BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66060.1
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497011 jgi|Araly1|497011|fgenesh2_kg.8__2827__AT5G66060.1 1343 0.0
> Ahg497011 jgi|Araly1|497011|fgenesh2_kg.8__2827__AT5G66060.1
Length=804
Score = 1343 bits (727), Expect = 0.0
Identities = 775/799 (97%), Gaps = 0/799 (0%)
Strand=Plus/Plus
Query 1 ATGATGGCGAGACCGAGGAATCATCGTCCTTCAGCTCGGAAATCCTCGCATTCAACGCTC 60
|||||||| |||||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 1 ATGATGGCAAGACCGAGGAGTCATCGTCCTTCAGCTCGGAAATCCTCCCGTTCAACGCTC 60
Query 61 GTCTTCGCCGTATTGATCATGTCCACTTTCGTGATTTTGATTCTTCTCGCCTTTGGAATT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTCTTCGCCGTATTGATCATGTCCACTTTCGTGATTTTGATTCTTCTCGCCTTTGGAATT 120
Query 121 CTCTCGGTGCCCAGCAACAATGCCGGATCCTCAAAAGCCAATGATCTCACTTCTATTGTC 180
|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 121 CTCTCGGTACCCAGCAACAATGCCGGCTCCTCCAAAGCCAATGATCTCACTTCTATTGTC 180
Query 181 CGAAAAACACTTCAGAGAAGTGGCGAAGATGATTCAAAGAACGAGCGTTGGGTTGAAATA 240
|| ||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||
Sbjct 181 CGTAAAACACTTCAGAGAGGTGTCGAGGATGATTCAAAGAACGAGCGTTGGGTTGAAATT 240
Query 241 ATCTCTTGGGAACCCAGAGCTTCTGTTTACCACAATTTCTTGACAAAGGAGGAATGCAAG 300
||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||
Sbjct 241 ATCTCTTGGGAACCCAGGGCTTCTATTTACCACAGTTTCTTGACAAAGGAGGAATGCAAG 300
Query 301 TATCTAATAGAGCTAGCTAAACCGCATATGGAGAAATCAACTGTTGTCGACGAGAAGACT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATCTAATAGAGCTAGCTAAACCGCATATGGAGAAATCAACTGTTGTCGACGAGAAGACT 360
Query 361 GGAAAGAGCACAGATAGCAGGGTGCGAACGAGTTCAGGGACATTTCTCGCAAGAGGGCGT 420
||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 361 GGAAAGAGCACAGATAGCAGGGTGCGAACCAGCTCAGGGACATTTCTTGCAAGAGGGCGT 420
Query 421 GACAAAACTATCCGTGAAATTGAGAAAAGGATATCAGATTTTACATTCATACCAGTTGAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GACAAAACTATCCGTGAAATTGAGAAAAGGATATCAGATTTTACATTCATACCAGTTGAG 480
Query 481 CATGGGGAAGGTCTTCAAGTTCTGCACTATGAGATTGGGCAAAAGTATGAGCCTCATTAC 540
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 481 CATGGGGAAGGTCTTCAAGTTCTGCACTATGAGATTGGGCAGAAGTACGAGCCTCACTAC 540
Query 541 GACTACTTCATGGATGAGTATAACACTAGGAATGGGGGACAGCGGATAGCCACAGTTCTC 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GACTACTTCATGGATGAATATAACACTAGGAATGGGGGACAGCGGATAGCCACAGTTCTC 600
Query 601 ATGTACCTATCAGATGTTGAGGAGGGGGGTGAAACAGTGTTTCCTGCAGCCAAGGGAAAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGTACCTATCAGATGTTGAGGAGGGGGGTGAAACAGTGTTTCCTGCAGCCAAGGGAAAC 660
Query 661 TATAGCGCAGTGCCATGGTGGAATGAGTTGTCAGAGTGTGGGAAAGGAGGGTTGTCTGTG 720
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 TATAGCGCAGTGCCATGGTGGAATGAGTTGTCAGAGTGCGGGAAAGGAGGGTTGTCTGTG 720
Query 721 AAACCAAAGATGGGAGATGCATTGCTTTTCTGGAGCATGACGCCTGATGCGACGCTAGAC 780
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAGCCAAAGATGGGAGATGCATTGCTTTTCTGGAGCATGACGCCTGATGCGACGCTAGAC 780
Query 781 CCATCTAGTCTTCATGGTG 799
|||||||||||||||||||
Sbjct 781 CCATCTAGTCTTCATGGTG 799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43536371214
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5