BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66080.1
Length=1691
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497008 jgi|Araly1|497008|fgenesh2_kg.8__2824__AT5G66080.1 861 0.0
Ahg478621 jgi|Araly1|478621|fgenesh2_kg.3__1322__AT3G12620.1 176 5e-43
> Ahg497008 jgi|Araly1|497008|fgenesh2_kg.8__2824__AT5G66080.1
Length=1485
Score = 861 bits (466), Expect = 0.0
Identities = 520/546 (95%), Gaps = 3/546 (1%)
Strand=Plus/Plus
Query 964 AGCATAGAGTCTGTGAGGCAGGAAATGCACTCCTTACACCCTGATGACTCCCATATTGTC 1023
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 718 AGCATAGAGTCTGTGAGGCAGGAAATGCACTCCTTACATCCTGATGACTCCCATATTGTC 777
Query 1024 GTCTTAAAACACAATGTCTGGCGTGTTAAGGGCATTATTCAGGTATCACGATCCATAGGA 1083
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 778 CTCTTAAGGCACAATGTCTGGCGTGTTAAGGGCTTTATTCAGGTATCACGATCCATAGGA 837
Query 1084 GACGTGTATCTTAAGAAATCGGAGTTCAACAAGGAACCTTTGTACACAAAGTACCGATTG 1143
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||
Sbjct 838 GACGTGTATCTTAAGAAAGCGGAGTTCAACAGGGAACCTTTGTACACAAAGTACCGACTG 897
Query 1144 CGGGAGCCAATGAAAAGACCTATCTTGAGTTGGGAACCGTCGATAACCGTGCATGATCTC 1203
|||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||
Sbjct 898 CGGGAGCCCATGAAAAGACCCATCTTGAGTGGGGAACCATCGATAACCGTGCATGATCTC 957
Query 1204 CAACCAGACGATCAGTTTCTGATATTTGCATCAGACGGACTTTGGGAGCAGCTTAGCAAC 1263
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 958 CAACCAGACGATCAGTTTCTGATATTTGCATCAGACGGACTTTTGGAGCAGCTTAGCAAC 1017
Query 1264 CAAGAGGCTGTTGAAATCGTTCAGAACCACCCAAGAAACGGGATAGCGAGGAGACTGGTG 1323
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CAAGAGGCTGTTGAAGTCGTTCAGAACCACCCAAGAAACGGGATAGCGAGGAGACTGGTG 1077
Query 1324 AAAGCTGCGCTGCAGGAGGCAGCAAAGAAAAGAGAGATGAGATA-TTCTGATCTCAACAA 1382
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1078 AAAGCTGCGCTGCAGGAGGCAGCAAAGAAAAGAGAGATGAGATACTT-TGATCTCAACAA 1136
Query 1383 GATTGAGAGAGGAGTCAGGAGGCATTTCCATGACGACATCACTGTGGTCGTCCTCTTCCT 1442
|||||| ||||||||||||||||||||||| |||||||||| |||| | |||||||||||
Sbjct 1137 GATTGAAAGAGGAGTCAGGAGGCATTTCCACGACGACATCAATGTGATTGTCCTCTTCCT 1196
Query 1443 GGACACCAATCTGCTCAGCAGAGCCTCCTCTCTTAAAACCCCTTCTGTTTCTATCCGTGG 1502
||||||||||||||||||||||||||||||||| || |||| ||||||||| || |||||
Sbjct 1197 GGACACCAATCTGCTCAGCAGAGCCTCCTCTCTCAATACCC-TTCTGTTTCAATTCGTGG 1255
Query 1503 TGGTGG 1508
||||||
Sbjct 1256 TGGTGG 1261
Score = 706 bits (382), Expect = 0.0
