTCTCGATAAACCGGGAAATTTCTC 563
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 475 CAAGGAAGCCAAGTTGGCTCAATTGAGGCCTGTCACTCTCGATAAACCGGGCAATTTCTC 534
Query 564 CGACGACAGTGGAGCGTCAAGCGATGGAGAGACCGCTGTATCATCTCCCAGCGAGCGAGT 623
|||| || || |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 535 CGAC--CA-TGCAGCGTCAAGCGATGGAGAGACCGCTGTATCATCTTCCAGCGAGCGAGT 591
Query 624 GGCTCCTAAGAACCCTAGATGGGCAGTTTACGGAAAGGGATTCGACCACGTTGCCAAGTT 683
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 592 GGCTCCTAAGAACCCTAGATGGGCAGTTTACGGCAAGGGATTCGACCACGTTGCCAAGTT 651
Query 684 CTTCAATAGCGACAAGTACGATCCCAGCGACAAGAAATCCGACGGCCCTCGAAAGCTGCT 743
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 652 CTTCAATAGCGACAAATACGATCCCAGCGTCAAGAAATCCGACGGCCCTCGAAAGCTTCT 711
Query 744 TTCAAAAGAAGAGAAGTTTATGCTCAATAGCCGGAATCCTGACCTAGCCGTTGCCACATC 803
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 712 TTCAAAAGAAGAAAAGTTTATGCTCAATAGCCGGAATCCTGACCTAGCAGTTGCCACATC 771
Query 804 aaaaaaaTGGCTTCCTCTTCACACACTGGCAGCATGTGGAGAGTTTTATCTGGTTGATTC 863
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 772 AAAAAAATGGCTTCCTCTTCACACGCTGGCAGCATGTGGAGAGTTTTATCTGGTTGATTC 831
Query 864 CTTGCTAAAGCACAATCTTGATATCAATGCAACCGATGTGGGCGGCTTGACAGTACTTCA 923
||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||
Sbjct 832 CTTGCTAAAGCACAATCTTGATATCAACGCAACCGACGTGGGCGGCTTGACAGCACTTCA 891
Query 924 CCGAGCAATCATTGGTAAGAAGCAGGCTATTACTAACTACCTGCTGAGGGAATCGGCAAA 983
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 892 CCGAGCAATCATTGGTAAAAAGCAGGCTATTACCAACTACCTGCTGAGGGAATCGGCAAA 951
Query 984 TCCATTTGTTCTTGATGACGAAGGTGCGACCTTGATGCACTATGCTGTGCAAACAGCATC 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TCCATTTGTTCTTGATGACGAAGGTGCGACCTTGATGCACTATGCTGTGCAAACAGCATC 1011
Query 1044 AGCTCCCACAATAAAACTTCTCCTACTGTATAACGCTGATATAAACGCTCAGGACAGGG 1102
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 AGCTCCCACAATAAAACTTCTCCTACTGTATAACGCTGATATAAACGCTCAGGACAGGG 1070
Score = 420 bits (227), Expect = 2e-116
Identities = 263/280 (94%), Gaps = 4/280 (1%)
Strand=Plus/Plus
Query 1101 GGACGGGTGGACTCCACTGCACGTTGCAGTACAGGCCAGAAGAAGCGACATTGTAAAGCT 1160
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1138 GGACGGGTGGACTCCCCTGCACGTTGCAGTACAGGCCAGAAGAAGCGACGTTGTAAAGCT 1197
Query 1161 TCTTTTGATAAAAGGGGCGGACATAGAAGTGAAGAACAAGGATGGGTTAACTCCGCTTGG 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TCTTTTGATAAAAGGGGCGGACATAGAAGTGAAGAACAAGGATGGGTTAACTCCGCTTGG 1257
Query 1221 GCTTTGCCTCTACCTTGGAAGAGAGATAAGGACGTATGAGGTGATGAAGCTGTTGAAAGA 1280
|||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||
Sbjct 1258 GCTTTGCCTCTACCTTGGAAGAGAGACAAGGACATATGAGGTGATGAAGATGTTGAAAGA 1317
Query 1281 GTTTCCACT-TAGCAGACACAAGAAGAGATTGGTAACAACAGATGAAGATATTGAATAGT 1339
|||||| || |||||||||||||||||||||| ||||||| ||||||| ||| |||||||
Sbjct 1318 GTTTCC-CTGTAGCAGACACAAGAAGAGATTGATAACAACCGATGAAGCTATAGAATAGT 1376
Query 1340 CCT-TTCAATTTCAGCTTGAAGTACACTCACTTATGAGAA 1378
| | || |||| |||||||||| |||||||||| ||||||
Sbjct 1377 CGTCTT-AATTGCAGCTTGAAGCACACTCACTTGTGAGAA 1415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60220677345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5