BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G66080.1 Length=1691 Score E Sequences producing significant alignments: (Bits) Value Ahg497008 jgi|Araly1|497008|fgenesh2_kg.8__2824__AT5G66080.1 861 0.0 Ahg478621 jgi|Araly1|478621|fgenesh2_kg.3__1322__AT3G12620.1 176 5e-43 > Ahg497008 jgi|Araly1|497008|fgenesh2_kg.8__2824__AT5G66080.1 Length=1485 Score = 861 bits (466), Expect = 0.0 Identities = 520/546 (95%), Gaps = 3/546 (1%) Strand=Plus/Plus Query 964 AGCATAGAGTCTGTGAGGCAGGAAATGCACTCCTTACACCCTGATGACTCCCATATTGTC 1023 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 718 AGCATAGAGTCTGTGAGGCAGGAAATGCACTCCTTACATCCTGATGACTCCCATATTGTC 777 Query 1024 GTCTTAAAACACAATGTCTGGCGTGTTAAGGGCATTATTCAGGTATCACGATCCATAGGA 1083 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 778 CTCTTAAGGCACAATGTCTGGCGTGTTAAGGGCTTTATTCAGGTATCACGATCCATAGGA 837 Query 1084 GACGTGTATCTTAAGAAATCGGAGTTCAACAAGGAACCTTTGTACACAAAGTACCGATTG 1143 |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| || Sbjct 838 GACGTGTATCTTAAGAAAGCGGAGTTCAACAGGGAACCTTTGTACACAAAGTACCGACTG 897 Query 1144 CGGGAGCCAATGAAAAGACCTATCTTGAGTTGGGAACCGTCGATAACCGTGCATGATCTC 1203 |||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||| Sbjct 898 CGGGAGCCCATGAAAAGACCCATCTTGAGTGGGGAACCATCGATAACCGTGCATGATCTC 957 Query 1204 CAACCAGACGATCAGTTTCTGATATTTGCATCAGACGGACTTTGGGAGCAGCTTAGCAAC 1263 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 958 CAACCAGACGATCAGTTTCTGATATTTGCATCAGACGGACTTTTGGAGCAGCTTAGCAAC 1017 Query 1264 CAAGAGGCTGTTGAAATCGTTCAGAACCACCCAAGAAACGGGATAGCGAGGAGACTGGTG 1323 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 CAAGAGGCTGTTGAAGTCGTTCAGAACCACCCAAGAAACGGGATAGCGAGGAGACTGGTG 1077 Query 1324 AAAGCTGCGCTGCAGGAGGCAGCAAAGAAAAGAGAGATGAGATA-TTCTGATCTCAACAA 1382 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 1078 AAAGCTGCGCTGCAGGAGGCAGCAAAGAAAAGAGAGATGAGATACTT-TGATCTCAACAA 1136 Query 1383 GATTGAGAGAGGAGTCAGGAGGCATTTCCATGACGACATCACTGTGGTCGTCCTCTTCCT 1442 |||||| ||||||||||||||||||||||| |||||||||| |||| | ||||||||||| Sbjct 1137 GATTGAAAGAGGAGTCAGGAGGCATTTCCACGACGACATCAATGTGATTGTCCTCTTCCT 1196 Query 1443 GGACACCAATCTGCTCAGCAGAGCCTCCTCTCTTAAAACCCCTTCTGTTTCTATCCGTGG 1502 ||||||||||||||||||||||||||||||||| || |||| ||||||||| || ||||| Sbjct 1197 GGACACCAATCTGCTCAGCAGAGCCTCCTCTCTCAATACCC-TTCTGTTTCAATTCGTGG 1255 Query 1503 TGGTGG 1508 |||||| Sbjct 1256 TGGTGG 1261 Score = 706 bits (382), Expect = 0.0 Identities = 451/484 (93%), Gaps = 5/484 (1%) Strand=Plus/Plus Query 359 ATATGAGATGAGGCCCGATGTTATCCCTTTTCTTCAACTTTTTGACCTCTTGTCTCTGGC 418 ||| |||||||||||||||||||||||||||| ||||||||||| || |||||||||||| Sbjct 180 ATACGAGATGAGGCCCGATGTTATCCCTTTTCATCAACTTTTTGGCCGCTTGTCTCTGGC 239 Query 419 CCTCT-----TCTTCCACCACTTCCCACACTTATTCTGATTCCAAAGGCAAACAAGACGG 473 ||||| |||||| ||||||||||| |||| ||||||||||||| |||||||||||| Sbjct 240 CCTCTGGCCCTCTTCCTCCACTTCCCACTCTTACTCTGATTCCAAAGCCAAACAAGACGG 299 Query 474 CCTTCTCTGGTACAAAGACTCTGCTCACCACCTTTTTGGTGATTTCTCCATGGCCGTTGT 533 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 300 CCTTCTCTGGTACAAAGACTCTGCTCACCACCTTTTTGGTGATTTCTCCATGGCCCTTGT 359 Query 534 CCAGGCCAACAACCTCCTCGAGGATCAGAGCCAGGTCGAATCCGGTCCTTTGACCACCCT 593 |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 360 CCAGGCCAACAACCTCCTTGAGGATCAGTGCCAGGTCGAATCCGGTCCTTTGACCACCCT 419 Query 594 CTCTTCTTCTGGTCCCTATGGAACCTTTGTTGGCGTCTATGACGGCCACGGAGGCCCTGA 653 ||| ||||||||||| | |||||||||||||||| |||||||||||||||| |||||||| Sbjct 420 CTCCTCTTCTGGTCCTTTTGGAACCTTTGTTGGCATCTATGACGGCCACGGCGGCCCTGA 479 Query 654 GACCTCCCGTTTTGTCAACGATCATCTCTTTCACCATCTCAAGAGATTCGCAGCGGAGCA 713 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 480 GACCTCCCGTTTTCTCAACGATCATCTCTTTCACCATCTCAAGAGATTCGCAGCCGAGCA 539 Query 714 GGATTCCATGTCTGTGGATGTGATAAGAAAGGCCTATGAGGCAACCGAAGAAGGGTTTCT 773 ||| ||||||||||||| ||||||||||||||| ||||||||||||||| |||| ||||| Sbjct 540 GGACTCCATGTCTGTGGGTGTGATAAGAAAGGCGTATGAGGCAACCGAAAAAGGCTTTCT 599 Query 774 AGGGGTGGTGGCCAAGCAGTGGGCAGTGAAGCCACATATAGCAGCGGTTGGCTCTTGTTG 833 |||||||||| | || |||||||||||||||||||||||||||||||||||||| || || Sbjct 600 AGGGGTGGTGACGAAACAGTGGGCAGTGAAGCCACATATAGCAGCGGTTGGCTCATGCTG 659 Query 834 CCTG 837 |||| Sbjct 660 CCTG 663 Score = 150 bits (81), Expect = 3e-35 Identities = 156/188 (83%), Gaps = 22/188 (12%) Strand=Plus/Plus Query 1505 GTGGTATCACTTTACCTAAGAAACTTTAAAACCAGGCTCCATCCATCTTCTAGTTATATT 1564 |||||||||||||||||||||||||||| || ||| |||||||||||| |||||||||| Sbjct 1316 GTGGTATCACTTTACCTAAGAAACTTTATAATTAGGTTCCATCCATCTTGTAGTTATATT 1375 Query 1565 TATCCAACCAAAGATATGTGttttttttttctttctttatgtttttttgtctttttGGGT 1624 |||||||||||||||| || ||||| ||||| |||| | ||| | || | Sbjct 1376 TATCCAACCAAAGATAAGT-TTTTTCTTTTC---CTTT-T-TTT----G-------GG-T 1417 Query 1625 TCACTCTTCCTG--G-TATAAGAAATGTATAATTTAAAACTGAAGCTAT-TGACATGTTG 1680 ||||||||| || | ||||||||||||||||||| |||||||||||| |||||||||| Sbjct 1418 