Identities = 451/484 (93%), Gaps = 5/484 (1%)
Strand=Plus/Plus
Query 359 ATATGAGATGAGGCCCGATGTTATCCCTTTTCTTCAACTTTTTGACCTCTTGTCTCTGGC 418
||| |||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 180 ATACGAGATGAGGCCCGATGTTATCCCTTTTCATCAACTTTTTGGCCGCTTGTCTCTGGC 239
Query 419 CCTCT-----TCTTCCACCACTTCCCACACTTATTCTGATTCCAAAGGCAAACAAGACGG 473
||||| |||||| ||||||||||| |||| ||||||||||||| ||||||||||||
Sbjct 240 CCTCTGGCCCTCTTCCTCCACTTCCCACTCTTACTCTGATTCCAAAGCCAAACAAGACGG 299
Query 474 CCTTCTCTGGTACAAAGACTCTGCTCACCACCTTTTTGGTGATTTCTCCATGGCCGTTGT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 300 CCTTCTCTGGTACAAAGACTCTGCTCACCACCTTTTTGGTGATTTCTCCATGGCCCTTGT 359
Query 534 CCAGGCCAACAACCTCCTCGAGGATCAGAGCCAGGTCGAATCCGGTCCTTTGACCACCCT 593
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 360 CCAGGCCAACAACCTCCTTGAGGATCAGTGCCAGGTCGAATCCGGTCCTTTGACCACCCT 419
Query 594 CTCTTCTTCTGGTCCCTATGGAACCTTTGTTGGCGTCTATGACGGCCACGGAGGCCCTGA 653
||| ||||||||||| | |||||||||||||||| |||||||||||||||| ||||||||
Sbjct 420 CTCCTCTTCTGGTCCTTTTGGAACCTTTGTTGGCATCTATGACGGCCACGGCGGCCCTGA 479
Query 654 GACCTCCCGTTTTGTCAACGATCATCTCTTTCACCATCTCAAGAGATTCGCAGCGGAGCA 713
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 GACCTCCCGTTTTCTCAACGATCATCTCTTTCACCATCTCAAGAGATTCGCAGCCGAGCA 539
Query 714 GGATTCCATGTCTGTGGATGTGATAAGAAAGGCCTATGAGGCAACCGAAGAAGGGTTTCT 773
||| ||||||||||||| ||||||||||||||| ||||||||||||||| |||| |||||
Sbjct 540 GGACTCCATGTCTGTGGGTGTGATAAGAAAGGCGTATGAGGCAACCGAAAAAGGCTTTCT 599
Query 774 AGGGGTGGTGGCCAAGCAGTGGGCAGTGAAGCCACATATAGCAGCGGTTGGCTCTTGTTG 833
|||||||||| | || |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 600 AGGGGTGGTGACGAAACAGTGGGCAGTGAAGCCACATATAGCAGCGGTTGGCTCATGCTG 659
Query 834 CCTG 837
||||
Sbjct 660 CCTG 663
Score = 150 bits (81), Expect = 3e-35
Identities = 156/188 (83%), Gaps = 22/188 (12%)
Strand=Plus/Plus
Query 1505 GTGGTATCACTTTACCTAAGAAACTTTAAAACCAGGCTCCATCCATCTTCTAGTTATATT 1564
|||||||||||||||||||||||||||| || ||| |||||||||||| ||||||||||
Sbjct 1316 GTGGTATCACTTTACCTAAGAAACTTTATAATTAGGTTCCATCCATCTTGTAGTTATATT 1375
Query 1565 TATCCAACCAAAGATATGTGttttttttttctttctttatgtttttttgtctttttGGGT 1624
|||||||||||||||| || ||||| ||||| |||| | ||| | || |
Sbjct 1376 TATCCAACCAAAGATAAGT-TTTTTCTTTTC---CTTT-T-TTT----G-------GG-T 1417
Query 1625 TCACTCTTCCTG--G-TATAAGAAATGTATAATTTAAAACTGAAGCTAT-TGACATGTTG 1680
||||||||| || | ||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1418 TCACTCTTCTTGTTGGTATAAGAAATGTATAATTTTAAACTGAAGCTACCTGACATGTTG 1477
