BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G66070.2

Length=1005
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg497009 jgi|Araly1|497009|fgenesh2_kg.8__2825__AT5G66070.1         725    0.0  


> Ahg497009 jgi|Araly1|497009|fgenesh2_kg.8__2825__AT5G66070.1
Length=875

 Score =  725 bits (392),  Expect = 0.0
 Identities = 460/489 (94%), Gaps = 19/489 (4%)
 Strand=Plus/Plus

Query  528   CAGATGGGAGCTGTGGAGTCCCAGTTCCAAGATCATACAGACATCTTTGACACTGCCATT  587
             ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct  392   CAGATGGGAGCTGTGGAATCCCAGTTCCAAGAGCATACAGACATCTTTGACACTGCCATT  451

Query  588   TCAAAGGGTCTCACTGGGGACTCTCTCAACAGGATCCCTAAGGTCCGAATCACAGACACC  647
             ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct  452   TCAAAGGGTCTCACTGGGGACTCTCTCGACAGGATCCCAAAGGTCCGAATCACAGACACC  511

Query  648   TCTCCGGAGATTGTCTCTTGCTCTGTCTGCCTTCAGGACTTTCAGGTGGGAGAGACAGTT  707
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  512   TCTCCGGAGATTGTCTCTTGCTCTGTCTGCCTTCAGGACTTTCAGGTGGGAGAGACAGTT  571

Query  708   AGAAGTTTGCCGCACTGCCATCATATGTTCCACCTACCATGCATCGACAAATGGCTTCGC  767
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  572   AGAAGTTTGCCGCAGTGCCATCATATGTTCCACCTACCATGCATCGACAAATGGCTTCGC  631

Query  768   AGGCATGCTTCTTGTCCCTTGTGCAGAAGACATCTTTGAATTGATTTTGAAC---TCTT-  823
             ||||||||||||||||||||||||||||||||||||||||||||  ||||||   |||| 
Sbjct  632   AGGCATGCTTCTTGTCCCTTGTGCAGAAGACATCTTTGAATTGAACTTGAACACCTCTTT  691

Query  824   -CTT-T--CTTCTCTTCTTTGTACATGAGGTATAGGCATacacacacacacatatataca  879
              ||| |  |||||||||||||||||||||||||||||||||||||||| |||      ||
Sbjct  692   TCTTCTTTCTTCTCTTCTTTGTACATGAGGTATAGGCATACACACACATACA------CA  745

Query  880   cacTAGTAGTCTTCCTTGAttttttttAGATTACACGTTACACAGATTTTGATGCACCAA  939
             ||||| |||||||||||||||||||  ||||||||| |||||||||||||||||||||||
Sbjct  746   CACTACTAGTCTTCCTTGATTTTTT--AGATTACACTTTACACAGATTTTGATGCACCAA  803

Query  940   TCATTGTAACTTC---ACTCATCTCTTGGAGATCCTGTTTATTTATGCTACTTATTCTTG  996
             |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  804   TCATTGTAACTTCTTCACTCATCTCTTGGAGATCCTGTTTATTTATGCTACTTATTCTTG  863

Query  997   GCTTCATCA  1005
             |||||||||
Sbjct  864   GCTTCATCA  872


 Score =  645 bits (349),  Expect = 0.0
 Identities = 379/394 (96%), Gaps = 0/394 (0%)
 Strand=Plus/Plus

Query  65   AGATATGGATGGTTATTATTCTCTGTCTCCCATCTCTGTCCTCCACCGGATTAAAGATTC  124
            ||||||||||||||||||||||||||| ||||||||  ||||||| ||||||||||||||
Sbjct  1    AGATATGGATGGTTATTATTCTCTGTCGCCCATCTCCCTCCTCCATCGGATTAAAGATTC  60

Query  125  CTTCCATTTCGCCGTCTCTGCCCTTCTCGCCAACCTCTTCTCCGCTCTCTTCACCTTCTT  184
            |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct  61   CTTCCATTTCGCCGTCTCTGCCCTTCTCGCCAACCTCTTCTCTGCTCTTTTCACCTTCTT  120

Query  185  CTTCGCTTTAGTGGGGACTTTGCTGGGAGCATTGACAGGGGCTTTGATCGGCCAAGAAAC  244
            |||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct  121  CTTCGCTTTAGTTGGGACTTTGCTTGGAGCATTGACCGGGGCTTTGATCGGCCAAGAAAC  180

Query  245  AGAGAGCGGTTTCATCAGAGGAGCCGCCGTTGGTGCTATCTCAGGCGCCGTCTTCTCCAT  304
            ||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct  181  AGAGAGCGGTTTCATCAGAGGTGCCGCCGTTGGTGCTATCTCTGGCGCTGTCTTCTCCAT  240

Query  305  CGAAGTCTTTGAATCTTCCCTCCTCCTTTGGCAATCCGATGAGTCTGGAATTGGATGCCT  364
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  241  CGAAGTCTTTGAATCTTCCCTCCTCCTCTGGCAATCCGATGAGTCTGGAATTGGATGCCT  300

Query  365  TCTCTACTTGATTGATGTCATTGCTAGCCTTTTGAGCGGGAGGCTTGTTCGTGAGCGTAT  424
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TCTCTACCTGATTGATGTCATTGCTAGCCTTTTGAGCGGGAGGCTTGTTCGTGAGCGTAT  360

Query  425  CGGTCCTGCAATGCTAAGTGCCGTCCAGAGTCAG  458
            ||| ||||||||||||||||||||||||||||||
Sbjct  361  CGGCCCTGCAATGCTAAGTGCCGTCCAGAGTCAG  394



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37360458660


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5