TCACTCTTCTTGTTGGTATAAGAAATGTATAATTTTAAACTGAAGCTACCTGACATGTTG 1477 Query 1681 GATCTCAT 1688 |||||||| Sbjct 1478 GATCTCAT 1485 Score = 89.8 bits (48), Expect = 6e-17 Identities = 62/68 (91%), Gaps = 4/68 (6%) Strand=Plus/Plus Query 266 GTGAATGAATGGAAGTTTCCGACT--CT--CTCTTCTTTTGTTTTTTCAACATACTTCAT 321 ||||||||||| |||||||||||| || |||||||||||||||||||||||||||||| Sbjct 114 GTGAATGAATGCAAGTTTCCGACTGACTCCCTCTTCTTTTGTTTTTTCAACATACTTCAT 173 Query 322 TCATTCAT 329 ||||||| Sbjct 174 CCATTCAT 181 > Ahg478621 jgi|Araly1|478621|fgenesh2_kg.3__1322__AT3G12620.1 Length=1706 Score = 176 bits (95), Expect = 5e-43 Identities = 341/457 (75%), Gaps = 28/457 (6%) Strand=Plus/Plus Query 973 TCTGTGAG-GCAGGAAATGCACTCCTTACACCCTGATGACTCC-CATATTGTCGTCTTAA 1030 |||||||| | |||| ||| ||| || || || |||| ||| || ||||| ||||| | Sbjct 912 TCTGTGAGAG-AGGAGTTGCGCTCGTTGCATCCAAATGA-TCCTCAGATTGTTGTCTTGA 969 Query 1031 AACACAATGTCTGGCGTGTTAAGGGCATTATTCAGGTATCACGATCCATAGGAGACGTGT 1090 | ||||| || ||||| || || || ||||| ||||| ||||| || || || || | | Sbjct 970 AGCACAAAGTTTGGCGAGTCAAAGGTATTATACAGGTTTCACGGTCGATTGGTGATGCCT 1029 Query 1091 ATCTT-AAGAAATCGGAGTTCAACAAGGAACCTTTGTACACAAAGTACCGATTGCGGGAG 1149 | ||| |||||| | || |||||| ||||||| |||| |||||| | || | | ||| Sbjct 1030 A-CTTAAAGAAAGCAGAATTCAACCAGGAACCGTTGTTGGCAAAGTTCAGAGTCCCCGAG 1088 Query 1150 CCAAT-GAAAAGACCTAT-CTTGAGTTG-GGAACC-GTCGATAACCGTGCATGATCTCCA 1205 | | | | || || ||| || | || || | | || || || || | |||| Sbjct 1089 GTTTTCCATACG-CCCATCCTT-AG-AGCAGAGCCAG-CAATTACAGTACACAAAATCCA 1144 Query 1206 ACCAGACGATCAGTTTCTGATATTTGCATCAGACGGACTT-TGGGAGCAGCTTAGC-AAC 1263 ||||| ||||||||||||||||||||||||||||| ||| |||||||| |||| | || Sbjct 1145 TCCAGAGGATCAGTTTCTGATATTTGCATCAGACGG-CTTGTGGGAGCA-CTTAACCAAT 1202 Query 1264 CAAGAGGCTGTTGAAATCGTTCAGAAC-CA--CCCAAGAAACGGGATAGCGAGGA-GACT 1319 ||||| |||||||| || || |||| || |||| | || ||||| || |||| | || Sbjct 1203 CAAGAAGCTGTTGACATTGT---GAACACATGCCCACGCAATGGGATTGCAAGGAAG-CT 1258 Query 1320 GGTGAAAGCTGCGCTGCAG-GAGGCAGCAAAGAAAAGAGAGATGAGATATTCTGATCTCA 1378 | ||| | || || || |||||||||||||| ||||||||||||||||| ||||| | Sbjct 1259 AATAAAAACAGCTCTA-AGAGAGGCAGCAAAGAAGAGAGAGATGAGATATTCGGATCTAA 1317 Query 1379 ACAAGATTGAGAGAGGAGTCAGGAGGCATTTCCATGA 1415 | ||||| || |||||||| ||||| ||||| ||||| Sbjct 1318 AAAAGATCGATAGAGGAGTGAGGAGACATTTTCATGA 1354 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63420257925 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5