Query 1681 GATCTCAT 1688
||||||||
Sbjct 1478 GATCTCAT 1485
Score = 89.8 bits (48), Expect = 6e-17
Identities = 62/68 (91%), Gaps = 4/68 (6%)
Strand=Plus/Plus
Query 266 GTGAATGAATGGAAGTTTCCGACT--CT--CTCTTCTTTTGTTTTTTCAACATACTTCAT 321
||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 114 GTGAATGAATGCAAGTTTCCGACTGACTCCCTCTTCTTTTGTTTTTTCAACATACTTCAT 173
Query 322 TCATTCAT 329
|||||||
Sbjct 174 CCATTCAT 181
> Ahg478621 jgi|Araly1|478621|fgenesh2_kg.3__1322__AT3G12620.1
Length=1706
Score = 176 bits (95), Expect = 5e-43
Identities = 341/457 (75%), Gaps = 28/457 (6%)
Strand=Plus/Plus
Query 973 TCTGTGAG-GCAGGAAATGCACTCCTTACACCCTGATGACTCC-CATATTGTCGTCTTAA 1030
|||||||| | |||| ||| ||| || || || |||| ||| || ||||| ||||| |
Sbjct 912 TCTGTGAGAG-AGGAGTTGCGCTCGTTGCATCCAAATGA-TCCTCAGATTGTTGTCTTGA 969
Query 1031 AACACAATGTCTGGCGTGTTAAGGGCATTATTCAGGTATCACGATCCATAGGAGACGTGT 1090
| ||||| || ||||| || || || ||||| ||||| ||||| || || || || | |
Sbjct 970 AGCACAAAGTTTGGCGAGTCAAAGGTATTATACAGGTTTCACGGTCGATTGGTGATGCCT 1029
Query 1091 ATCTT-AAGAAATCGGAGTTCAACAAGGAACCTTTGTACACAAAGTACCGATTGCGGGAG 1149
| ||| |||||| | || |||||| ||||||| |||| |||||| | || | | |||
Sbjct 1030 A-CTTAAAGAAAGCAGAATTCAACCAGGAACCGTTGTTGGCAAAGTTCAGAGTCCCCGAG 1088
Query 1150 CCAAT-GAAAAGACCTAT-CTTGAGTTG-GGAACC-GTCGATAACCGTGCATGATCTCCA 1205
| | | | || || ||| || | || || | | || || || || | ||||
Sbjct 1089 GTTTTCCATACG-CCCATCCTT-AG-AGCAGAGCCAG-CAATTACAGTACACAAAATCCA 1144
Query 1206 ACCAGACGATCAGTTTCTGATATTTGCATCAGACGGACTT-TGGGAGCAGCTTAGC-AAC 1263
||||| ||||||||||||||||||||||||||||| ||| |||||||| |||| | ||
Sbjct 1145 TCCAGAGGATCAGTTTCTGATATTTGCATCAGACGG-CTTGTGGGAGCA-CTTAACCAAT 1202
Query 1264 CAAGAGGCTGTTGAAATCGTTCAGAAC-CA--CCCAAGAAACGGGATAGCGAGGA-GACT 1319
||||| |||||||| || || |||| || |||| | || ||||| || |||| | ||
Sbjct 1203 CAAGAAGCTGTTGACATTGT---GAACACATGCCCACGCAATGGGATTGCAAGGAAG-CT 1258
Query 1320 GGTGAAAGCTGCGCTGCAG-GAGGCAGCAAAGAAAAGAGAGATGAGATATTCTGATCTCA 1378
| ||| | || || || |||||||||||||| ||||||||||||||||| ||||| |
Sbjct 1259 AATAAAAACAGCTCTA-AGAGAGGCAGCAAAGAAGAGAGAGATGAGATATTCGGATCTAA 1317
Query 1379 ACAAGATTGAGAGAGGAGTCAGGAGGCATTTCCATGA 1415
| ||||| || |||||||| ||||| ||||| |||||
Sbjct 1318 AAAAGATCGATAGAGGAGTGAGGAGACATTTTCATGA 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63420257925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5